HEADER MEMBRANE PROTEIN 30-DEC-21 7TD4 TITLE SPHINGOSINE-1-PHOSPHATE RECEPTOR 1-GI COMPLEX BOUND TO SIPONIMOD COMPND MOL_ID: 1; COMPND 2 MOLECULE: GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)/G(S)/G(T) SUBUNIT COMPND 3 BETA-1; COMPND 4 CHAIN: B; COMPND 5 SYNONYM: TRANSDUCIN BETA CHAIN 1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: GUANINE NUCLEOTIDE-BINDING PROTEIN G(I) SUBUNIT ALPHA-1; COMPND 9 CHAIN: A; COMPND 10 SYNONYM: ADENYLATE CYCLASE-INHIBITING G ALPHA PROTEIN; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)/G(S)/G(O) SUBUNIT COMPND 15 GAMMA-2; COMPND 16 CHAIN: G; COMPND 17 SYNONYM: G GAMMA-I; COMPND 18 ENGINEERED: YES; COMPND 19 MUTATION: YES; COMPND 20 MOL_ID: 4; COMPND 21 MOLECULE: SPHINGOSINE 1-PHOSPHATE RECEPTOR 1; COMPND 22 CHAIN: R; COMPND 23 SYNONYM: S1P RECEPTOR 1,S1P1,ENDOTHELIAL DIFFERENTIATION G-PROTEIN COMPND 24 COUPLED RECEPTOR 1,SPHINGOSINE 1-PHOSPHATE RECEPTOR EDG-1,S1P COMPND 25 RECEPTOR EDG-1; COMPND 26 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 GENE: GNB1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 10 ORGANISM_COMMON: NORWAY RAT; SOURCE 11 ORGANISM_TAXID: 10116; SOURCE 12 GENE: GNAI1, GNAI-1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 17 ORGANISM_COMMON: CATTLE; SOURCE 18 ORGANISM_TAXID: 9913; SOURCE 19 GENE: GNG2; SOURCE 20 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 22 MOL_ID: 4; SOURCE 23 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 24 ORGANISM_COMMON: HUMAN; SOURCE 25 ORGANISM_TAXID: 9606; SOURCE 26 GENE: S1PR1, CHEDG1, EDG1; SOURCE 27 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 28 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS GPCR, COMPLEX, LIPID, MEMBRANE PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR S.LIU,N.PAKNEJAD,L.ZHU,Y.KIHARA,D.RAY,J.CHUN,W.LIU,R.K.HITE,X.Y.HUANG REVDAT 3 09-OCT-24 7TD4 1 REMARK REVDAT 2 23-FEB-22 7TD4 1 JRNL REVDAT 1 09-FEB-22 7TD4 0 JRNL AUTH S.LIU,N.PAKNEJAD,L.ZHU,Y.KIHARA,M.RAY,J.CHUN,W.LIU,R.K.HITE, JRNL AUTH 2 X.Y.HUANG JRNL TITL DIFFERENTIAL ACTIVATION MECHANISMS OF LIPID GPCRS BY JRNL TITL 2 LYSOPHOSPHATIDIC ACID AND SPHINGOSINE 1-PHOSPHATE. JRNL REF NAT COMMUN V. 13 731 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 35136060 JRNL DOI 10.1038/S41467-022-28417-2 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.600 REMARK 3 NUMBER OF PARTICLES : 178997 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7TD4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1000262075. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : COMPLEX OF SPHINGOSINE-1 REMARK 245 -PHOSPHATE RECEPTOR 1 WITH G- REMARK 245 PROTEIN AND SIPONIMOD REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 2340.