HEADER METAL BINDING PROTEIN 05-JAN-22 7TEP TITLE CRYSTAL STRUCTURE OF A CU-BOUND CYTOCHROME CB562 VARIANT IN THE TITLE 2 PRESENCE OF REDUCTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: SOLUBLE CYTOCHROME B562; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: CYTOCHROME B-562; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: CYBC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METALLOPROTEIN, ASSEMBLY, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.KAKKIS,E.GOLUB REVDAT 4 25-DEC-24 7TEP 1 REMARK LINK REVDAT 3 25-OCT-23 7TEP 1 REMARK REVDAT 2 11-JAN-23 7TEP 1 JRNL REVDAT 1 29-JUN-22 7TEP 0 JRNL AUTH A.KAKKIS,E.GOLUB,T.S.CHOI,F.A.TEZCAN JRNL TITL REDOX- AND METAL-DIRECTED STRUCTURAL DIVERSIFICATION IN JRNL TITL 2 DESIGNED METALLOPROTEIN ASSEMBLIES. JRNL REF CHEM.COMMUN.(CAMB.) V. 58 6958 2022 JRNL REFN ESSN 1364-548X JRNL PMID 35642584 JRNL DOI 10.1039/D2CC02440C REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.4 REMARK 3 NUMBER OF REFLECTIONS : 17435 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.262 REMARK 3 R VALUE (WORKING SET) : 0.253 REMARK 3 FREE R VALUE : 0.339 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.910 REMARK 3 FREE R VALUE TEST SET COUNT : 1727 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.3000 - 6.1800 0.93 1366 150 0.1887 0.2405 REMARK 3 2 6.1800 - 4.9100 0.93 1372 154 0.2686 0.3485 REMARK 3 3 4.9000 - 4.2900 0.87 1249 143 0.2279 0.3064 REMARK 3 4 4.2800 - 3.9000 0.89 1319 138 0.2234 0.3062 REMARK 3 5 3.8900 - 3.6200 0.85 1238 128 0.2299 0.3380 REMARK 3 6 3.6100 - 3.4000 0.88 1312 136 0.2370 0.3311 REMARK 3 7 3.4000 - 3.2300 0.89 1290 150 0.2659 0.3735 REMARK 3 8 3.2300 - 3.0900 0.90 1349 138 0.2941 0.4435 REMARK 3 9 3.0900 - 2.9700 0.91 1301 148 0.3127 0.3775 REMARK 3 10 2.9700 - 2.8700 0.92 1331 167 0.3135 0.3977 REMARK 3 11 2.8700 - 2.7800 0.93 1351 150 0.3365 0.4574 REMARK 3 12 2.7800 - 2.7000 0.82 1230 125 0.3548 0.4240 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.530 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.668 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 3599 REMARK 3 ANGLE : 1.994 4938 REMARK 3 CHIRALITY : 0.067 504 REMARK 3 PLANARITY : 0.011 639 REMARK 3 DIHEDRAL : 22.849 1312 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7TEP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1000262154. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.115830 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9592 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 48.