HEADER MEMBRANE PROTEIN 30-DEC-21 7TD4
TITLE SPHINGOSINE-1-PHOSPHATE RECEPTOR 1-GI COMPLEX BOUND TO SIPONIMOD
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)/G(S)/G(T) SUBUNIT
COMPND 3 BETA-1;
COMPND 4 CHAIN: B;
COMPND 5 SYNONYM: TRANSDUCIN BETA CHAIN 1;
COMPND 6 ENGINEERED: YES;
COMPND 7 MOL_ID: 2;
COMPND 8 MOLECULE: GUANINE NUCLEOTIDE-BINDING PROTEIN G(I) SUBUNIT ALPHA-1;
COMPND 9 CHAIN: A;
COMPND 10 SYNONYM: ADENYLATE CYCLASE-INHIBITING G ALPHA PROTEIN;
COMPND 11 ENGINEERED: YES;
COMPND 12 MUTATION: YES;
COMPND 13 MOL_ID: 3;
COMPND 14 MOLECULE: GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)/G(S)/G(O) SUBUNIT
COMPND 15 GAMMA-2;
COMPND 16 CHAIN: G;
COMPND 17 SYNONYM: G GAMMA-I;
COMPND 18 ENGINEERED: YES;
COMPND 19 MUTATION: YES;
COMPND 20 MOL_ID: 4;
COMPND 21 MOLECULE: SPHINGOSINE 1-PHOSPHATE RECEPTOR 1;
COMPND 22 CHAIN: R;
COMPND 23 SYNONYM: S1P RECEPTOR 1,S1P1,ENDOTHELIAL DIFFERENTIATION G-PROTEIN
COMPND 24 COUPLED RECEPTOR 1,SPHINGOSINE 1-PHOSPHATE RECEPTOR EDG-1,S1P
COMPND 25 RECEPTOR EDG-1;
COMPND 26 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS;
SOURCE 3 ORGANISM_COMMON: CATTLE;
SOURCE 4 ORGANISM_TAXID: 9913;
SOURCE 5 GENE: GNB1;
SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108;
SOURCE 8 MOL_ID: 2;
SOURCE 9 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS;
SOURCE 10 ORGANISM_COMMON: NORWAY RAT;
SOURCE 11 ORGANISM_TAXID: 10116;
SOURCE 12 GENE: GNAI1, GNAI-1;
SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 15 MOL_ID: 3;
SOURCE 16 ORGANISM_SCIENTIFIC: BOS TAURUS;
SOURCE 17 ORGANISM_COMMON: CATTLE;
SOURCE 18 ORGANISM_TAXID: 9913;
SOURCE 19 GENE: GNG2;
SOURCE 20 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA;
SOURCE 21 EXPRESSION_SYSTEM_TAXID: 7108;
SOURCE 22 MOL_ID: 4;
SOURCE 23 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 24 ORGANISM_COMMON: HUMAN;
SOURCE 25 ORGANISM_TAXID: 9606;
SOURCE 26 GENE: S1PR1, CHEDG1, EDG1;
SOURCE 27 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA;
SOURCE 28 EXPRESSION_SYSTEM_TAXID: 7108
KEYWDS GPCR, COMPLEX, LIPID, MEMBRANE PROTEIN
EXPDTA ELECTRON MICROSCOPY
AUTHOR S.LIU,N.PAKNEJAD,L.ZHU,Y.KIHARA,D.RAY,J.CHUN,W.LIU,R.K.HITE,X.Y.HUANG
REVDAT 3 09-OCT-24 7TD4 1 REMARK
REVDAT 2 23-FEB-22 7TD4 1 JRNL
REVDAT 1 09-FEB-22 7TD4 0
JRNL AUTH S.LIU,N.PAKNEJAD,L.ZHU,Y.KIHARA,M.RAY,J.CHUN,W.LIU,R.K.HITE,
JRNL AUTH 2 X.Y.HUANG
JRNL TITL DIFFERENTIAL ACTIVATION MECHANISMS OF LIPID GPCRS BY
JRNL TITL 2 LYSOPHOSPHATIDIC ACID AND SPHINGOSINE 1-PHOSPHATE.
JRNL REF NAT COMMUN V. 13 731 2022
JRNL REFN ESSN 2041-1723
JRNL PMID 35136060
JRNL DOI 10.1038/S41467-022-28417-2
REMARK 2
REMARK 2 RESOLUTION. 2.60 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 SOFTWARE PACKAGES : NULL
REMARK 3 RECONSTRUCTION SCHEMA : NULL
REMARK 3
REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT
REMARK 3 PDB ENTRY : NULL
REMARK 3 REFINEMENT SPACE : NULL
REMARK 3 REFINEMENT PROTOCOL : NULL
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL
REMARK 3
REMARK 3 FITTING PROCEDURE : NULL
REMARK 3
REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS
REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL
REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL
REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.600
REMARK 3 NUMBER OF PARTICLES : 178997
REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE
REMARK 3 CORRECTION
REMARK 3
REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL
REMARK 3
REMARK 3 OTHER DETAILS: NULL
REMARK 4
REMARK 4 7TD4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JAN-22.
REMARK 100 THE DEPOSITION ID IS D_1000262075.