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, G, R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLU B 3 REMARK 465 LEU B 4 REMARK 465 ASP B 5 REMARK 465 GLN B 6 REMARK 465 LEU B 7 REMARK 465 ARG B 8 REMARK 465 GLN B 9 REMARK 465 MET A -24 REMARK 465 GLY A -23 REMARK 465 SER A -22 REMARK 465 SER A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 LEU A -11 REMARK 465 GLU A -10 REMARK 465 VAL A -9 REMARK 465 LEU A -8 REMARK 465 PHE A -7 REMARK 465 GLN A -6 REMARK 465 GLY A -5 REMARK 465 PRO A -4 REMARK 465 HIS A -3 REMARK 465 MET A -2 REMARK 465 ALA A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 CYS A 3 REMARK 465 THR A 4 REMARK 465 LEU A 5 REMARK 465 SER A 6 REMARK 465 ILE A 56 REMARK 465 HIS A 57 REMARK 465 GLU A 58 REMARK 465 ALA A 59 REMARK 465 GLY A 60 REMARK 465 TYR A 61 REMARK 465 SER A 62 REMARK 465 GLU A 63 REMARK 465 GLU A 64 REMARK 465 GLU A 65 REMARK 465 CYS A 66 REMARK 465 LYS A 67 REMARK 465 GLN A 68 REMARK 465 TYR A 69 REMARK 465 LYS A 70 REMARK 465 ALA A 71 REMARK 465 VAL A 72 REMARK 465 VAL A 73 REMARK 465 TYR A 74 REMARK 465 SER A 75 REMARK 465 ASN A 76 REMARK 465 THR A 77 REMARK 465 ILE A 78 REMARK 465 GLN A 79 REMARK 465 SER A 80 REMARK 465 ILE A 81 REMARK 465 ILE A 82 REMARK 465 ALA A 83 REMARK 465 ILE A 84 REMARK 465 ILE A 85 REMARK 465 ARG A 86 REMARK 465 ALA A 87 REMARK 465 MET A 88 REMARK 465 GLY A 89 REMARK 465 ARG A 90 REMARK 465 LEU A 91 REMARK 465 LYS A 92 REMARK 465 ILE A 93 REMARK 465 ASP A 94 REMARK 465 PHE A 95 REMARK 465 GLY A 96 REMARK 465 ASP A 97 REMARK 465 SER A 98 REMARK 465 ALA A 99 REMARK 465 ARG A 100 REMARK 465 ALA A 101 REMARK 465 ASP A 102 REMARK 465 ASP A 103 REMARK 465 ALA A 104 REMARK 465 ARG A 105 REMARK 465 GLN A 106 REMARK 465 LEU A 107 REMARK 465 PHE A 108 REMARK 465 VAL A 109 REMARK 465 LEU A 110 REMARK 465 ALA A 111 REMARK 465 GLY A 112 REMARK 465 ALA A 113 REMARK 465 ALA A 114 REMARK 465 GLU A 115 REMARK 465 GLU A 116 REMARK 465 GLY A 117 REMARK 465 PHE A 118 REMARK 465 MET A 119 REMARK 465 THR A 120 REMARK 465 ALA A 121 REMARK 465 GLU A 122 REMARK 465 LEU A 123 REMARK 465 ALA A 124 REMARK 465 GLY A 125 REMARK 465 VAL A 126 REMARK 465 ILE A 127 REMARK 465 LYS A 128 REMARK 465 ARG A 129 REMARK 465 LEU A 130 REMARK 465 TRP A 131 REMARK 465 LYS A 132 REMARK 465 ASP A 133 REMARK 465 SER A 134 REMARK 465 GLY A 135 REMARK 465 VAL A 136 REMARK 465 GLN A 137 REMARK 465 ALA A 138 REMARK 465 CYS A 139 REMARK 465 PHE A 140 REMARK 465 ASN A 141 REMARK 465 ARG A 142 REMARK 465 SER A 143 REMARK 465 ARG A 144 REMARK 465 GLU A 145 REMARK 465 TYR A 146 REMARK 465 GLN A 147 REMARK 465 LEU A 148 REMARK 465 ASN A 149 REMARK 465 ASP A 150 REMARK 465 SER A 151 REMARK 465 ALA A 152 REMARK 465 ALA A 153 REMARK 465 TYR A 154 REMARK 465 TYR A 155 REMARK 465 LEU A 156 REMARK 465 ASN A 157 REMARK 465 ASP A 158 REMARK 465 LEU A 159 REMARK 465 ASP A 160 REMARK 465 ARG A 161 REMARK 465 ILE A 162 REMARK 465 ALA A 163 REMARK 465 GLN A 164 REMARK 465 PRO A 165 