HEADER DNA BINDING PROTEIN/DNA 04-JAN-22 7TEC TITLE STRUCTURE OF THE LISTERIA MONOCYTOGENES GLNR-DNA COMPLEX TO 3.45 TITLE 2 ANGSTROM COMPND MOL_ID: 1; COMPND 2 MOLECULE: HTH-TYPE TRANSCRIPTIONAL REGULATOR GLNR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MERR FAMILY TRANSCRIPTIONAL REGULATOR; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'- COMPND 8 D(*CP*GP*TP*GP*TP*CP*AP*GP*AP*TP*AP*AP*TP*CP*TP*GP*AP*CP*AP*CP*G)- COMPND 9 3'); COMPND 10 CHAIN: H; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; SOURCE 3 ORGANISM_TAXID: 1639; SOURCE 4 GENE: GLNR, A8L61_07010, ABZ57_05085, AF006_07180, AF817_01990, SOURCE 5 AMC55_04605, APD94_02400, ART25_07755, ARV28_05490, ARV77_10415, SOURCE 6 B1N06_02425, B1N38_06025, B1N40_09865, B1N52_08095, B1N70_08585, SOURCE 7 B1N71_01820, B1O10_02055, B1O25_08310, B2H14_10505, B4X79_13085, SOURCE 8 B4Y29_01290, B4Y40_11845, B4Y47_05380, B4Y49_02050, B4Y56_02055, SOURCE 9 B4Y57_02055, B5K54_13065, B6112_07615, B6O07_10740, BB997_08390, SOURCE 10 BCZ19_06080, BW273_06570, C6S26_02850, CW834_10150, CW845_07630, SOURCE 11 CW895_11495, CX098_14230, D4164_01995, D4271_02955, D4900_04675, SOURCE 12 D4920_02385, D4947_02360, D4C60_03330, D4D22_02955, D4D89_02780, SOURCE 13 D4U00_01965, D4U23_10015, D5M63_02050, D5N24_04355, D6P18_02820, SOURCE 14 D7104_08235, DCK28_08790, DCT16_08455, E0I39_02830, E1V33_00335, SOURCE 15 E1W43_05380, E1W56_05615, E3W32_09810, E5F58_10230, E5H26_02070, SOURCE 16 EPC87_01440, EX365_07695, EXZ73_06750, EYY39_05995, F3O35_05110, SOURCE 17 F3R75_05795, F6436_09515, F6515_11560, FA835_14895, FC284_14445, SOURCE 18 FJU19_02820, FL871_07620, FLQ97_14195, FLR03_05055, FLR11_13675, SOURCE 19 FNX31_12240, FNX40_10035, FORC68_1320, FR217_04555, FV747_02470, SOURCE 20 G3O21_002452, G3R95_000630, GEK29_02375, GFK29_08620, GH165_00575, SOURCE 21 GHH22_03975, GHM39_05980, GIG92_01790, GIH49_01260, GJW51_07325, SOURCE 22 GNG71_06855, GON91_01810, GT011_02015, GXB45_00580, GYN46_14485, SOURCE 23 GYO86_08555, GYP27_02015, GYS19_13395, GYU05_01010, GYU24_02035, SOURCE 24 GYX95_04495, GYY14_11060, GYZ23_12950, GYZ33_11570, GYZ61_07200, SOURCE 25 GZI09_15320, GZK40_07615, GZM52_07550, GZN68_09475, HP506_001182, SOURCE 26 HQN34_002361, I6I37_04555, I8J47_00192, IP987_001477, JKV73_01561, SOURCE 27 JKV74_07850, JKV76_01310, JKV77_01646, JKX60_08595, JKX61_06825, SOURCE 28 KV70_04590, KW30_04605, LMNIHS28_00654, M643_00970, QD52_08715, SOURCE 29 R019_12835, UI29_08755, UP23_04390; SOURCE 30 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 31 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 32 MOL_ID: 2; SOURCE 33 SYNTHETIC: YES; SOURCE 34 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 35 ORGANISM_TAXID: 32630 KEYWDS GLNR, LISTERIA, GLUTAMINE SYNTHETASE, REPRESSOR, TRANSCRIPTION, KEYWDS 2 GLNRA, DNA BINDING PROTEIN, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.A.SCHUMACHER,R.G.BRENNAN REVDAT 3 18-OCT-23 7TEC 