HEADER IMMUNE SYSTEM/TOXIN 07-JAN-22 7TGF TITLE SINGLE-DOMAIN VHH INTRABODIES NEUTRALIZE RICIN TOXIN. COMPND MOL_ID: 1; COMPND 2 MOLECULE: RICIN CHAIN A; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.2.22; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: VHH CAMELID ANTIBODY; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: ANTIBODY SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RICINUS COMMUNIS; SOURCE 3 ORGANISM_COMMON: CASTOR BEAN; SOURCE 4 ORGANISM_TAXID: 3988; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: VICUGNA PACOS; SOURCE 9 ORGANISM_TAXID: 30538; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS N-GLYCOSIDASE, VHH ANTIBODY, IMMUNE SYSTEM, IMMUNE SYSTEM-TOXIN KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.J.RUDOLPH,N.MANTIS REVDAT 2 18-OCT-23 7TGF 1 REMARK REVDAT 1 12-OCT-22 7TGF 0 JRNL AUTH T.F.CZAJKA,D.J.VANCE,S.DAVIS,M.J.RUDOLPH,N.J.MANTIS JRNL TITL SINGLE-DOMAIN ANTIBODIES NEUTRALIZE RICIN TOXIN JRNL TITL 2 INTRACELLULARLY BY BLOCKING ACCESS TO RIBOSOMAL P-STALK JRNL TITL 3 PROTEINS. JRNL REF J.BIOL.CHEM. V. 298 01742 2022 JRNL REFN ESSN 1083-351X JRNL PMID 35182523 JRNL DOI 10.1016/J.JBC.2022.101742 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 76949 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.820 REMARK 3 FREE R VALUE TEST SET COUNT : 3707 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.8860 - 3.9905 1.00 3171 156 0.1675 0.1698 REMARK 3 2 3.9905 - 3.1675 1.00 2963 132 0.1335 0.1529 REMARK 3 3 3.1675 - 2.7672 1.00 2921 135 0.1448 0.1799 REMARK 3 4 2.7672 - 2.5142 1.00 2883 147 0.1483 0.1579 REMARK 3 5 2.5142 - 2.3340 1.00 2854 139 0.1431 0.1657 REMARK 3 6 2.3340 - 2.1964 1.00 2830 166 0.1370 0.1600 REMARK 3 7 2.1964 - 2.0864 1.00 2815 167 0.1387 0.1876 REMARK 3 8 2.0864 - 1.9955 1.00 2797 145 0.1396 0.1563 REMARK 3 9 1.9955 - 1.9187 1.00 2833 143 0.1490 0.1617 REMARK 3 10 1.9187 - 1.8525 1.00 2793 149 0.1583 0.2000 REMARK 3 11 1.8525 - 1.7946 1.00 2800 141 0.1673 0.1988 REMARK 3 12 1.7946 - 1.7433 1.00 2784 151 0.1655 0.1953 REMARK 3 13 1.7433 - 1.6974 1.00 2771 146 0.1703 0.2130 REMARK 3 14 1.6974 - 1.6560 1.00 2817 138 0.1747 0.2067 REMARK 3 15 1.6560 - 1.6183 1.00 2804 145 0.1798 0.2161 REMARK 3 16 1.6183 - 1.5839 1.00 2767 118 0.1799 0.2205 REMARK 3 17 1.5839 - 1.5522 1.00 2779 148 0.1806 0.2017 REMARK 3 18 1.5522 - 1.5229 1.00 2778 141 0.1984 0.2257 REMARK 3 19 1.5229 - 1.4957 1.00 2735 140 0.1941 0.2193 REMARK 3 20 1.4957 - 1.4704 1.00 2795 154 0.2050 0.2317 REMARK 3 21 1.4704 - 1.4466 1.00 2743 148 0.2188 0.2207 REMARK 3 22 1.4466 - 1.4244 1.00 2784 140 0.2333 0.2610 REMARK 3 23 1.4244 - 1.4034 1.00 2752 120 0.2308 0.2462 REMARK 3 24 1.4034 - 1.3837 1.00 2746 161 0.2433 0.2824 REMARK 3 25 1.3837 - 1.3650 1.00 2797 125 0.2683 0.3374 REMARK 3 26 1.3650 - 1.3472 0.98 2730 112 0.2933 0.3543 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.43 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3187 