REMARK 465 ASN A 166 REMARK 465 TYR A 167 REMARK 465 ILE A 168 REMARK 465 PRO A 169 REMARK 465 THR A 170 REMARK 465 GLN A 171 REMARK 465 GLN A 172 REMARK 465 ASP A 173 REMARK 465 VAL A 174 REMARK 465 LEU A 175 REMARK 465 ARG A 176 REMARK 465 THR A 177 REMARK 465 ARG A 178 REMARK 465 VAL A 179 REMARK 465 LYS A 180 REMARK 465 THR A 181 REMARK 465 MET G 1 REMARK 465 ALA G 2 REMARK 465 SER G 3 REMARK 465 ASN G 4 REMARK 465 ASN G 5 REMARK 465 THR G 6 REMARK 465 ALA G 7 REMARK 465 SER G 8 REMARK 465 ILE G 9 REMARK 465 ALA G 10 REMARK 465 GLN G 11 REMARK 465 ALA G 12 REMARK 465 LYS G 64 REMARK 465 LYS G 65 REMARK 465 PHE G 66 REMARK 465 PHE G 67 REMARK 465 SER G 68 REMARK 465 ALA G 69 REMARK 465 ILE G 70 REMARK 465 LEU G 71 REMARK 465 ASP R -9 REMARK 465 TYR R -8 REMARK 465 LYS R -7 REMARK 465 ASP R -6 REMARK 465 ASP R -5 REMARK 465 ASP R -4 REMARK 465 ASP R -3 REMARK 465 LYS R -2 REMARK 465 ALA R -1 REMARK 465 ALA R 0 REMARK 465 ALA R 1 REMARK 465 GLY R 2 REMARK 465 PRO R 3 REMARK 465 THR R 4 REMARK 465 SER R 5 REMARK 465 VAL R 6 REMARK 465 PRO R 7 REMARK 465 LEU R 8 REMARK 465 VAL R 9 REMARK 465 LYS R 10 REMARK 465 ALA R 11 REMARK 465 HIS R 12 REMARK 465 ARG R 13 REMARK 465 SER R 14 REMARK 465 SER R 15 REMARK 465 VAL R 16 REMARK 465 SER R 17 REMARK 465 ILE R 37 REMARK 465 SER R 38 REMARK 465 ALA R 39 REMARK 465 ASP R 40 REMARK 465 LYS R 41 REMARK 465 GLU R 42 REMARK 465 ASN R 43 REMARK 465 SER R 44 REMARK 465 ASN R 240 REMARK 465 ILE R 241 REMARK 465 SER R 242 REMARK 465 LYS R 243 REMARK 465 ALA R 244 REMARK 465 SER R 245 REMARK 465 ARG R 246 REMARK 465 SER R 247 REMARK 465 ARG R 324 REMARK 465 ILE R 325 REMARK 465 MET R 326 REMARK 465 SER R 327 REMARK 465 CYS R 328 REMARK 465 CYS R 329 REMARK 465 LYS R 330 REMARK 465 CYS R 331 REMARK 465 PRO R 332 REMARK 465 SER R 333 REMARK 465 GLY R 334 REMARK 465 ASP R 335 REMARK 465 SER R 336 REMARK 465 ALA R 337 REMARK 465 GLY R 338 REMARK 465 LYS R 339 REMARK 465 PHE R 340 REMARK 465 LYS R 341 REMARK 465 ARG R 342 REMARK 465 PRO R 343 REMARK 465 ILE R 344 REMARK 465 ILE R 345 REMARK 465 ALA R 346 REMARK 465 GLY R 347 REMARK 465 MET R 348 REMARK 465 GLU R 349 REMARK 465 PHE R 350 REMARK 465 SER R 351 REMARK 465 ARG R 352 REMARK 465 SER R 353 REMARK 465 LYS R 354 REMARK 465 SER R 355 REMARK 465 ASP R 356 REMARK 465 ASN R 357 REMARK 465 SER R 358 REMARK 465 SER R 359 REMARK 465 HIS R 360 REMARK 465 PRO R 361 REMARK 465 GLN R 362 REMARK 465 LYS R 363 REMARK 465 ASP R 364 REMARK 465 GLU R 365 REMARK 465 GLY R 366 REMARK 465 ASP R 367 REMARK 465 ASN R 368 REMARK 465 PRO R 369 REMARK 465 GLU R 370 REMARK 465 THR R 371 REMARK 465 ILE R 372 REMARK 465 MET R 373 REMARK 465 SER R 374 REMARK 465 SER R 375 REMARK 465 GLY R 376 REMARK 465 ASN R 377 REMARK 465 VAL R 378 REMARK 465 ASN R 379 REMARK 465 SER R 380 REMARK 465 SER R 381 REMARK 465 SER R 382 