REMARK 245
REMARK 245 EXPERIMENTAL DETAILS
REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE
REMARK 245 SPECIMEN TYPE : NULL
REMARK 245
REMARK 245 ELECTRON MICROSCOPE SAMPLE
REMARK 245 SAMPLE TYPE : PARTICLE
REMARK 245 PARTICLE TYPE : POINT
REMARK 245 NAME OF SAMPLE : COMPLEX OF SPHINGOSINE-1
REMARK 245 -PHOSPHATE RECEPTOR 1 WITH G-
REMARK 245 PROTEIN AND SIPONIMOD
REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL
REMARK 245 SAMPLE SUPPORT DETAILS : NULL
REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL
REMARK 245 SAMPLE BUFFER : NULL
REMARK 245 PH : 7.00
REMARK 245 SAMPLE DETAILS : NULL
REMARK 245
REMARK 245 DATA ACQUISITION
REMARK 245 DATE OF EXPERIMENT : NULL
REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL
REMARK 245 TEMPERATURE (KELVIN) : NULL
REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS
REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K)
REMARK 245 MINIMUM DEFOCUS (NM) : 800.00
REMARK 245 MAXIMUM DEFOCUS (NM) : 1500.00
REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL
REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL
REMARK 245 NOMINAL CS : NULL
REMARK 245 IMAGING MODE : BRIGHT FIELD
REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 2340.00
REMARK 245 ILLUMINATION MODE : FLOOD BEAM
REMARK 245 NOMINAL MAGNIFICATION : NULL
REMARK 245 CALIBRATED MAGNIFICATION : NULL
REMARK 245 SOURCE : FIELD EMISSION GUN
REMARK 245 ACCELERATION VOLTAGE (KV) : 300
REMARK 245 IMAGING DETAILS : NULL
REMARK 247
REMARK 247 ELECTRON MICROSCOPY
REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON
REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE
REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES
REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION
REMARK 247 OF THE STRUCTURE FACTORS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, G, R
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET B 1
REMARK 465 SER B 2
REMARK 465 GLU B 3
REMARK 465 LEU B 4
REMARK 465 ASP B 5
REMARK 465 GLN B 6
REMARK 465 LEU B 7
REMARK 465 ARG B 8
REMARK 465 GLN B 9
REMARK 465 MET A -24
REMARK 465 GLY A -23
REMARK 465 SER A -22
REMARK 465 SER A -21
REMARK 465 HIS A -20
REMARK 465 HIS A -19
REMARK 465 HIS A -18
REMARK 465 HIS A -17
REMARK 465 HIS A -16
REMARK 465 HIS A -15
REMARK 465 SER A -14
REMARK 465 SER A -13
REMARK 465 GLY A -12
REMARK 465 LEU A -11
REMARK 465 GLU A -10
REMARK 465 VAL A -9
REMARK 465 LEU A -8
REMARK 465 PHE A -7
REMARK 465 GLN A -6
REMARK 465 GLY A -5
REMARK 465 PRO A -4
REMARK 465 HIS A -3
REMARK 465 MET A -2
REMARK 465 ALA A -1
REMARK 465 SER A 0
REMARK 465 MET A 1
REMARK 465 GLY A 2
REMARK 465 CYS A 3
REMARK 465 THR A 4
REMARK 465 LEU A 5
REMARK 465 SER A 6
REMARK 465 ILE A 56
REMARK 465 HIS A 57
REMARK 465 GLU A 58
REMARK 465 ALA A 59
REMARK 465 GLY A 60
REMARK 465 TYR A 61
REMARK 465 SER A 62
REMARK 465 GLU A 63
REMARK 465 GLU A 64
REMARK 465 GLU A 65
REMARK 465 CYS A 66
REMARK 465 LYS A 67
REMARK 465 GLN A 68
REMARK 465 TYR A 69
REMARK 465 LYS A 70
REMARK 465 ALA A 71
REMARK 465 VAL A 72
REMARK 465 VAL A 73
REMARK 465 TYR A 74
REMARK 465 SER A 75
REMARK 465 ASN A 76
REMARK 465 THR A 77
REMARK 465 ILE A 78