REMARK 3 ANGLE : 1.102 4352 REMARK 3 CHIRALITY : 0.088 480 REMARK 3 PLANARITY : 0.007 579 REMARK 3 DIHEDRAL : 14.502 1183 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.5183 8.3176 30.6409 REMARK 3 T TENSOR REMARK 3 T11: 0.1515 T22: 0.1507 REMARK 3 T33: 0.1724 T12: -0.0103 REMARK 3 T13: 0.0080 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 3.0541 L22: 1.7290 REMARK 3 L33: 4.3855 L12: 1.8103 REMARK 3 L13: -3.0099 L23: -0.9273 REMARK 3 S TENSOR REMARK 3 S11: 0.1242 S12: -0.6893 S13: -0.0438 REMARK 3 S21: 0.0823 S22: -0.1267 S23: -0.1767 REMARK 3 S31: -0.0806 S32: 0.5033 S33: 0.1442 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 18 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.4783 17.1255 18.6737 REMARK 3 T TENSOR REMARK 3 T11: 0.1651 T22: 0.1203 REMARK 3 T33: 0.1696 T12: -0.0164 REMARK 3 T13: 0.0079 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 2.1112 L22: 0.5778 REMARK 3 L33: 2.0150 L12: 0.3414 REMARK 3 L13: -0.9356 L23: -0.5685 REMARK 3 S TENSOR REMARK 3 S11: 0.1203 S12: -0.0540 S13: 0.1914 REMARK 3 S21: 0.0099 S22: -0.0788 S23: -0.0646 REMARK 3 S31: -0.2654 S32: 0.1516 S33: -0.0362 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 57 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9130 -2.3534 21.3464 REMARK 3 T TENSOR REMARK 3 T11: 0.1144 T22: 0.1088 REMARK 3 T33: 0.1189 T12: 0.0116 REMARK 3 T13: 0.0035 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 1.3914 L22: 1.7848 REMARK 3 L33: 1.7229 L12: -0.2794 REMARK 3 L13: 0.1742 L23: -0.3045 REMARK 3 S TENSOR REMARK 3 S11: 0.0091 S12: 0.0092 S13: -0.0986 REMARK 3 S21: -0.0768 S22: -0.0769 S23: -0.0458 REMARK 3 S31: 0.1367 S32: 0.1350 S33: 0.0822 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 161 THROUGH 263 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7245 10.7724 11.3759 REMARK 3 T TENSOR REMARK 3 T11: 0.1202 T22: 0.1906 REMARK 3 T33: 0.1295 T12: 0.0227 REMARK 3 T13: -0.0047 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 1.3966 L22: 0.8659 REMARK 3 L33: 1.6382 L12: -0.0045 REMARK 3 L13: -0.5884 L23: -0.0966 REMARK 3 S TENSOR REMARK 3 S11: 0.0912 S12: 0.2226 S13: 0.0859 REMARK 3 S21: -0.0835 S22: -0.0260 S23: 0.0893 REMARK 3 S31: -0.1270 S32: -0.2757 S33: -0.0878 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.6209 33.5228 19.0356 REMARK 3 T TENSOR REMARK 3 T11: 0.1923 T22: 0.2262 REMARK 3 T33: 0.2408 T12: 0.0750 REMARK 3 T13: 0.0181 T23: -0.0401 REMARK 3 L TENSOR REMARK 3 L11: 2.1111 L22: 7.9174 REMARK 3 L33: 9.2875 L12: -0.4399 REMARK 3 L13: 0.6421 L23: -6.6346 REMARK 3 S TENSOR REMARK 3 S11: 0.2096 S12: 0.0199 S13: 0.1168 REMARK 3 S21: 0.1138 S22: 0.0361 S23: 0.5214 REMARK 3 S31: -0.3419 S32: -0.3388 S33: -0.2678 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 26 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.5873 22.7144 22.1294 REMARK 3 T TENSOR REMARK 3 T11: 0.1436 T22: 0.1483 REMARK 3 T33: 0.1698 T12: 0.0125 REMARK 