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.05709 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.6600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.14580 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2BC5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG1500, 0.1 M BIS-TRIS, 0.2 M REMARK 280 AMMONIUM ACETATE, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.28500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -170.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H GLU A 18 O HOH A 301 1.25 REMARK 500 O ALA C 24 H ASP C 28 1.45 REMARK 500 O ILE A 67 H GLY A 70 1.46 REMARK 500 OG SER D 55 H MET D 58 1.47 REMARK 500 O GLU D 8 H ASP D 12 1.50 REMARK 500 OE1 GLU B 81 CU CU B 202 1.51 REMARK 500 OD1 ASN B 22 H GLN B 25 1.56 REMARK 500 HZ1 LYS D 27 O HOH D 305 1.59 REMARK 500 H3 ALA B 1 OD2 ASP B 39 1.60 REMARK 500 NE2 HIS B 77 CU CU B 202 1.64 REMARK 500 SG CYS A 96 CU CU A 203 1.68 REMARK 500 O LEU A 14 O HOH A 301 1.85 REMARK 500 O LYS C 85 O HOH C 301 1.86 REMARK 500 SG CYS D 98 CBB HEC D 201 1.92 REMARK 500 O HIS B 59 O HOH B 301 1.95 REMARK 500 O ALA D 74 O HOH D 301 1.96 REMARK 500 OE2 GLU A 92 O HOH A 302 1.99 REMARK 500 N GLU A 18 O HOH A 301 2.04 REMARK 500 OG1 THR D 31 O HOH D 302 2.11 REMARK 500 OD2 ASP D 5 O HOH D 303 2.11 REMARK 500 O ASN C 80 O HOH C 302 2.14 REMARK 500 O LEU D 76 ND2 ASN D 80 2.14 REMARK 500 O GLU D 57 O HOH D 304 2.14 REMARK 500 OG1 THR A 44 O HOH A 303 2.15 REMARK 500 OD1 ASN B 22 N ALA B 24 2.15 REMARK 500 O ASN A 99 N CYS A 101 2.18 REMARK 500 O GLU D 8 N ASP D 12 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OXT ARG B 106 HZ3 LYS D 19 2555 1.41 REMARK 500 OXT ARG B 106 NZ LYS D 19 2555 1.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU A 76 CG LEU A 76 CD2 -0.246 REMARK 500 CYS A 98 CB CYS A 98 SG -0.109 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 28 CB - CG - OD1 ANGL. DEV. = 7.2 DEGREES REMARK 500 LEU A 94 CA - CB - CG ANGL. DEV. = 18.5 DEGREES REMARK 500 CYS A 96 CA - CB - SG ANGL. DEV. = 10.3 DEGREES REMARK 500 CYS B 96 CA - CB - SG ANGL. DEV. = 9.8 DEGREES REMARK 500 CYS C 96 CA - CB - SG ANGL. DEV. = 6.6 DEGREES REMARK 500 CYS D 101 CA - CB - SG ANGL. DEV. = -11.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 34 -85.08 -47.40 REMARK 500 ALA A 35 -43.39 -28.01 REMARK 500 ALA A 36 -70.55 -60.22 REMARK 500 ALA A 43 147.12 -31.97 REMARK 500 LYS A 47 -8.34 -54.78 REMARK 500 SER A 52 152.13 -45.81 REMARK 500 ILE A 67 -82.49 -75.49 REMARK 500 LEU A 68 -66.85 -7.48 REMARK 500 ALA A 89 -70.37 -34.10 REMARK 500 LEU A 94 -36.42 -33.18 REMARK 500 ASN A 99 -76.14 -45.67 REMARK 500 ALA A 100 -32.99 -28.17 REMARK 500 CYS A 101 -76.88 -70.37 REMARK 500 HIS A 102 -35.69 -22.21 REMARK 500 GLN A 103 34.90 -95.40 REMARK 500 LYS A 104 -33.40 -166.98 REMARK 500 TYR A 105 22.22 -145.06 REMARK 500 ASP B 12 -76.00 -56.99 REMARK 500 ASN B 22 -147.53 -126.68 REMARK 500 ALA B 37 -89.25 -72.23 REMARK 500 ALA B 38 -44.93 -9.43 REMARK 500 LEU B 48 31.22 -84.54 REMARK 500 PRO B 56 -37.68 -37.81 REMARK 500 TRP B 66 -77.84 -28.45 REMARK 500 LEU B 94 -37.27 -151.44 REMARK 500 LYS B 95 -3.36 -59.56 REMARK 500 ASP C 21 -5.18 -143.95 REMARK 500 ALA C 23 -88.06 -54.15 REMARK 500 TRP C 41 -51.00 -27.21 REMARK 500 TRP C 66 -72.73 -46.07 REMARK 500 ILE C 67 -73.99 -32.58 REMARK 500 HIS C 77 -76.53 -28.65 REMARK 500 GLU C 81 2.92 -67.45 REMARK 500 ALA C 89 -20.71 -37.99 REMARK 500 GLU C 92 3.71 -63.24 REMARK 500 LEU C 94 -30.69 -27.96 REMARK 500 CYS C 96 27.92 -75.32 REMARK 500 ASP D 2 -161.61 -65.18 REMARK 500 LEU D 3 -77.17 -69.99 REMARK 500 ALA D 20 174.41 -51.74 REMARK 500 LYS D 27 -78.18 -40.71 REMARK 500 THR D 44 77.54 -155.11 REMARK 500 PRO D 45 -174.07 -62.91 REMARK 500 LEU D 68 -77.01 -44.23 REMARK 500 ILE D 69 -7.96 -55.58 REMARK 500 VAL D 84 -67.63 -104.19 REMARK 500 LEU D 94 -16.14 -47.24 REMARK 500 ASN D 99 -82.45 -54.75 REMARK 500 ALA D 100 -63.44 -13.14 REMARK 500 TYR D 105 27.12 -142.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN C 93 LEU C 94 148.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 TYR A 105 -10.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 7 SD REMARK 620 2 HEC A 201 NA 78.4 REMARK 620 3 HEC A 201 NB 72.1 84.6 REMARK 620 4 HEC A 201 NC 107.5 169.0 88.4 REMARK 620 5 HEC A 201 ND 107.9 85.3 169.7 101.2 REMARK 620 6 HIS A 102 NE2 151.2 94.4 79.5 76.0 99.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 202 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 63 NE2 REMARK 620 2 HOH D 312 O 97.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 202 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 77 NE2 REMARK 620 2 GLU A 81 OE2 76.1 REMARK 620 3 HIS B 63 NE2 81.7 114.4 REMARK 620 4 HOH C 307 O 127.7 146.2 94.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 203 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 77 NE2 REMARK 620 2 GLU C 81 OE2 101.5 REMARK 620 3 HIS D 63 NE2 93.2 99.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET B 7 SD REMARK 620 2 HEC B 201 NA 105.4 REMARK 620 3 HEC B 201 NB 79.8 89.4 REMARK 620 4 HEC B 201 NC 77.5 177.1 91.2 REMARK 620 5 HEC B 201 ND 97.3 99.2 171.3 80.2 REMARK 620 6 HIS B 102 NE2 151.3 91.6 77.4 85.8 102.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU C 202 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 63 NE2 REMARK 620 2 HIS D 77 NE2 109.2 REMARK 620 3 GLU D 81 OE2 115.0 83.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC C 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 102 NE2 REMARK 620 2 HEC C 201 NA 72.8 REMARK 620 3 HEC C 201 NB 65.0 83.9 REMARK 620 4 HEC C 201 NC 97.2 168.3 97.5 REMARK 620 5 HEC C 201 ND 103.3 89.9 168.0 86.