REMARK 465 GLN A 79
REMARK 465 SER A 80
REMARK 465 ILE A 81
REMARK 465 ILE A 82
REMARK 465 ALA A 83
REMARK 465 ILE A 84
REMARK 465 ILE A 85
REMARK 465 ARG A 86
REMARK 465 ALA A 87
REMARK 465 MET A 88
REMARK 465 GLY A 89
REMARK 465 ARG A 90
REMARK 465 LEU A 91
REMARK 465 LYS A 92
REMARK 465 ILE A 93
REMARK 465 ASP A 94
REMARK 465 PHE A 95
REMARK 465 GLY A 96
REMARK 465 ASP A 97
REMARK 465 SER A 98
REMARK 465 ALA A 99
REMARK 465 ARG A 100
REMARK 465 ALA A 101
REMARK 465 ASP A 102
REMARK 465 ASP A 103
REMARK 465 ALA A 104
REMARK 465 ARG A 105
REMARK 465 GLN A 106
REMARK 465 LEU A 107
REMARK 465 PHE A 108
REMARK 465 VAL A 109
REMARK 465 LEU A 110
REMARK 465 ALA A 111
REMARK 465 GLY A 112
REMARK 465 ALA A 113
REMARK 465 ALA A 114
REMARK 465 GLU A 115
REMARK 465 GLU A 116
REMARK 465 GLY A 117
REMARK 465 PHE A 118
REMARK 465 MET A 119
REMARK 465 THR A 120
REMARK 465 ALA A 121
REMARK 465 GLU A 122
REMARK 465 LEU A 123
REMARK 465 ALA A 124
REMARK 465 GLY A 125
REMARK 465 VAL A 126
REMARK 465 ILE A 127
REMARK 465 LYS A 128
REMARK 465 ARG A 129
REMARK 465 LEU A 130
REMARK 465 TRP A 131
REMARK 465 LYS A 132
REMARK 465 ASP A 133
REMARK 465 SER A 134
REMARK 465 GLY A 135
REMARK 465 VAL A 136
REMARK 465 GLN A 137
REMARK 465 ALA A 138
REMARK 465 CYS A 139
REMARK 465 PHE A 140
REMARK 465 ASN A 141
REMARK 465 ARG A 142
REMARK 465 SER A 143
REMARK 465 ARG A 144
REMARK 465 GLU A 145
REMARK 465 TYR A 146
REMARK 465 GLN A 147
REMARK 465 LEU A 148
REMARK 465 ASN A 149
REMARK 465 ASP A 150
REMARK 465 SER A 151
REMARK 465 ALA A 152
REMARK 465 ALA A 153
REMARK 465 TYR A 154
REMARK 465 TYR A 155
REMARK 465 LEU A 156
REMARK 465 ASN A 157
REMARK 465 ASP A 158
REMARK 465 LEU A 159
REMARK 465 ASP A 160
REMARK 465 ARG A 161
REMARK 465 ILE A 162
REMARK 465 ALA A 163
REMARK 465 GLN A 164
REMARK 465 PRO A 165
REMARK 465 ASN A 166
REMARK 465 TYR A 167
REMARK 465 ILE A 168
REMARK 465 PRO A 169
REMARK 465 THR A 170
REMARK 465 GLN A 171
REMARK 465 GLN A 172
REMARK 465 ASP A 173
REMARK 465 VAL A 174
REMARK 465 LEU A 175
REMARK 465 ARG A 176
REMARK 465 THR A 177
REMARK 465 ARG A 178
REMARK 465 VAL A 179
REMARK 465 LYS A 180
REMARK 465 THR A 181
REMARK 465 MET G 1
REMARK 465 ALA G 2
REMARK 465 SER G 3
REMARK 465 ASN G 4
REMARK 465 ASN G 5
REMARK 465 THR G 6
REMARK 465 ALA G 7
REMARK 465 SER G 8
REMARK 465 ILE G 9
REMARK 465 ALA G 10
REMARK 465 GLN G 11
REMARK 465 ALA G 12
REMARK 465 LYS G 64
REMARK 465 LYS G 65
REMARK 465 PHE G 66
REMARK 465 PHE G 67
REMARK 465 SER G 68
REMARK 465 ALA G 69
REMARK 465 ILE G 70
REMARK 465 LEU G 71
REMARK 465 ASP R -9
REMARK 465 TYR R -8
REMARK 465 LYS R -7
REMARK 465 ASP R -6
REMARK 465 ASP R -5
REMARK 465 ASP R -4
REMARK 465 ASP R -3
REMARK 465 LYS R -2
REMARK 465 ALA R -1
REMARK 465 ALA R 0
REMARK 465 ALA R 1
REMARK 465 GLY R 2
REMARK 465 PRO R 3
REMARK 465 THR R 4
REMARK 465 SER R 5
REMARK 465 VAL R 6
REMARK 465 PRO R 7
REMARK 465 LEU R 8
REMARK 465 VAL R 9
REMARK 465 LYS R 10
REMARK 465 ALA R 11
REMARK 465 HIS R 12
REMARK 465 ARG R 13
REMARK 465 SER R 14
REMARK 465 SER R 15
REMARK 465 VAL R 16
REMARK 465 SER R 17
REMARK 465 ILE R 37
REMARK 465 SER R 38
REMARK 465 ALA R 39
REMARK 465 ASP R 40