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 10 CG CD OE1 OE2 REMARK 470 GLU B 12 CG CD OE1 OE2 REMARK 470 LYS B 15 CG CD CE NZ REMARK 470 ARG B 22 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 23 CG CD CE NZ REMARK 470 GLN B 32 CG CD OE1 NE2 REMARK 470 ASP B 38 CG OD1 OD2 REMARK 470 ARG B 42 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 130 CG CD OE1 OE2 REMARK 470 ASP B 258 CG OD1 OD2 REMARK 470 GLU A 8 CG CD OE1 OE2 REMARK 470 GLU A 43 CG CD OE1 OE2 REMARK 470 ARG A 205 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 237 CG OD1 OD2 REMARK 470 GLU A 238 CG CD OE1 OE2 REMARK 470 GLU A 239 CG CD OE1 OE2 REMARK 470 LYS A 280 CG CD CE NZ REMARK 470 GLU A 289 CG CD OE1 OE2 REMARK 470 SER A 293 OG REMARK 470 CYS A 325 SG REMARK 470 THR A 327 OG1 CG2 REMARK 470 ARG G 13 CG CD NE CZ NH1 NH2 REMARK 470 GLU G 17 CG CD OE1 OE2 REMARK 470 GLU G 22 CG CD OE1 OE2 REMARK 470 ASN G 24 CG OD1 ND2 REMARK 470 ASP G 26 CG OD1 OD2 REMARK 470 LYS G 29 CG CD CE NZ REMARK 470 LYS G 46 CG CD CE NZ REMARK 470 GLU G 58 CG CD OE1 OE2 REMARK 470 ASN R 21 CG OD1 ND2 REMARK 470 ASN R 36 CG OD1 ND2 REMARK 470 LYS R 46 CG CD CE NZ REMARK 470 LEU R 47 CG CD1 CD2 REMARK 470 VAL R 50 CG1 CG2 REMARK 470 LEU R 54 CG CD1 CD2 REMARK 470 CYS R 57 SG REMARK 470 LEU R 61 CG CD1 CD2 REMARK 470 LEU R 68 CG CD1 CD2 REMARK 470 LYS R 72 CG CD CE NZ REMARK 470 LYS R 74 CG CD CE NZ REMARK 470 LYS R 75 CG CD CE NZ REMARK 470 LYS R 111 CG CD CE NZ REMARK 470 SER R 155 OG REMARK 470 LEU R 160 CG CD1 CD2 REMARK 470 PHE R 161 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG R 223 CG CD NE CZ NH1 NH2 REMARK 470 ARG R 238 CG CD NE CZ NH1 NH2 REMARK 470 LYS R 239 CG CD CE NZ REMARK 470 SER R 248 OG REMARK 470 GLU R 249 CG CD OE1 OE2 REMARK 470 LEU R 255 CG CD1 CD2 REMARK 470 LYS R 256 CG CD CE NZ REMARK 470 LYS R 283 CG CD CE NZ REMARK 470 ARG R 292 CG CD NE CZ NH1 NH2 REMARK 470 LYS R 316 CG CD CE NZ REMARK 470 GLU R 317 CG CD OE1 OE2 REMARK 470 ARG R 320 CG CD NE CZ NH1 NH2 REMARK 470 PHE R 322 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE R 323 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP B 99 54.39 -93.29 REMARK 500 SER B 227 -167.94 -167.39 REMARK 500 PHE B 292 6.98 81.97 REMARK 500 SER B 334 13.81 81.26 REMARK 500 TYR A 287 71.57 61.54 REMARK 500 LYS A 314 0.73 -69.37 REMARK 500 THR A 329 8.53 82.10 REMARK 500 THR R 286 -43.09 -130.69 REMARK 500 ARG R 292 57.41 -96.51 REMARK 500 GLU R 317 -30.02 -130.