1 REMARK REVDAT 2 10-AUG-22 7TEC 1 JRNL REVDAT 1 29-JUN-22 7TEC 0 JRNL AUTH B.A.TRAVIS,J.V.PECK,R.SALINAS,B.DOPKINS,N.LENT,V.D.NGUYEN, JRNL AUTH 2 M.J.BORGNIA,R.G.BRENNAN,M.A.SCHUMACHER JRNL TITL MOLECULAR DISSECTION OF THE GLUTAMINE SYNTHETASE-GLNR JRNL TITL 2 NITROGEN REGULATORY CIRCUITRY IN GRAM-POSITIVE BACTERIA. JRNL REF NAT COMMUN V. 13 3793 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 35778410 JRNL DOI 10.1038/S41467-022-31573-0 REMARK 2 REMARK 2 RESOLUTION. 3.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 2384 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.270 REMARK 3 R VALUE (WORKING SET) : 0.266 REMARK 3 FREE R VALUE : 0.309 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.980 REMARK 3 FREE R VALUE TEST SET COUNT : 238 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.5100 - 4.3500 0.97 1110 124 0.2735 0.3047 REMARK 3 2 4.3400 - 3.4500 0.97 1036 114 0.2521 0.3174 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 2.0380 5.3700 23.3464 REMARK 3 T TENSOR REMARK 3 T11: 0.7511 T22: 0.4795 REMARK 3 T33: 0.2185 T12: -0.1205 REMARK 3 T13: -0.0752 T23: -0.0169 REMARK 3 L TENSOR REMARK 3 L11: 1.9070 L22: 2.0865 REMARK 3 L33: 4.3892 L12: -1.5792 REMARK 3 L13: -0.1568 L23: 0.2662 REMARK 3 S TENSOR REMARK 3 S11: 0.2381 S12: 0.2669 S13: -0.0324 REMARK 3 S21: -0.4476 S22: 0.0002 S23: -0.2037 REMARK 3 S31: -0.0605 S32: 0.5488 S33: -0.1829 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7TEC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1000262152. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.09 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 2384 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.450 REMARK 200 RESOLUTION RANGE LOW (A) : 37.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06400 REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.34 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.42000 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7TEA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM SODIUM CACODYLATE PH 6.5, 35% REMARK 280 MPD, 10 MM MGCL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 275K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.70500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.70500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 60.70500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 SER A 1 REMARK 465 LYS A 74 REMARK 465 LYS A 75 REMARK 465 MET A 76 REMARK 465 TYR A 77 REMARK 465 GLN A 78 REMARK 465 MET A 79 REMARK 465 GLN A 80 REMARK 465 GLN A 81 REMARK 465 LYS A 82 REMARK 465 GLU A 83 REMARK 465 SER A 84 REMARK 465 LYS A 85 REMARK 465 GLU A 86 REMARK 465 PRO A 87 REMARK 465 LEU A 88 REMARK 465 THR A 89 REMARK 465 ASP A 90 REMARK 465 ASP A 91 REMARK 465 ASP A 92 REMARK 465 VAL A 93 REMARK 465 ARG A 94 REMARK 465 LYS A 95 REMARK 465 ILE A 96 REMARK 465 LEU A 97 REMARK 465 ARG A 98 REMARK 465 LYS A 99 REMARK 465 GLU A 100 REMARK 465 