REMARK 465 LYS R 41
REMARK 465 GLU R 42
REMARK 465 ASN R 43
REMARK 465 SER R 44
REMARK 465 ASN R 240
REMARK 465 ILE R 241
REMARK 465 SER R 242
REMARK 465 LYS R 243
REMARK 465 ALA R 244
REMARK 465 SER R 245
REMARK 465 ARG R 246
REMARK 465 SER R 247
REMARK 465 ARG R 324
REMARK 465 ILE R 325
REMARK 465 MET R 326
REMARK 465 SER R 327
REMARK 465 CYS R 328
REMARK 465 CYS R 329
REMARK 465 LYS R 330
REMARK 465 CYS R 331
REMARK 465 PRO R 332
REMARK 465 SER R 333
REMARK 465 GLY R 334
REMARK 465 ASP R 335
REMARK 465 SER R 336
REMARK 465 ALA R 337
REMARK 465 GLY R 338
REMARK 465 LYS R 339
REMARK 465 PHE R 340
REMARK 465 LYS R 341
REMARK 465 ARG R 342
REMARK 465 PRO R 343
REMARK 465 ILE R 344
REMARK 465 ILE R 345
REMARK 465 ALA R 346
REMARK 465 GLY R 347
REMARK 465 MET R 348
REMARK 465 GLU R 349
REMARK 465 PHE R 350
REMARK 465 SER R 351
REMARK 465 ARG R 352
REMARK 465 SER R 353
REMARK 465 LYS R 354
REMARK 465 SER R 355
REMARK 465 ASP R 356
REMARK 465 ASN R 357
REMARK 465 SER R 358
REMARK 465 SER R 359
REMARK 465 HIS R 360
REMARK 465 PRO R 361
REMARK 465 GLN R 362
REMARK 465 LYS R 363
REMARK 465 ASP R 364
REMARK 465 GLU R 365
REMARK 465 GLY R 366
REMARK 465 ASP R 367
REMARK 465 ASN R 368
REMARK 465 PRO R 369
REMARK 465 GLU R 370
REMARK 465 THR R 371
REMARK 465 ILE R 372
REMARK 465 MET R 373
REMARK 465 SER R 374
REMARK 465 SER R 375
REMARK 465 GLY R 376
REMARK 465 ASN R 377
REMARK 465 VAL R 378
REMARK 465 ASN R 379
REMARK 465 SER R 380
REMARK 465 SER R 381
REMARK 465 SER R 382
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 GLU B 10 CG CD OE1 OE2
REMARK 470 GLU B 12 CG CD OE1 OE2
REMARK 470 LYS B 15 CG CD CE NZ
REMARK 470 ARG B 22 CG CD NE CZ NH1 NH2
REMARK 470 LYS B 23 CG CD CE NZ
REMARK 470 GLN B 32 CG CD OE1 NE2
REMARK 470 ASP B 38 CG OD1 OD2
REMARK 470 ARG B 42 CG CD NE CZ NH1 NH2
REMARK 470 GLU B 130 CG CD OE1 OE2
REMARK 470 ASP B 258 CG OD1 OD2
REMARK 470 GLU A 8 CG CD OE1 OE2
REMARK 470 GLU A 43 CG CD OE1 OE2
REMARK 470 ARG A 205 CG CD NE CZ NH1 NH2
REMARK 470 ASP A 237 CG OD1 OD2
REMARK 470 GLU A 238 CG CD OE1 OE2
REMARK 470 GLU A 239 CG CD OE1 OE2
REMARK 470 LYS A 280 CG CD CE NZ
REMARK 470 GLU A 289 CG CD OE1 OE2
REMARK 470 SER A 293 OG
REMARK 470 CYS A 325 SG
REMARK 470 THR A 327 OG1 CG2
REMARK 470 ARG G 13 CG CD NE CZ NH1 NH2
REMARK 470 GLU G 17 CG CD OE1 OE2
REMARK 470 GLU G 22 CG CD OE1 OE2
REMARK 470 ASN G 24 CG OD1 ND2
REMARK 470 ASP G 26 CG OD1 OD2
REMARK 470 LYS G 29 CG CD CE NZ
REMARK 470 LYS G 46 CG CD CE NZ
REMARK 470 GLU G 58 CG CD OE1 OE2
REMARK 470 ASN R 21 CG OD1 ND2
REMARK 470 ASN R 36 CG OD1 ND2
REMARK 470 LYS R 46 CG CD CE NZ
REMARK 470 LEU R 47 CG CD1 CD2
REMARK 470 VAL R 50 CG1 CG2
REMARK 470 LEU R 54 CG CD1 CD2
REMARK 470 CYS R 57 SG
REMARK 470 LEU R 61 CG CD1 CD2
REMARK 470 LEU R 68 CG CD1 CD2
REMARK 470 LYS R 72 CG CD CE NZ
REMARK 470 LYS R 74 CG CD CE NZ
REMARK 470 LYS R 75 CG CD CE NZ
REMARK 470 LYS R 111 CG CD CE NZ
REMARK 470 SER R 155 OG
REMARK 470 LEU R 160 CG CD1 CD2
REMARK 470 PHE R 161 CG CD1 CD2 CE1 CE2 CZ
REMARK 470 ARG R 223 CG CD NE CZ NH1 NH2
REMARK 470 ARG R 238 CG CD NE CZ NH1 NH2
REMARK 470 LYS R 239 CG CD CE NZ
REMARK 470 SER R 248 OG
REMARK 470 GLU R 249 CG CD OE1 OE2