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-25823 RELATED DB: EMDB REMARK 900 SPHINGOSINE-1-PHOSPHATE RECEPTOR 1-GI COMPLEX BOUND TO SIPONIMOD DBREF 7TD4 B 1 340 UNP P62871 GBB1_BOVIN 1 340 DBREF 7TD4 A 1 354 UNP B2RSH2 GNAI1_MOUSE 1 354 DBREF 7TD4 G 1 71 UNP P63212 GBG2_BOVIN 1 71 DBREF 7TD4 R 2 382 UNP P21453 S1PR1_HUMAN 2 382 SEQADV 7TD4 MET A -24 UNP B2RSH2 INITIATING METHIONINE SEQADV 7TD4 GLY A -23 UNP B2RSH2 EXPRESSION TAG SEQADV 7TD4 SER A -22 UNP B2RSH2 EXPRESSION TAG SEQADV 7TD4 SER A -21 UNP B2RSH2 EXPRESSION TAG SEQADV 7TD4 HIS A -20 UNP B2RSH2 EXPRESSION TAG SEQADV 7TD4 HIS A -19 UNP B2RSH2 EXPRESSION TAG SEQADV 7TD4 HIS A -18 UNP B2RSH2 EXPRESSION TAG SEQADV 7TD4 HIS A -17 UNP B2RSH2 EXPRESSION TAG SEQADV 7TD4 HIS A -16 UNP B2RSH2 EXPRESSION TAG SEQADV 7TD4 HIS A -15 UNP B2RSH2 EXPRESSION TAG SEQADV 7TD4 SER A -14 UNP B2RSH2 EXPRESSION TAG SEQADV 7TD4 SER A -13 UNP B2RSH2 EXPRESSION TAG SEQADV 7TD4 GLY A -12 UNP B2RSH2 EXPRESSION TAG SEQADV 7TD4 LEU A -11 UNP B2RSH2 EXPRESSION TAG SEQADV 7TD4 GLU A -10 UNP B2RSH2 EXPRESSION TAG SEQADV 7TD4 VAL A -9 UNP B2RSH2 EXPRESSION TAG SEQADV 7TD4 LEU A -8 UNP B2RSH2 EXPRESSION TAG SEQADV 7TD4 PHE A -7 UNP B2RSH2 EXPRESSION TAG SEQADV 7TD4 GLN A -6 UNP B2RSH2 EXPRESSION TAG SEQADV 7TD4 GLY A -5 UNP B2RSH2 EXPRESSION TAG SEQADV 7TD4 PRO A -4 UNP B2RSH2 EXPRESSION TAG SEQADV 7TD4 HIS A -3 UNP B2RSH2 EXPRESSION TAG SEQADV 7TD4 MET A -2 UNP B2RSH2 EXPRESSION TAG SEQADV 7TD4 ALA A -1 UNP B2RSH2 EXPRESSION TAG SEQADV 7TD4 SER A 0 UNP B2RSH2 EXPRESSION TAG SEQADV 7TD4 ALA A 203 UNP B2RSH2 GLY 203 ENGINEERED MUTATION SEQADV 7TD4 SER G 68 UNP P63212 CYS 68 ENGINEERED MUTATION SEQADV 7TD4 ASP R -9 UNP P21453 EXPRESSION TAG SEQADV 7TD4 TYR R -8 UNP P21453 EXPRESSION TAG SEQADV 7TD4 LYS R -7 UNP P21453 EXPRESSION TAG SEQADV 7TD4 ASP R -6 UNP P21453 EXPRESSION TAG SEQADV 7TD4 ASP R -5 UNP P21453 EXPRESSION TAG SEQADV 7TD4 ASP R -4 UNP P21453 EXPRESSION TAG SEQADV 7TD4 ASP R -3 UNP P21453 EXPRESSION TAG SEQADV 7TD4 LYS R -2 UNP P21453 EXPRESSION TAG SEQADV 7TD4 ALA R -1 UNP P21453 EXPRESSION TAG SEQADV 7TD4 ALA R 0 UNP P21453 EXPRESSION TAG SEQADV 7TD4 ALA R 1 UNP P21453 EXPRESSION TAG SEQRES 1 B 340 MET SER GLU LEU ASP GLN LEU ARG GLN GLU ALA GLU GLN SEQRES 2 B 340 LEU LYS ASN GLN ILE ARG ASP ALA ARG LYS ALA CYS ALA SEQRES 3 B 340 ASP ALA THR LEU SER GLN ILE THR ASN ASN ILE ASP PRO SEQRES 4 B 340 VAL GLY ARG ILE GLN MET ARG THR ARG ARG THR LEU ARG SEQRES 5 B 340 GLY HIS LEU ALA LYS ILE TYR ALA MET HIS TRP GLY THR SEQRES 6 B 340 ASP SER ARG LEU LEU VAL SER ALA SER GLN ASP GLY LYS SEQRES 7 B 340 LEU ILE ILE TRP ASP SER TYR THR THR ASN LYS VAL HIS SEQRES 8 B 340 ALA ILE PRO LEU ARG SER SER TRP VAL MET THR CYS ALA SEQRES 9 B 340 TYR ALA PRO SER GLY ASN TYR VAL ALA CYS GLY GLY LEU SEQRES 10 B 340 ASP ASN ILE CYS SER ILE TYR ASN LEU LYS THR ARG GLU SEQRES 11 B 340 GLY ASN VAL ARG VAL SER ARG GLU LEU ALA GLY HIS THR SEQRES 12 B 340 GLY TYR LEU SER CYS CYS ARG PHE LEU ASP ASP ASN GLN SEQRES 13 B 340 ILE VAL THR SER SER GLY ASP THR THR CYS ALA LEU TRP SEQRES 14 B 340 ASP ILE GLU THR GLY GLN GLN THR THR THR PHE THR GLY SEQRES 15 B 340 HIS THR GLY ASP VAL MET SER LEU SER LEU ALA PRO ASP SEQRES 16 B 340 THR ARG LEU PHE