3 T13: 0.0003 T23: -0.0173 REMARK 3 L TENSOR REMARK 3 L11: 2.2001 L22: 4.5269 REMARK 3 L33: 6.1104 L12: -0.4984 REMARK 3 L13: -1.1833 L23: -2.1473 REMARK 3 S TENSOR REMARK 3 S11: 0.1813 S12: -0.1507 S13: -0.0715 REMARK 3 S21: 0.3190 S22: -0.0197 S23: 0.2891 REMARK 3 S31: 0.1200 S32: 0.1784 S33: -0.2253 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 40 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.5689 24.4754 9.2255 REMARK 3 T TENSOR REMARK 3 T11: 0.2979 T22: 0.3303 REMARK 3 T33: 0.2632 T12: 0.0869 REMARK 3 T13: -0.1052 T23: -0.0432 REMARK 3 L TENSOR REMARK 3 L11: 7.9209 L22: 1.3403 REMARK 3 L33: 4.0990 L12: 0.6097 REMARK 3 L13: 5.3290 L23: -0.4048 REMARK 3 S TENSOR REMARK 3 S11: 0.1980 S12: 0.7864 S13: -0.4096 REMARK 3 S21: -0.6440 S22: -0.0476 S23: 0.4478 REMARK 3 S31: 0.2115 S32: 0.2301 S33: -0.1512 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 52 THROUGH 67 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.1668 29.1036 15.1842 REMARK 3 T TENSOR REMARK 3 T11: 0.1319 T22: 0.3259 REMARK 3 T33: 0.2318 T12: 0.0012 REMARK 3 T13: 0.0258 T23: 0.0399 REMARK 3 L TENSOR REMARK 3 L11: 2.6710 L22: 7.7716 REMARK 3 L33: 7.0340 L12: -1.0927 REMARK 3 L13: -0.4793 L23: -3.7702 REMARK 3 S TENSOR REMARK 3 S11: 0.1499 S12: 0.4892 S13: 0.4060 REMARK 3 S21: -0.1397 S22: -0.3784 S23: -0.6477 REMARK 3 S31: -0.1281 S32: 0.8377 S33: 0.3334 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 68 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.9434 32.1106 23.8099 REMARK 3 T TENSOR REMARK 3 T11: 0.1304 T22: 0.2660 REMARK 3 T33: 0.1958 T12: 0.0188 REMARK 3 T13: 0.0116 T23: -0.0258 REMARK 3 L TENSOR REMARK 3 L11: 4.8137 L22: 4.0092 REMARK 3 L33: 1.0690 L12: 0.0041 REMARK 3 L13: 0.1791 L23: -0.1038 REMARK 3 S TENSOR REMARK 3 S11: -0.0303 S12: -0.5759 S13: 0.3510 REMARK 3 S21: 0.0920 S22: -0.0307 S23: 0.1116 REMARK 3 S31: -0.2430 S32: 0.1103 S33: -0.0413 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 84 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.9408 30.1756 11.8521 REMARK 3 T TENSOR REMARK 3 T11: 0.1678 T22: 0.2274 REMARK 3 T33: 0.1675 T12: 0.0651 REMARK 3 T13: 0.0126 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 2.5875 L22: 7.7136 REMARK 3 L33: 4.2646 L12: -0.9476 REMARK 3 L13: 1.5409 L23: -4.0780 REMARK 3 S TENSOR REMARK 3 S11: 0.2966 S12: 0.1923 S13: 0.0412 REMARK 3 S21: -0.6486 S22: -0.2186 S23: 0.2411 REMARK 3 S31: 0.1539 S32: 0.2345 S33: -0.0883 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 100 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.1626 16.7716 15.5131 REMARK 3 T TENSOR REMARK 3 T11: 0.1822 T22: 0.2978 REMARK 3 T33: 0.2147 T12: 0.0733 REMARK 3 T13: 0.0340 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 1.4277 L22: 2.8618 REMARK 3 L33: 8.0064 L12: 0.8524 REMARK 3 L13: 1.4428 L23: 0.6977 REMARK 3 S TENSOR REMARK 3 S11: -0.0180 S12: 0.1454 S13: -0.0771 REMARK 3 S21: 0.1349 S22: 0.1103 S23: 0.2486 REMARK 3 