REMARK 470 LEU R 255 CG CD1 CD2
REMARK 470 LYS R 256 CG CD CE NZ
REMARK 470 LYS R 283 CG CD CE NZ
REMARK 470 ARG R 292 CG CD NE CZ NH1 NH2
REMARK 470 LYS R 316 CG CD CE NZ
REMARK 470 GLU R 317 CG CD OE1 OE2
REMARK 470 ARG R 320 CG CD NE CZ NH1 NH2
REMARK 470 PHE R 322 CG CD1 CD2 CE1 CE2 CZ
REMARK 470 ILE R 323 CG1 CG2 CD1
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 TRP B 99 54.39 -93.29
REMARK 500 SER B 227 -167.94 -167.39
REMARK 500 PHE B 292 6.98 81.97
REMARK 500 SER B 334 13.81 81.26
REMARK 500 TYR A 287 71.57 61.54
REMARK 500 LYS A 314 0.73 -69.37
REMARK 500 THR A 329 8.53 82.10
REMARK 500 THR R 286 -43.09 -130.69
REMARK 500 ARG R 292 57.41 -96.51
REMARK 500 GLU R 317 -30.02 -130.90
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: EMD-25823 RELATED DB: EMDB
REMARK 900 SPHINGOSINE-1-PHOSPHATE RECEPTOR 1-GI COMPLEX BOUND TO SIPONIMOD
DBREF 7TD4 B 1 340 UNP P62871 GBB1_BOVIN 1 340
DBREF 7TD4 A 1 354 UNP B2RSH2 GNAI1_MOUSE 1 354
DBREF 7TD4 G 1 71 UNP P63212 GBG2_BOVIN 1 71
DBREF 7TD4 R 2 382 UNP P21453 S1PR1_HUMAN 2 382
SEQADV 7TD4 MET A -24 UNP B2RSH2 INITIATING METHIONINE
SEQADV 7TD4 GLY A -23 UNP B2RSH2 EXPRESSION TAG
SEQADV 7TD4 SER A -22 UNP B2RSH2 EXPRESSION TAG
SEQADV 7TD4 SER A -21 UNP B2RSH2 EXPRESSION TAG
SEQADV 7TD4 HIS A -20 UNP B2RSH2 EXPRESSION TAG
SEQADV 7TD4 HIS A -19 UNP B2RSH2 EXPRESSION TAG
SEQADV 7TD4 HIS A -18 UNP B2RSH2 EXPRESSION TAG
SEQADV 7TD4 HIS A -17 UNP B2RSH2 EXPRESSION TAG
SEQADV 7TD4 HIS A -16 UNP B2RSH2 EXPRESSION TAG
SEQADV 7TD4 HIS A -15 UNP B2RSH2 EXPRESSION TAG
SEQADV 7TD4 SER A -14 UNP B2RSH2 EXPRESSION TAG
SEQADV 7TD4 SER A -13 UNP B2RSH2 EXPRESSION TAG
SEQADV 7TD4 GLY A -12 UNP B2RSH2 EXPRESSION TAG
SEQADV 7TD4 LEU A -11 UNP B2RSH2 EXPRESSION TAG
SEQADV 7TD4 GLU A -10 UNP B2RSH2 EXPRESSION TAG
SEQADV 7TD4 VAL A -9 UNP B2RSH2 EXPRESSION TAG
SEQADV 7TD4 LEU A -8 UNP B2RSH2 EXPRESSION TAG
SEQADV 7TD4 PHE A -7 UNP B2RSH2 EXPRESSION TAG
SEQADV 7TD4 GLN A -6 UNP B2RSH2 EXPRESSION TAG
SEQADV 7TD4 GLY A -5 UNP B2RSH2 EXPRESSION TAG
SEQADV 7TD4 PRO A -4 UNP B2RSH2 EXPRESSION TAG
SEQADV 7TD4 HIS A -3 UNP B2RSH2 EXPRESSION TAG
SEQADV 7TD4 MET A -2 UNP B2RSH2 EXPRESSION TAG
SEQADV 7TD4 ALA A -1 UNP B2RSH2 EXPRESSION TAG
SEQADV 7TD4 SER A 0 UNP B2RSH2 EXPRESSION TAG
SEQADV 7TD4 ALA A 203 UNP B2RSH2 GLY 203 ENGINEERED MUTATION
SEQADV 7TD4 SER G 68 UNP P63212 CYS 68 ENGINEERED MUTATION
SEQADV 7TD4 ASP R -9 UNP P21453 EXPRESSION TAG
SEQADV 7TD4 TYR R -8 UNP P21453 EXPRESSION TAG
SEQADV 7TD4 LYS R -7 UNP P21453 EXPRESSION TAG
SEQADV 7TD4 ASP R -6 UNP P21453 EXPRESSION TAG
SEQADV 7TD4 ASP R -5 UNP P21453 EXPRESSION TAG
SEQADV 7TD4 ASP R -4 UNP P21453 EXPRESSION TAG
SEQADV 7TD4 ASP R -3 UNP P21453 EXPRESSION TAG
SEQADV 7TD4 LYS R -2 UNP P21453 EXPRESSION TAG
SEQADV 7TD4 ALA R -1 UNP P21453 EXPRESSION TAG
SEQADV 7TD4 ALA R 0 UNP P21453 EXPRESSION TAG
SEQADV 7TD4 ALA R 1 UNP P21453 EXPRESSION TAG
SEQRES 1 B 340 MET SER GLU LEU ASP GLN LEU ARG GLN GLU ALA GLU GLN
SEQRES 2 B 340 LEU LYS ASN GLN ILE ARG ASP ALA ARG LYS ALA CYS ALA
SEQRES 3 B 340 ASP ALA THR LEU SER GLN ILE THR ASN ASN ILE ASP PRO
SEQRES 4 B 340 VAL GLY ARG ILE GLN MET ARG THR ARG ARG THR LEU ARG