VAL SER GLY ALA CYS ASP ALA SER ALA SEQRES 17 B 340 LYS LEU TRP ASP VAL ARG GLU GLY MET CYS ARG GLN THR SEQRES 18 B 340 PHE THR GLY HIS GLU SER ASP ILE ASN ALA ILE CYS PHE SEQRES 19 B 340 PHE PRO ASN GLY ASN ALA PHE ALA THR GLY SER ASP ASP SEQRES 20 B 340 ALA THR CYS ARG LEU PHE ASP LEU ARG ALA ASP GLN GLU SEQRES 21 B 340 LEU MET THR TYR SER HIS ASP ASN ILE ILE CYS GLY ILE SEQRES 22 B 340 THR SER VAL SER PHE SER LYS SER GLY ARG LEU LEU LEU SEQRES 23 B 340 ALA GLY TYR ASP ASP PHE ASN CYS ASN VAL TRP ASP ALA SEQRES 24 B 340 LEU LYS ALA ASP ARG ALA GLY VAL LEU ALA GLY HIS ASP SEQRES 25 B 340 ASN ARG VAL SER CYS LEU GLY VAL THR ASP ASP GLY MET SEQRES 26 B 340 ALA VAL ALA THR GLY SER TRP ASP SER PHE LEU LYS ILE SEQRES 27 B 340 TRP ASN SEQRES 1 A 379 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 379 LEU GLU VAL LEU PHE GLN GLY PRO HIS MET ALA SER MET SEQRES 3 A 379 GLY CYS THR LEU SER ALA GLU ASP LYS ALA ALA VAL GLU SEQRES 4 A 379 ARG SER LYS MET ILE ASP ARG ASN LEU ARG GLU ASP GLY SEQRES 5 A 379 GLU LYS ALA ALA ARG GLU VAL LYS LEU LEU LEU LEU GLY SEQRES 6 A 379 ALA GLY GLU SER GLY LYS SER THR ILE VAL LYS GLN MET SEQRES 7 A 379 LYS ILE ILE HIS GLU ALA GLY TYR SER GLU GLU GLU CYS SEQRES 8 A 379 LYS GLN TYR LYS ALA VAL VAL TYR SER ASN THR ILE GLN SEQRES 9 A 379 SER ILE ILE ALA ILE ILE ARG ALA MET GLY ARG LEU LYS SEQRES 10 A 379 ILE ASP PHE GLY ASP SER ALA ARG ALA ASP ASP ALA ARG SEQRES 11 A 379 GLN LEU PHE VAL LEU ALA GLY ALA ALA GLU GLU GLY PHE SEQRES 12 A 379 MET THR ALA GLU LEU ALA GLY VAL ILE LYS ARG LEU TRP SEQRES 13 A 379 LYS ASP SER GLY VAL GLN ALA CYS PHE ASN ARG SER ARG SEQRES 14 A 379 GLU TYR GLN LEU ASN ASP SER ALA ALA TYR TYR LEU ASN SEQRES 15 A 379 ASP LEU ASP ARG ILE ALA GLN PRO ASN TYR ILE PRO THR SEQRES 16 A 379 GLN GLN ASP VAL LEU ARG THR ARG VAL LYS THR THR GLY SEQRES 17 A 379 ILE VAL GLU THR HIS PHE THR PHE LYS ASP LEU HIS PHE SEQRES 18 A 379 LYS MET PHE ASP VAL GLY ALA GLN ARG SER GLU ARG LYS SEQRES 19 A 379 LYS TRP ILE HIS CYS PHE GLU GLY VAL THR ALA ILE ILE SEQRES 20 A 379 PHE CYS VAL ALA LEU SER ASP TYR ASP LEU VAL LEU ALA SEQRES 21 A 379 GLU ASP GLU GLU MET ASN ARG MET HIS GLU SER MET LYS SEQRES 22 A 379 LEU PHE ASP SER ILE CYS ASN ASN LYS TRP PHE THR ASP SEQRES 23 A 379 THR SER ILE ILE LEU PHE LEU ASN LYS LYS ASP LEU PHE SEQRES 24 A 379 GLU GLU LYS ILE LYS LYS SER PRO LEU THR ILE CYS TYR SEQRES 25 A 379 PRO GLU TYR ALA GLY SER ASN THR TYR GLU GLU ALA ALA SEQRES 26 A 379 ALA TYR ILE GLN CYS GLN PHE GLU ASP LEU ASN LYS ARG SEQRES 27 A 379 LYS ASP THR LYS GLU ILE TYR THR HIS PHE THR CYS ALA SEQRES 28 A 379 THR ASP THR LYS ASN VAL GLN PHE VAL PHE ASP ALA VAL SEQRES 29 A 379 THR ASP VAL ILE ILE LYS ASN ASN LEU LYS ASP CYS GLY SEQRES 30 A 379 LEU PHE SEQRES 1 G 71 MET ALA SER ASN ASN THR ALA SER ILE ALA GLN ALA ARG SEQRES 2 G 71 LYS LEU VAL GLU GLN LEU LYS MET