S31: -0.0376 S32: -0.3607 S33: -0.0311 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 110 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.6164 22.8604 16.7206 REMARK 3 T TENSOR REMARK 3 T11: 0.1596 T22: 0.2818 REMARK 3 T33: 0.2642 T12: 0.0379 REMARK 3 T13: -0.0142 T23: -0.0169 REMARK 3 L TENSOR REMARK 3 L11: 1.9097 L22: 6.1770 REMARK 3 L33: 2.6943 L12: -1.7483 REMARK 3 L13: 0.1057 L23: -2.3969 REMARK 3 S TENSOR REMARK 3 S11: 0.0707 S12: -0.0308 S13: -0.1411 REMARK 3 S21: 0.0311 S22: 0.0435 S23: 0.5107 REMARK 3 S31: -0.0756 S32: -0.2229 S33: -0.1262 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 124 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.2332 40.4823 6.5369 REMARK 3 T TENSOR REMARK 3 T11: 0.5251 T22: 0.4842 REMARK 3 T33: 0.3844 T12: 0.1170 REMARK 3 T13: 0.0241 T23: 0.0643 REMARK 3 L TENSOR REMARK 3 L11: 5.6623 L22: 0.2849 REMARK 3 L33: 6.0137 L12: -1.0554 REMARK 3 L13: -5.8352 L23: 1.0854 REMARK 3 S TENSOR REMARK 3 S11: -0.4947 S12: 1.3407 S13: -0.1617 REMARK 3 S21: -1.1768 S22: 0.0420 S23: 0.3194 REMARK 3 S31: 0.4505 S32: -0.9360 S33: 0.1451 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7TGF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1000262241. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77109 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.347 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.70 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.70 REMARK 200 R MERGE FOR SHELL (I) : 2.08400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1RTC, 6CWG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CITRATE PH 4.0, 30% PEG REMARK 280 6000, AND 1 M LITHIUM CHLORIDE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 130.00450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 25.41500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 25.41500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.00225 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 25.41500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 25.41500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 195.00675 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 25.41500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 25.41500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 65.00225 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 25.41500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 25.41500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 195.00675 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 130.00450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 403 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 1 REMARK 465 PHE A 2 REMARK 465 PRO A 3 REMARK 465 LYS A 4 REMARK 465 SER A 264 REMARK 465 SER A 265 REMARK 465 GLN A 266 REMARK 465 PHE A 267 REMARK 465 GLN B 1 REMARK 465 LYS B 131 REMARK 465 PRO B 132 REMARK 465 GLN B 133 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H