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC D 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 102 NE2 REMARK 620 2 HEC D 201 NA 88.4 REMARK 620 3 HEC D 201 NB 72.7 85.2 REMARK 620 4 HEC D 201 NC 70.3 157.5 94.9 REMARK 620 5 HEC D 201 ND 89.2 79.8 156.8 92.4 REMARK 620 N 1 2 3 4 DBREF 7TEP A 1 106 UNP P0ABE7 C562_ECOLX 23 128 DBREF 7TEP B 1 106 UNP P0ABE7 C562_ECOLX 23 128 DBREF 7TEP C 1 106 UNP P0ABE7 C562_ECOLX 23 128 DBREF 7TEP D 1 106 UNP P0ABE7 C562_ECOLX 23 128 SEQADV 7TEP ALA A 34 UNP P0ABE7 ARG 56 ENGINEERED MUTATION SEQADV 7TEP ALA A 38 UNP P0ABE7 LEU 60 ENGINEERED MUTATION SEQADV 7TEP TRP A 41 UNP P0ABE7 GLN 63 ENGINEERED MUTATION SEQADV 7TEP SER A 42 UNP P0ABE7 LYS 64 ENGINEERED MUTATION SEQADV 7TEP HIS A 59 UNP P0ABE7 LYS 81 ENGINEERED MUTATION SEQADV 7TEP TRP A 66 UNP P0ABE7 ASP 88 ENGINEERED MUTATION SEQADV 7TEP ILE A 69 UNP P0ABE7 VAL 91 ENGINEERED MUTATION SEQADV 7TEP HIS A 73 UNP P0ABE7 ASP 95 ENGINEERED MUTATION SEQADV 7TEP ALA A 74 UNP P0ABE7 ASP 96 ENGINEERED MUTATION SEQADV 7TEP HIS A 77 UNP P0ABE7 LYS 99 ENGINEERED MUTATION SEQADV 7TEP CYS A 96 UNP P0ABE7 THR 118 ENGINEERED MUTATION SEQADV 7TEP CYS A 98 UNP P0ABE7 ARG 120 ENGINEERED MUTATION SEQADV 7TEP CYS A 101 UNP P0ABE7 TYR 123 ENGINEERED MUTATION SEQADV 7TEP ALA B 34 UNP P0ABE7 ARG 56 ENGINEERED MUTATION SEQADV 7TEP ALA B 38 UNP P0ABE7 LEU 60 ENGINEERED MUTATION SEQADV 7TEP TRP B 41 UNP P0ABE7 GLN 63 ENGINEERED MUTATION SEQADV 7TEP SER B 42 UNP P0ABE7 LYS 64 ENGINEERED MUTATION SEQADV 7TEP HIS B 59 UNP P0ABE7 LYS 81 ENGINEERED MUTATION SEQADV 7TEP TRP B 66 UNP P0ABE7 ASP 88 ENGINEERED MUTATION SEQADV 7TEP ILE B 69 UNP P0ABE7 VAL 91 ENGINEERED MUTATION SEQADV 7TEP HIS B 73 UNP P0ABE7 ASP 95 ENGINEERED MUTATION SEQADV 7TEP ALA B 74 UNP P0ABE7 ASP 96 ENGINEERED MUTATION SEQADV 7TEP HIS B 77 UNP P0ABE7 LYS 99 ENGINEERED MUTATION SEQADV 7TEP CYS B 96 UNP P0ABE7 THR 118 ENGINEERED MUTATION SEQADV 7TEP CYS B 98 UNP P0ABE7 ARG 120 ENGINEERED MUTATION SEQADV 7TEP CYS B 101 UNP P0ABE7 TYR 123 ENGINEERED MUTATION SEQADV 7TEP ALA C 34 UNP P0ABE7 ARG 56 ENGINEERED MUTATION SEQADV 7TEP ALA C 38 UNP P0ABE7 LEU 60 ENGINEERED MUTATION SEQADV 7TEP TRP C 41 UNP P0ABE7 GLN 63 ENGINEERED MUTATION SEQADV 7TEP SER C 42 UNP P0ABE7 LYS 64 ENGINEERED MUTATION SEQADV 7TEP HIS C 59 UNP P0ABE7 LYS 81 ENGINEERED MUTATION SEQADV 7TEP TRP C 66 UNP P0ABE7 ASP 88 ENGINEERED MUTATION SEQADV 7TEP ILE C 69 UNP P0ABE7 VAL 91 ENGINEERED MUTATION SEQADV 7TEP HIS C 73 UNP P0ABE7 ASP 95 ENGINEERED MUTATION SEQADV 7TEP ALA C 74 UNP P0ABE7 ASP 96 ENGINEERED MUTATION SEQADV 7TEP HIS C 77 UNP P0ABE7 LYS 99 ENGINEERED MUTATION SEQADV 7TEP CYS C 