GLU ALA ASN ILE ASP SEQRES 3 G 71 ARG ILE LYS VAL SER LYS ALA ALA ALA ASP LEU MET ALA SEQRES 4 G 71 TYR CYS GLU ALA HIS ALA LYS GLU ASP PRO LEU LEU THR SEQRES 5 G 71 PRO VAL PRO ALA SER GLU ASN PRO PHE ARG GLU LYS LYS SEQRES 6 G 71 PHE PHE SER ALA ILE LEU SEQRES 1 R 392 ASP TYR LYS ASP ASP ASP ASP LYS ALA ALA ALA GLY PRO SEQRES 2 R 392 THR SER VAL PRO LEU VAL LYS ALA HIS ARG SER SER VAL SEQRES 3 R 392 SER ASP TYR VAL ASN TYR ASP ILE ILE VAL ARG HIS TYR SEQRES 4 R 392 ASN TYR THR GLY LYS LEU ASN ILE SER ALA ASP LYS GLU SEQRES 5 R 392 ASN SER ILE LYS LEU THR SER VAL VAL PHE ILE LEU ILE SEQRES 6 R 392 CYS CYS PHE ILE ILE LEU GLU ASN ILE PHE VAL LEU LEU SEQRES 7 R 392 THR ILE TRP LYS THR LYS LYS PHE HIS ARG PRO MET TYR SEQRES 8 R 392 TYR PHE ILE GLY ASN LEU ALA LEU SER ASP LEU LEU ALA SEQRES 9 R 392 GLY VAL ALA TYR THR ALA ASN LEU LEU LEU SER GLY ALA SEQRES 10 R 392 THR THR TYR LYS LEU THR PRO ALA GLN TRP PHE LEU ARG SEQRES 11 R 392 GLU GLY SER MET PHE VAL ALA LEU SER ALA SER VAL PHE SEQRES 12 R 392 SER LEU LEU ALA ILE ALA ILE GLU ARG TYR ILE THR MET SEQRES 13 R 392 LEU LYS MET LYS LEU HIS ASN GLY SER ASN ASN PHE ARG SEQRES 14 R 392 LEU PHE LEU LEU ILE SER ALA CYS TRP VAL ILE SER LEU SEQRES 15 R 392 ILE LEU GLY GLY LEU PRO ILE MET GLY TRP ASN CYS ILE SEQRES 16 R 392 SER ALA LEU SER SER CYS SER THR VAL LEU PRO LEU TYR SEQRES 17 R 392 HIS LYS HIS TYR ILE LEU PHE CYS THR THR VAL PHE THR SEQRES 18 R 392 LEU LEU LEU LEU SER ILE VAL ILE LEU TYR CYS ARG ILE SEQRES 19 R 392 TYR SER LEU VAL ARG THR ARG SER ARG ARG LEU THR PHE SEQRES 20 R 392 ARG LYS ASN ILE SER LYS ALA SER ARG SER SER GLU LYS SEQRES 21 R 392 SER LEU ALA LEU LEU LYS THR VAL ILE ILE VAL LEU SER SEQRES 22 R 392 VAL PHE ILE ALA CYS TRP ALA PRO LEU PHE ILE LEU LEU SEQRES 23 R 392 LEU LEU ASP VAL GLY CYS LYS VAL LYS THR CYS ASP ILE SEQRES 24 R 392 LEU PHE ARG ALA GLU TYR PHE LEU VAL LEU ALA VAL LEU SEQRES 25 R 392 ASN SER GLY THR ASN PRO ILE ILE TYR THR LEU THR ASN SEQRES 26 R 392 LYS GLU MET ARG ARG ALA PHE ILE ARG ILE MET SER CYS SEQRES 27 R 392 CYS LYS CYS PRO SER GLY ASP SER ALA GLY LYS PHE LYS SEQRES 28 R 392 ARG PRO ILE ILE ALA GLY MET GLU PHE SER ARG SER LYS SEQRES 29 R 392 SER ASP ASN SER SER HIS PRO GLN LYS ASP GLU GLY ASP SEQRES 30 R 392 ASN PRO GLU THR ILE MET SER SER GLY ASN VAL ASN SER SEQRES 31 R 392 SER SER HET NAG R 401 14 HET J8C R 402 37 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM J8C 1-[[4-[(~{E})-~{N}-[[4-CYCLOHEXYL-3-(TRIFLUOROMETHYL) HETNAM 2 J8C PHENYL]METHOXY]-~{C}-METHYL-CARBONIMIDOYL]-2-ETHYL- HETNAM 3 J8C PHENYL]METHYL]AZETIDINE-3-CARBOXYLIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 5 NAG C8 H15 N O6 FORMUL 6 J8C C29 H35 F3 N2 O3 HELIX 1 AA1 GLU B 10 ALA B 24 1 15 HELIX 2 AA2 THR B 29 THR B 34 1 6 HELIX 3 AA3 GLU A 8 ALA A 31 1 24 HELIX 4 AA4 GLY A 45 LYS A 54 1 10 HELIX 5 AA5 GLU A 