GLN A 223 O HOH A 402 1.26 REMARK 500 HH21 ARG A 197 O HOH A 409 1.51 REMARK 500 HE ARG A 235 O HOH A 410 1.53 REMARK 500 O HOH A 442 O HOH A 567 1.53 REMARK 500 HH TYR A 194 O HOH A 411 1.59 REMARK 500 O HOH B 302 O HOH B 363 1.73 REMARK 500 O ASN A 222 O HOH A 401 1.86 REMARK 500 O HOH A 423 O HOH A 534 1.86 REMARK 500 O HOH B 383 O HOH B 399 1.87 REMARK 500 O HOH A 519 O HOH A 607 1.88 REMARK 500 O HOH A 462 O HOH A 535 1.89 REMARK 500 O HOH A 525 O HOH A 614 1.90 REMARK 500 NE2 GLN B 13 O HOH B 301 1.93 REMARK 500 O HOH A 447 O HOH A 502 1.94 REMARK 500 OE2 GLU B 100 O HOH B 302 1.95 REMARK 500 N GLN A 223 O HOH A 402 1.96 REMARK 500 O HOH A 424 O HOH A 582 1.96 REMARK 500 O HOH A 488 O HOH A 537 1.96 REMARK 500 O HOH A 568 O HOH A 619 1.98 REMARK 500 ND2 ASN B 74 O HOH B 303 1.98 REMARK 500 OE1 GLU A 99 O HOH A 403 1.99 REMARK 500 OD1 ASN A 141 O1 EDO A 301 2.00 REMARK 500 O HOH B 344 O HOH B 360 2.03 REMARK 500 O HOH A 429 O HOH A 548 2.04 REMARK 500 O HOH A 621 O HOH A 633 2.05 REMARK 500 O HOH B 382 O HOH B 385 2.06 REMARK 500 O HOH A 420 O HOH A 452 2.07 REMARK 500 O HOH A 513 O HOH A 602 2.09 REMARK 500 O HOH A 594 O HOH A 617 2.10 REMARK 500 O HOH A 568 O HOH A 632 2.13 REMARK 500 O HOH B 320 O HOH B 395 2.13 REMARK 500 OE1 GLU A 177 O HOH A 404 2.13 REMARK 500 O HOH A 600 O HOH A 608 2.14 REMARK 500 O HOH A 575 O HOH A 598 2.16 REMARK 500 O HOH B 341 O HOH B 381 2.16 REMARK 500 OD1 ASN B 74 O HOH B 304 2.16 REMARK 500 O HOH A 479 O HOH A 586 2.16 REMARK 500 ND2 ASN A 97 O HOH A 405 2.17 REMARK 500 O HOH A 417 O HOH A 515 2.17 REMARK 500 O HOH B 346 O HOH B 396 2.17 REMARK 500 O HOH A 435 O HOH A 549 2.18 REMARK 500 O HOH A 401 O HOH A 443 2.18 REMARK 500 OE1 GLN A 182 OE1 GLU A 185 2.19 REMARK 500 O HOH A 558 O HOH A 569 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 550 O HOH A 634 5555 1.83 REMARK 500 O HOH A 605 O HOH B 353 5545 2.06 REMARK 500 O HOH A 544 O HOH B 389 5445 2.13 REMARK 500 O HOH A 424 O HOH B 389 5445 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 196 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 196 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 MET A 255 CG - SD - CE ANGL. DEV. = 10.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 222 -77.92 -109.81 REMARK 500 GLN A 223 51.48 -103.97 REMARK 500 ALA B 92 167.12 179.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 406 DISTANCE = 6.13 ANGSTROMS DBREF 7TGF A 1 267 UNP P02879 RICI_RICCO 36 302 DBREF 7TGF B 1 133 PDB 7TGF 7TGF 1 133 SEQRES 1 A 267 ILE PHE PRO LYS GLN TYR PRO ILE ILE ASN PHE THR THR SEQRES 2 A 267 ALA GLY ALA THR VAL GLN SER TYR THR ASN PHE ILE ARG SEQRES 3 A 267 ALA VAL ARG GLY ARG LEU THR THR GLY ALA ASP VAL ARG SEQRES 4 A 267 HIS GLU ILE PRO VAL LEU PRO ASN ARG VAL GLY LEU PRO SEQRES 5 A 267 ILE ASN GLN ARG PHE ILE LEU VAL GLU LEU SER ASN HIS SEQRES 6 A 267 ALA GLU LEU SER VAL THR LEU ALA LEU ASP VAL THR ASN SEQRES 7 A 267 ALA TYR VAL