MET A 101 REMARK 465 GLN A 102 REMARK 465 GLN A 103 REMARK 465 ALA A 104 REMARK 465 GLY A 105 REMARK 465 ARG A 106 REMARK 465 PHE A 107 REMARK 465 VAL A 108 REMARK 465 LYS A 109 REMARK 465 GLN A 110 REMARK 465 ASP A 111 REMARK 465 ALA A 112 REMARK 465 THR A 113 REMARK 465 GLY A 114 REMARK 465 LYS A 115 REMARK 465 GLN A 116 REMARK 465 GLN A 117 REMARK 465 LEU A 118 REMARK 465 PRO A 119 REMARK 465 ARG A 120 REMARK 465 PHE A 121 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 2 CG CD OE1 OE2 REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 GLU A 4 CG CD OE1 OE2 REMARK 470 ARG A 6 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 7 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 38 CG ND1 CD2 CE1 NE2 REMARK 470 TYR A 63 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE A 70 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 47 OP2 DT H 14 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 N2 DG H 1 O6 DG H 20 2555 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU A 11 C PHE A 12 N 0.217 REMARK 500 DG H 1 O3' DG H 1 C3' -0.058 REMARK 500 DA H 10 O3' DA H 10 C3' -0.046 REMARK 500 DA H 10 N9 DA H 10 C4 -0.049 REMARK 500 DA H 11 O3' DA H 11 C3' -0.039 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC H 0 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG H 7 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 8 -3.07 -58.07 REMARK 500 LEU A 64 -21.37 -145.42 REMARK 500 LEU A 68 152.04 178.84 REMARK 500 ASN A 69 -166.17 -78.61 REMARK 500 REMARK 500 REMARK: NULL DBREF 7TEC A 0 121 UNP L8DSZ4 L8DSZ4_LISMN 1 122 DBREF 7TEC H 0 20 PDB 7TEC 7TEC 0 20 SEQADV 7TEC GLY A -3 UNP L8DSZ4 EXPRESSION TAG SEQADV 7TEC SER A -2 UNP L8DSZ4 EXPRESSION TAG SEQADV 7TEC HIS A -1 UNP L8DSZ4 EXPRESSION TAG SEQRES 1 A 125 GLY SER HIS MET SER GLU LYS GLU ILE ARG ARG SER MET SEQRES 2 A 125 PRO LEU PHE PRO ILE GLY PRO VAL MET LYS LEU THR ASP SEQRES 3 A 125 LEU THR ALA ARG GLN ILE ARG TYR TYR GLU ASP GLN GLY SEQRES 4 A 125 LEU ILE HIS PRO ALA ARG ASN GLN GLY ASN HIS ARG LEU SEQRES 5 A 125 TYR SER LEU GLN ASP ILE ASP VAL LEU LEU GLU ILE LYS SEQRES 6 A 125 ASP TYR LEU ASN ASP GLY LEU ASN ILE ALA GLY ILE LYS SEQRES 7 A 125 LYS MET TYR GLN MET GLN GLN LYS GLU SER LYS GLU PRO SEQRES 8 A 125 LEU THR ASP ASP ASP VAL ARG LYS ILE LEU ARG LYS GLU SEQRES 9 A 125 MET GLN GLN ALA GLY ARG PHE VAL LYS GLN ASP ALA THR SEQRES 10 A 125 GLY LYS GLN GLN LEU PRO ARG PHE SEQRES 1 H 21 DC DG DT DG DT DC DA DG DA DT DA DA DT SEQRES 2 H 21 DC DT DG DA DC DA DC DG HELIX 1 AA1 PRO A 13 THR A 21 1 9 HELIX 2 AA2 THR A 24 TYR A 31 1 8 HELIX 3 AA3 SER A 50 ASP A 66 1 17 SHEET 1 AA1 2 ALA A 40 ARG A 41 0 SHEET 2 AA1 2 ARG A 47 LEU A 48 -1 O LEU A 48 N ALA A 40 CRYST1 28.632 47.717 121.410 90.00 90.00 90.00 P 2 2 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.034926 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020957 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008237 0.00000