207 GLU A 216 5 10 HELIX 6 AA6 SER A 228 LEU A 232 5 5 HELIX 7 AA7 ASN A 241 ASN A 255 1 15 HELIX 8 AA8 LYS A 270 ILE A 278 1 9 HELIX 9 AA9 PRO A 282 CYS A 286 5 5 HELIX 10 AB1 THR A 295 LEU A 310 1 16 HELIX 11 AB2 LYS A 330 CYS A 351 1 22 HELIX 12 AB3 LYS G 14 ASN G 24 1 11 HELIX 13 AB4 LYS G 29 HIS G 44 1 16 HELIX 14 AB5 ALA G 45 ASP G 48 5 4 HELIX 15 AB6 PRO G 55 ASN G 59 5 5 HELIX 16 AB7 TYR R 22 GLY R 33 1 12 HELIX 17 AB8 LEU R 47 THR R 73 1 27 HELIX 18 AB9 ARG R 78 LEU R 104 1 27 HELIX 19 AC1 SER R 105 THR R 109 5 5 HELIX 20 AC2 THR R 113 MET R 149 1 37 HELIX 21 AC3 ASN R 157 LEU R 177 1 21 HELIX 22 AC4 HIS R 199 ARG R 234 1 36 HELIX 23 AC5 GLU R 249 CYS R 282 1 34 HELIX 24 AC6 ASP R 288 ARG R 292 5 5 HELIX 25 AC7 ALA R 293 THR R 314 1 22 HELIX 26 AC8 GLU R 317 ILE R 323 1 7 SHEET 1 AA1 4 ARG B 46 LEU B 51 0 SHEET 2 AA1 4 LEU B 336 ASN B 340 -1 O ASN B 340 N ARG B 46 SHEET 3 AA1 4 VAL B 327 SER B 331 -1 N VAL B 327 O TRP B 339 SHEET 4 AA1 4 VAL B 315 VAL B 320 -1 N CYS B 317 O GLY B 330 SHEET 1 AA2 4 ILE B 58 TRP B 63 0 SHEET 2 AA2 4 LEU B 69 SER B 74 -1 O ALA B 73 N ALA B 60 SHEET 3 AA2 4 LYS B 78 ASP B 83 -1 O TRP B 82 N LEU B 70 SHEET 4 AA2 4 LYS B 89 PRO B 94 -1 O ILE B 93 N LEU B 79 SHEET 1 AA3 4 VAL B 100 TYR B 105 0 SHEET 2 AA3 4 TYR B 111 GLY B 116 -1 O GLY B 115 N MET B 101 SHEET 3 AA3 4 CYS B 121 ASN B 125 -1 O TYR B 124 N VAL B 112 SHEET 4 AA3 4 ARG B 134 LEU B 139 -1 O ARG B 137 N ILE B 123 SHEET 1 AA4 4 LEU B 146 ASP B 153 0 SHEET 2 AA4 4 GLN B 156 SER B 161 -1 O GLN B 156 N LEU B 152 SHEET 3 AA4 4 THR B 165 ASP B 170 -1 O TRP B 169 N ILE B 157 SHEET 4 AA4 4 GLN B 175 THR B 181 -1 O PHE B 180 N CYS B 166 SHEET 1 AA5 4 VAL B 187 LEU B 192 0 SHEET 2 AA5 4 LEU B 198 ALA B 203 -1 O GLY B 202 N MET B 188 SHEET 3 AA5 4 SER B 207 ASP B 212 -1 O TRP B 211 N PHE B 199 SHEET 4 AA5 4 CYS B 218 THR B 223 -1 O ARG B 219 N LEU B 210 SHEET 1 AA6 4 ILE B 229 PHE B 234 0 SHEET 2 AA6 4 ALA B 240 SER B 245 -1 O ALA B 242 N CYS B 233 SHEET 3 AA6 4 CYS B 250 ASP B 254 -1 O PHE B 253 N PHE B 241 SHEET 4 AA6 4 GLN B 259 TYR B 264 -1 O LEU B 261 N LEU B 252 SHEET 1 AA7 4 ILE B 273 PHE B 278 0 SHEET 2 AA7 4 LEU B 284 TYR B 289 -1 O LEU B 286 N SER B 277 SHEET 3 AA7 4 CYS B 294 ASP B 298 -1 O TRP B 297 N LEU B 285 SHEET 4 AA7 4 ASP B 303 VAL B 307 -1 O GLY B 306 N VAL B 296 SHEET 1 AA8 6 VAL A 185 THR A 190 0 SHEET 2 AA8 6 HIS A 195 ASP A 200 -1 O PHE A 196 N PHE A 189 SHEET 3 AA8 6 GLU A 33 GLY A 40 1 N LEU A 38 O PHE A 199 SHEET 4 AA8 6 ALA A 220 ALA A 226 1 O ILE A 222 N LEU A 39 SHEET 5 AA8 6 SER A 263 ASN A 269 1 O ASN A 269 N VAL A 225 SHEET 6 AA8 6 ILE A 319 PHE A 323 1 O TYR A 320 N LEU A 266 SSBOND 1 CYS R 184 CYS R 191 1555 1555 1.81 SSBOND 2 CYS R 282 CYS R 287 1555 1555 2.02 LINK ND2 ASN R 30 C1 NAG R 401 1555 1555 1.44 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000