96 UNP P0ABE7 THR 118 ENGINEERED MUTATION SEQADV 7TEP CYS C 98 UNP P0ABE7 ARG 120 ENGINEERED MUTATION SEQADV 7TEP CYS C 101 UNP P0ABE7 TYR 123 ENGINEERED MUTATION SEQADV 7TEP ALA D 34 UNP P0ABE7 ARG 56 ENGINEERED MUTATION SEQADV 7TEP ALA D 38 UNP P0ABE7 LEU 60 ENGINEERED MUTATION SEQADV 7TEP TRP D 41 UNP P0ABE7 GLN 63 ENGINEERED MUTATION SEQADV 7TEP SER D 42 UNP P0ABE7 LYS 64 ENGINEERED MUTATION SEQADV 7TEP HIS D 59 UNP P0ABE7 LYS 81 ENGINEERED MUTATION SEQADV 7TEP TRP D 66 UNP P0ABE7 ASP 88 ENGINEERED MUTATION SEQADV 7TEP ILE D 69 UNP P0ABE7 VAL 91 ENGINEERED MUTATION SEQADV 7TEP HIS D 73 UNP P0ABE7 ASP 95 ENGINEERED MUTATION SEQADV 7TEP ALA D 74 UNP P0ABE7 ASP 96 ENGINEERED MUTATION SEQADV 7TEP HIS D 77 UNP P0ABE7 LYS 99 ENGINEERED MUTATION SEQADV 7TEP CYS D 96 UNP P0ABE7 THR 118 ENGINEERED MUTATION SEQADV 7TEP CYS D 98 UNP P0ABE7 ARG 120 ENGINEERED MUTATION SEQADV 7TEP CYS D 101 UNP P0ABE7 TYR 123 ENGINEERED MUTATION SEQRES 1 A 106 ALA ASP LEU GLU ASP ASN MET GLU THR LEU ASN ASP ASN SEQRES 2 A 106 LEU LYS VAL ILE GLU LYS ALA ASP ASN ALA ALA GLN VAL SEQRES 3 A 106 LYS ASP ALA LEU THR LYS MET ALA ALA ALA ALA ALA ASP SEQRES 4 A 106 ALA TRP SER ALA THR PRO PRO LYS LEU GLU ASP LYS SER SEQRES 5 A 106 PRO ASP SER PRO GLU MET HIS ASP PHE ARG HIS GLY PHE SEQRES 6 A 106 TRP ILE LEU ILE GLY GLN ILE HIS ALA ALA LEU HIS LEU SEQRES 7 A 106 ALA ASN GLU GLY LYS VAL LYS GLU ALA GLN ALA ALA ALA SEQRES 8 A 106 GLU GLN LEU LYS CYS THR CYS ASN ALA CYS HIS GLN LYS SEQRES 9 A 106 TYR ARG SEQRES 1 B 106 ALA ASP LEU GLU ASP ASN MET GLU THR LEU ASN ASP ASN SEQRES 2 B 106 LEU LYS VAL ILE GLU LYS ALA ASP ASN ALA ALA GLN VAL SEQRES 3 B 106 LYS ASP ALA LEU THR LYS MET ALA ALA ALA ALA ALA ASP SEQRES 4 B 106 ALA TRP SER ALA THR PRO PRO LYS LEU GLU ASP LYS SER SEQRES 5 B 106 PRO ASP SER PRO GLU MET HIS ASP PHE ARG HIS GLY PHE SEQRES 6 B 106 TRP ILE LEU ILE GLY GLN ILE HIS ALA ALA LEU HIS LEU SEQRES 7 B 106 ALA ASN GLU GLY LYS VAL LYS GLU ALA GLN ALA ALA ALA SEQRES 8 B 106 GLU GLN LEU LYS CYS THR CYS ASN ALA CYS HIS GLN LYS SEQRES 9 B 106 TYR ARG SEQRES 1 C 106 ALA ASP LEU GLU ASP ASN MET GLU THR LEU ASN ASP ASN SEQRES 2 C 106 LEU LYS VAL ILE GLU LYS ALA ASP ASN ALA ALA GLN VAL SEQRES 3 C 106 LYS ASP ALA LEU THR LYS MET ALA ALA ALA ALA ALA ASP SEQRES 4 C 106 ALA TRP SER ALA THR PRO PRO LYS LEU GLU ASP LYS SER SEQRES 5 C 106 PRO ASP SER PRO GLU MET HIS ASP PHE ARG HIS GLY PHE SEQRES 6 C 106 TRP ILE LEU ILE GLY GLN ILE HIS ALA ALA LEU HIS LEU SEQRES 7 C 106 ALA ASN GLU GLY LYS VAL LYS GLU ALA GLN ALA ALA ALA SEQRES 8 C 106 GLU GLN LEU LYS CYS THR CYS ASN ALA CYS HIS GLN LYS SEQRES 9 C 106 TYR ARG SEQRES 1 D 106 ALA ASP LEU GLU ASP ASN MET GLU THR LEU ASN ASP ASN SEQRES 2 D 106 LEU LYS VAL