SEQRES 5 B 340 GLY HIS LEU ALA LYS ILE TYR ALA MET HIS TRP GLY THR
SEQRES 6 B 340 ASP SER ARG LEU LEU VAL SER ALA SER GLN ASP GLY LYS
SEQRES 7 B 340 LEU ILE ILE TRP ASP SER TYR THR THR ASN LYS VAL HIS
SEQRES 8 B 340 ALA ILE PRO LEU ARG SER SER TRP VAL MET THR CYS ALA
SEQRES 9 B 340 TYR ALA PRO SER GLY ASN TYR VAL ALA CYS GLY GLY LEU
SEQRES 10 B 340 ASP ASN ILE CYS SER ILE TYR ASN LEU LYS THR ARG GLU
SEQRES 11 B 340 GLY ASN VAL ARG VAL SER ARG GLU LEU ALA GLY HIS THR
SEQRES 12 B 340 GLY TYR LEU SER CYS CYS ARG PHE LEU ASP ASP ASN GLN
SEQRES 13 B 340 ILE VAL THR SER SER GLY ASP THR THR CYS ALA LEU TRP
SEQRES 14 B 340 ASP ILE GLU THR GLY GLN GLN THR THR THR PHE THR GLY
SEQRES 15 B 340 HIS THR GLY ASP VAL MET SER LEU SER LEU ALA PRO ASP
SEQRES 16 B 340 THR ARG LEU PHE VAL SER GLY ALA CYS ASP ALA SER ALA
SEQRES 17 B 340 LYS LEU TRP ASP VAL ARG GLU GLY MET CYS ARG GLN THR
SEQRES 18 B 340 PHE THR GLY HIS GLU SER ASP ILE ASN ALA ILE CYS PHE
SEQRES 19 B 340 PHE PRO ASN GLY ASN ALA PHE ALA THR GLY SER ASP ASP
SEQRES 20 B 340 ALA THR CYS ARG LEU PHE ASP LEU ARG ALA ASP GLN GLU
SEQRES 21 B 340 LEU MET THR TYR SER HIS ASP ASN ILE ILE CYS GLY ILE
SEQRES 22 B 340 THR SER VAL SER PHE SER LYS SER GLY ARG LEU LEU LEU
SEQRES 23 B 340 ALA GLY TYR ASP ASP PHE ASN CYS ASN VAL TRP ASP ALA
SEQRES 24 B 340 LEU LYS ALA ASP ARG ALA GLY VAL LEU ALA GLY HIS ASP
SEQRES 25 B 340 ASN ARG VAL SER CYS LEU GLY VAL THR ASP ASP GLY MET
SEQRES 26 B 340 ALA VAL ALA THR GLY SER TRP ASP SER PHE LEU LYS ILE
SEQRES 27 B 340 TRP ASN
SEQRES 1 A 379 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY
SEQRES 2 A 379 LEU GLU VAL LEU PHE GLN GLY PRO HIS MET ALA SER MET
SEQRES 3 A 379 GLY CYS THR LEU SER ALA GLU ASP LYS ALA ALA VAL GLU
SEQRES 4 A 379 ARG SER LYS MET ILE ASP ARG ASN LEU ARG GLU ASP GLY
SEQRES 5 A 379 GLU LYS ALA ALA ARG GLU VAL LYS LEU LEU LEU LEU GLY
SEQRES 6 A 379 ALA GLY GLU SER GLY LYS SER THR ILE VAL LYS GLN MET
SEQRES 7 A 379 LYS ILE ILE HIS GLU ALA GLY TYR SER GLU GLU GLU CYS
SEQRES 8 A 379 LYS GLN TYR LYS ALA VAL VAL TYR SER ASN THR ILE GLN
SEQRES 9 A 379 SER ILE ILE ALA ILE ILE ARG ALA MET GLY ARG LEU LYS
SEQRES 10 A 379 ILE ASP PHE GLY ASP SER ALA ARG ALA ASP ASP ALA ARG
SEQRES 11 A 379 GLN LEU PHE VAL LEU ALA GLY ALA ALA GLU GLU GLY PHE
SEQRES 12 A 379 MET THR ALA GLU LEU ALA GLY VAL ILE LYS ARG LEU TRP
SEQRES 13 A 379 LYS ASP SER GLY VAL GLN ALA CYS PHE ASN ARG SER ARG
SEQRES 14 A 379 GLU TYR GLN LEU ASN ASP SER ALA ALA TYR TYR LEU ASN
SEQRES 15 A 379 ASP LEU ASP ARG ILE ALA GLN PRO ASN TYR ILE PRO THR
SEQRES 16 A 379 GLN GLN ASP VAL LEU ARG THR ARG VAL LYS THR THR GLY
SEQRES 17 A 379 ILE VAL GLU THR HIS PHE THR PHE LYS ASP LEU HIS PHE
SEQRES 18 A 379 LYS MET PHE ASP VAL GLY ALA GLN ARG SER GLU ARG LYS
SEQRES 19 A 379 LYS TRP ILE HIS CYS PHE GLU GLY VAL THR ALA ILE ILE
SEQRES 20 A 379 PHE CYS VAL ALA LEU SER ASP TYR ASP LEU VAL LEU ALA
SEQRES 21 A 379 GLU ASP GLU GLU MET ASN ARG MET HIS GLU SER MET LYS
SEQRES 22 A 379 LEU PHE ASP SER ILE CYS ASN ASN LYS TRP PHE THR ASP
SEQRES 23 A 379 THR SER ILE ILE LEU PHE LEU ASN LYS LYS ASP LEU PHE
SEQRES 24 A 379 GLU GLU LYS ILE LYS LYS SER PRO LEU THR ILE CYS TYR
SEQRES 25 A 379 PRO GLU TYR ALA GLY SER ASN THR TYR GLU GLU ALA ALA
SEQRES 26 A 379 ALA TYR ILE GLN CYS GLN PHE GLU ASP LEU ASN LYS ARG
SEQRES 27 A 379 LYS ASP THR LYS GLU ILE TYR THR HIS PHE THR CYS ALA
SEQRES 28 A 379 THR ASP THR LYS ASN VAL GLN PHE VAL PHE ASP ALA VAL
SEQRES 29 A 379 THR ASP VAL ILE ILE LYS ASN ASN LEU LYS ASP CYS GLY
SEQRES 30 A 379 LEU PHE
SEQRES 1 G 71 MET ALA SER ASN ASN THR ALA SER ILE ALA GLN ALA ARG
SEQRES 2 G 71 LYS LEU VAL GLU GLN LEU LYS MET GLU ALA ASN ILE ASP
SEQRES 3 G 71 ARG ILE LYS VAL SER LYS ALA ALA ALA ASP LEU MET ALA
SEQRES 4 G 71 TYR CYS GLU ALA HIS ALA LYS GLU ASP PRO LEU LEU THR
SEQRES 5 G 71 PRO VAL PRO ALA SER GLU ASN PRO PHE ARG GLU LYS LYS
SEQRES 6 G 71 PHE PHE SER ALA ILE LEU
SEQRES 1 R 392 ASP TYR LYS ASP ASP ASP ASP LYS ALA ALA ALA GLY PRO
SEQRES 2 R 392 THR SER VAL PRO LEU VAL LYS ALA HIS ARG SER SER VAL
SEQRES 3 R 392 SER ASP TYR VAL ASN TYR ASP ILE ILE VAL ARG HIS TYR
SEQRES 4 R 392 ASN TYR THR GLY LYS LEU ASN ILE SER ALA ASP LYS GLU
SEQRES 5 R 392 ASN SER ILE LYS LEU THR SER VAL VAL PHE ILE LEU ILE
SEQRES 6 R 392 CYS CYS PHE ILE ILE LEU GLU ASN ILE PHE VAL LEU LEU
SEQRES 7 R 392 THR ILE TRP LYS THR LYS LYS PHE HIS ARG PRO MET TYR
SEQRES 8 R 392 TYR PHE ILE GLY ASN LEU ALA LEU SER ASP LEU LEU ALA
SEQRES 9 R 392 GLY VAL ALA TYR THR ALA ASN LEU LEU LEU SER GLY ALA
SEQRES 10 R 392 THR THR TYR LYS LEU THR PRO ALA GLN TRP PHE LEU ARG
SEQRES 11 R 392 GLU GLY SER MET PHE VAL ALA LEU SER ALA SER VAL PHE
SEQRES 12 R 392 SER LEU LEU ALA ILE ALA ILE GLU ARG TYR ILE THR MET
SEQRES 13 R 392 LEU LYS MET LYS LEU HIS ASN GLY SER ASN ASN PHE ARG
SEQRES 14 R 392 LEU PHE LEU LEU ILE SER ALA CYS TRP VAL ILE SER LEU
SEQRES 15 R 392 ILE LEU GLY GLY LEU PRO ILE MET GLY TRP ASN CYS ILE
SEQRES 16 R 392 SER ALA LEU SER SER CYS SER THR VAL LEU PRO LEU TYR
SEQRES 17 R 392 HIS LYS HIS TYR ILE LEU PHE CYS THR THR VAL PHE THR
SEQRES 18 R 392 LEU LEU LEU LEU SER ILE VAL ILE LEU TYR CYS ARG ILE
SEQRES 19 R 392 TYR SER LEU VAL ARG THR ARG SER ARG ARG LEU THR PHE
SEQRES 20 R 392 ARG LYS ASN ILE SER LYS ALA SER ARG SER SER GLU LYS
SEQRES 21 R 392 SER LEU ALA LEU LEU LYS THR VAL ILE ILE VAL LEU SER
SEQRES 22 R 392 VAL PHE ILE ALA CYS TRP ALA PRO LEU PHE ILE LEU LEU
SEQRES 23 R 392 LEU LEU ASP VAL GLY CYS LYS VAL LYS THR CYS ASP ILE
SEQRES 24 R 392 LEU PHE ARG ALA GLU TYR PHE LEU VAL LEU ALA VAL LEU
SEQRES 25 R 392 ASN SER GLY THR ASN PRO ILE ILE TYR THR LEU THR ASN
SEQRES 26 R 392 LYS GLU MET ARG ARG ALA PHE ILE ARG ILE MET SER CYS
SEQRES 27 R 392 CYS LYS CYS PRO SER GLY ASP SER ALA GLY LYS PHE LYS
SEQRES 28 R 392 ARG PRO ILE ILE ALA GLY MET GLU PHE SER ARG SER LYS
SEQRES 29 R 392 SER ASP ASN SER SER HIS PRO GLN LYS ASP GLU GLY ASP
SEQRES 30 R 392 ASN PRO GLU THR ILE MET SER SER GLY ASN VAL ASN SER
SEQRES 31 R 392 SER SER
HET NAG R 401 14
HET J8C R 402 37
HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
HETNAM J8C 1-[[4-[(~{E})-~{N}-[[4-CYCLOHEXYL-3-(TRIFLUOROMETHYL)
HETNAM 2 J8C PHENYL]METHOXY]-~{C}-METHYL-CARBONIMIDOYL]-2-ETHYL-
HETNAM 3 J8C PHENYL]METHYL]AZETIDINE-3-CARBOXYLIC ACID
HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA-
HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO-
HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE
FORMUL 5 NAG C8 H15 N O6
FORMUL 6 J8C C29 H35 F3 N2 O3
HELIX 1 AA1 GLU B 10 ALA B 24 1 15
HELIX 2 AA2 THR B 29 THR B 34 1 6
HELIX 3 AA3 GLU A 8 ALA A 31 1 24
HELIX 4 AA4 GLY A 45 LYS A 54 1 10
HELIX 5 AA5 GLU A 207 GLU A 216 5 10
HELIX 6 AA6 SER A 228 LEU A 232 5 5
HELIX 7 AA7 ASN A 241 ASN A 255 1 15
HELIX 8 AA8 LYS A 270 ILE A 278 1 9
HELIX 9 AA9 PRO A 282 CYS A 286 5 5
HELIX 10 AB1 THR A 295 LEU A 310 1 16
HELIX 11 AB2 LYS A 330 CYS A 351 1 22
HELIX 12 AB3 LYS G 14 ASN G 24 1 11
HELIX 13 AB4 LYS G 29 HIS G 44 1 16
HELIX 14 AB5 ALA G 45 ASP G 48 5 4
HELIX 15 AB6 PRO G 55 ASN G 59 5 5
HELIX 16 AB7 TYR R 22 GLY R 33 1 12
HELIX 17 AB8 LEU R 47 THR R 73 1 27
HELIX 18 AB9 ARG R 78 LEU R 104 1 27
HELIX 19 AC1 SER R 105 THR R 109 5 5
HELIX 20 AC2 THR R 113 MET R 149 1 37
HELIX 21 AC3 ASN R 157 LEU R 177 1 21
HELIX 22 AC4 HIS R 199 ARG R 234 1 36
HELIX 23 AC5 GLU R 249 CYS R 282 1 34
HELIX 24 AC6 ASP R 288 ARG R 292 5 5
HELIX 25 AC7 ALA R 293 THR R 314 1 22
HELIX 26 AC8 GLU R 317 ILE R 323 1 7
SHEET 1 AA1 4 ARG B 46 LEU B 51 0
SHEET 2 AA1 4 LEU B 336 ASN B 340 -1 O ASN B 340 N ARG B 46
SHEET 3 AA1 4 VAL B 327 SER B 331 -1 N VAL B 327 O TRP B 339
SHEET 4 AA1 4 VAL B 315 VAL B 320 -1 N CYS B 317 O GLY B 330
SHEET 1 AA2 4 ILE B 58 TRP B 63 0
SHEET 2 AA2 4 LEU B 69 SER B 74 -1 O ALA B 73 N ALA B 60
SHEET 3 AA2 4 LYS B 78 ASP B 83 -1 O TRP B 82 N LEU B 70
SHEET 4 AA2 4 LYS B 89 PRO B 94 -1 O ILE B 93 N LEU B 79
SHEET 1 AA3 4 VAL B 100 TYR B 105 0
SHEET 2 AA3 4 TYR B 111 GLY B 116 -1 O GLY B 115 N MET B 101
SHEET 3 AA3 4 CYS B 121 ASN B 125 -1 O TYR B 124 N VAL B 112
SHEET 4 AA3 4 ARG B 134 LEU B 139 -1 O ARG B 137 N ILE B 123
SHEET 1 AA4 4 LEU B 146 ASP B 153 0
SHEET 2 AA4 4 GLN B 156 SER B 161 -1 O GLN B 156 N LEU B 152
SHEET 3 AA4 4 THR B 165 ASP B 170 -1 O TRP B 169 N ILE B 157
SHEET 4 AA4 4 GLN B 175 THR B 181 -1 O PHE B 180 N CYS B 166
SHEET 1 AA5 4 VAL B 187 LEU B 192 0
SHEET 2 AA5 4 LEU B 198 ALA B 203 -1 O GLY B 202 N MET B 188
SHEET 3 AA5 4 SER B 207 ASP B 212 -1 O TRP B 211 N PHE B 199
SHEET 4 AA5 4 CYS B 218 THR B 223 -1 O ARG B 219 N LEU B 210
SHEET 1 AA6 4 ILE B 229 PHE B 234 0
SHEET 2 AA6 4 ALA B 240 SER B 245 -1 O ALA B 242 N CYS B 233
SHEET 3 AA6 4 CYS B 250 ASP B 254 -1 O PHE B 253 N PHE B 241
SHEET 4 AA6 4 GLN B 259 TYR B 264 -1 O LEU B 261 N LEU B 252
SHEET 1 AA7 4 ILE B 273 PHE B 278 0
SHEET 2 AA7 4 LEU B 284 TYR B 289 -1 O LEU B 286 N SER B 277
SHEET 3 AA7 4 CYS B 294 ASP B 298 -1 O TRP B 297 N LEU B 285
SHEET 4 AA7 4 ASP B 303 VAL B 307 -1 O GLY B 306 N VAL B 296
SHEET 1 AA8 6 VAL A 185 THR A 190 0
SHEET 2 AA8 6 HIS A 195 ASP A 200 -1 O PHE A 196 N PHE A 189
SHEET 3 AA8 6 GLU A 33 GLY A 40 1 N LEU A 38 O PHE A 199
SHEET 4 AA8 6 ALA A 220 ALA A 226 1 O ILE A 222 N LEU A 39
SHEET 5 AA8 6 SER A 263 ASN A 269 1 O ASN A 269 N VAL A 225
SHEET 6 AA8 6 ILE A 319 PHE A 323 1 O TYR A 320 N LEU A 266
SSBOND 1 CYS R 184 CYS R 191 1555 1555 1.81
SSBOND 2 CYS R 282 CYS R 287 1555 1555 2.02
LINK ND2 ASN R 30 C1 NAG R 401 1555 1555 1.44
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000