ILE GLU LYS ALA ASP ASN ALA ALA GLN VAL SEQRES 3 D 106 LYS ASP ALA LEU THR LYS MET ALA ALA ALA ALA ALA ASP SEQRES 4 D 106 ALA TRP SER ALA THR PRO PRO LYS LEU GLU ASP LYS SER SEQRES 5 D 106 PRO ASP SER PRO GLU MET HIS ASP PHE ARG HIS GLY PHE SEQRES 6 D 106 TRP ILE LEU ILE GLY GLN ILE HIS ALA ALA LEU HIS LEU SEQRES 7 D 106 ALA ASN GLU GLY LYS VAL LYS GLU ALA GLN ALA ALA ALA SEQRES 8 D 106 GLU GLN LEU LYS CYS THR CYS ASN ALA CYS HIS GLN LYS SEQRES 9 D 106 TYR ARG HET HEC A 201 74 HET CU A 202 1 HET CU A 203 1 HET HEC B 201 75 HET CU B 202 1 HET HEC C 201 75 HET CU C 202 1 HET HEC D 201 74 HETNAM HEC HEME C HETNAM CU COPPER (II) ION FORMUL 5 HEC 4(C34 H34 FE N4 O4) FORMUL 6 CU 4(CU 2+) FORMUL 13 HOH *88(H2 O) HELIX 1 AA1 ASP A 2 LYS A 19 1 18 HELIX 2 AA2 ASN A 22 ALA A 40 1 19 HELIX 3 AA3 PRO A 45 GLU A 49 5 5 HELIX 4 AA4 SER A 55 ASN A 80 1 26 HELIX 5 AA5 LYS A 83 LEU A 94 1 12 HELIX 6 AA6 LEU A 94 ARG A 106 1 13 HELIX 7 AA7 ASP B 2 LYS B 19 1 18 HELIX 8 AA8 ALA B 23 SER B 42 1 20 HELIX 9 AA9 SER B 55 ASN B 80 1 26 HELIX 10 AB1 LYS B 83 GLN B 93 1 11 HELIX 11 AB2 LEU B 94 ARG B 106 1 13 HELIX 12 AB3 ASP C 2 GLU C 18 1 17 HELIX 13 AB4 ASN C 22 ALA C 43 1 22 HELIX 14 AB5 PRO C 45 GLU C 49 5 5 HELIX 15 AB6 SER C 55 GLU C 81 1 27 HELIX 16 AB7 LYS C 83 GLU C 92 1 10 HELIX 17 AB8 LEU C 94 ARG C 106 1 13 HELIX 18 AB9 ASP D 2 ALA D 20 1 19 HELIX 19 AC1 ASN D 22 TRP D 41 1 20 HELIX 20 AC2 PRO D 45 ASP D 50 1 6 HELIX 21 AC3 SER D 55 ASN D 80 1 26 HELIX 22 AC4 GLU D 86 LEU D 94 1 9 HELIX 23 AC5 LYS D 95 ARG D 106 1 12 LINK SG CYS A 98 CAB HEC A 201 1555 1555 1.79 LINK SG CYS A 101 CAC HEC A 201 1555 1555 1.78 LINK SG CYS D 98 CAB HEC D 201 1555 1555 1.78 LINK SD MET A 7 FE HEC A 201 1555 1555 2.39 LINK NE2BHIS A 63 CU CU B 202 1555 1555 1.85 LINK NE2 HIS A 77 CU CU A 202 1555 1555 1.78 LINK OE2 GLU A 81 CU CU A 202 1555 1555 2.03 LINK NE2 HIS A 102 FE HEC A 201 1555 1555 2.55 LINK CU CU A 202 NE2 HIS B 63 1555 1555 2.22 LINK CU CU A 202 O HOH C 307 1555 1555 2.28 LINK CU CU A 203 NE2 HIS C 77 1555 1555 1.75 LINK CU CU A 203 OE2 GLU C 81 1555 1555 1.98 LINK CU CU A 203 NE2 HIS D 63 1555 1555 2.55 LINK SD MET B 7 FE HEC B 201 1555 1555 2.68 LINK NE2 HIS B 102 FE HEC B 201 1555 1555 2.71 LINK CU CU B 202 O HOH D 312 1555 1555 2.20 LINK NE2 HIS C 63 CU CU C 202 1555 1555 1.72 LINK NE2 HIS C 102 FE HEC C 201 1555 1555 2.39 LINK CU CU C 202 NE2 HIS D 77 1555 1555 2.05 LINK CU CU C 202 OE2 GLU D 81 1555 1555 2.54 LINK NE2 HIS D 102 FE HEC D 201 1555 1555 2.44 CRYST1 47.080 80.570 49.440 90.00 102.33 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021240 0.000000 0.004641 0.00000 SCALE2 0.000000 0.012412 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020704 0.00000