VAL GLY TYR ARG ALA GLY ASN SER ALA TYR SEQRES 8 A 267 PHE PHE HIS PRO ASP ASN GLN GLU ASP ALA GLU ALA ILE SEQRES 9 A 267 THR HIS LEU PHE THR ASP VAL GLN ASN ARG TYR THR PHE SEQRES 10 A 267 ALA PHE GLY GLY ASN TYR ASP ARG LEU GLU GLN LEU ALA SEQRES 11 A 267 GLY ASN LEU ARG GLU ASN ILE GLU LEU GLY ASN GLY PRO SEQRES 12 A 267 LEU GLU GLU ALA ILE SER ALA LEU TYR TYR TYR SER THR SEQRES 13 A 267 GLY GLY THR GLN LEU PRO THR LEU ALA ARG SER PHE ILE SEQRES 14 A 267 ILE CYS ILE GLN MET ILE SER GLU ALA ALA ARG PHE GLN SEQRES 15 A 267 TYR ILE GLU GLY GLU MET ARG THR ARG ILE ARG TYR ASN SEQRES 16 A 267 ARG ARG SER ALA PRO ASP PRO SER VAL ILE THR LEU GLU SEQRES 17 A 267 ASN SER TRP GLY ARG LEU SER THR ALA ILE GLN GLU SER SEQRES 18 A 267 ASN GLN GLY ALA PHE ALA SER PRO ILE GLN LEU GLN ARG SEQRES 19 A 267 ARG ASN GLY SER LYS PHE SER VAL TYR ASP VAL SER ILE SEQRES 20 A 267 LEU ILE PRO ILE ILE ALA LEU MET VAL TYR ARG CYS ALA SEQRES 21 A 267 PRO PRO PRO SER SER GLN PHE SEQRES 1 B 133 GLN VAL GLN LEU ALA GLU THR GLY GLY GLY LEU VAL GLN SEQRES 2 B 133 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 B 133 PHE THR LEU ASP ASP TYR ALA ILE GLY TRP PHE ARG GLN SEQRES 4 B 133 ALA PRO GLY LYS GLU ARG GLU GLY VAL SER CYS ILE SER SEQRES 5 B 133 SER SER ASP GLY ARG THR TYR TYR ALA ASP SER VAL LYS SEQRES 6 B 133 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 B 133 VAL TYR LEU GLN MET ASN SER LEU LYS SER GLU ASP THR SEQRES 8 B 133 ALA VAL TYR TYR CYS ALA THR GLU GLU VAL CYS THR LEU SEQRES 9 B 133 GLY ILE PHE GLY HIS GLY PRO ASP ASP TYR TRP GLY GLN SEQRES 10 B 133 GLY THR GLN VAL THR VAL SER SER GLU PRO LYS THR PRO SEQRES 11 B 133 LYS PRO GLN HET EDO A 301 10 HET CL A 302 1 HET CL A 303 1 HET CL A 304 1 HET CL A 305 1 HET CL A 306 1 HET CL A 307 1 HET CL A 308 1 HET EDO B 201 10 HET CL B 202 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 2(C2 H6 O2) FORMUL 4 CL 8(CL 1-) FORMUL 13 HOH *362(H2 O) HELIX 1 AA1 THR A 17 THR A 33 1 17 HELIX 2 AA2 PRO A 52 GLN A 55 5 4 HELIX 3 AA3 ASN A 97 THR A 105 1 9 HELIX 4 AA4 ASN A 122 GLY A 131 1 10 HELIX 5 AA5 LEU A 133 ILE A 137 5 5 HELIX 6 AA6 GLY A 140 SER A 155 1 16 HELIX 7 AA7 GLN A 160 ILE A 175 1 16 HELIX 8 AA8 ILE A 175 PHE A 181 1 7 HELIX 9 AA9 PHE A 181 TYR A 194 1 14 HELIX 10 AB1 ASP A 201 GLU A 220 1 20 HELIX 11 AB2 SER A 246 ILE A 249 5 4 HELIX 12 AB3 THR B 28 TYR B 32 5 5 HELIX 13 AB4 ASP B 62 LYS B 65 5 4 HELIX 14 AB5 ASN B 74 LYS B 76 5 3 HELIX 15 AB6 LYS B 87 THR B 91 5 5 SHEET 1 AA1 6 ILE A 8 THR A 12 0 SHEET 2 AA1 6 PHE A 57 SER A 63 1 O GLU A 61 N ILE A 9 SHEET 3 AA1 6 SER A 69 ASP A 75 -1 O VAL A 70 N LEU A 62 SHEET 4 AA1 6 VAL A 81 ALA A 86 -1 O VAL A 82 N ALA A 73 SHEET 5 AA1 6 SER A 89 PHE A 92 -1 O TYR A 91 N TYR A 84 SHEET 6 AA1 6 ASN A 113 THR A 116 1 O ASN A 113 N ALA A 90 SHEET 1 AA2 2 VAL A 38 ARG A 39 0 SHEET 2 AA2 2 ILE A 42 PRO A 43 -1 O ILE A 42 N ARG A 39 SHEET 1 AA3 2 ALA A 225 GLN A 233 0 SHEET 2 AA3 2 LYS A 239 ASP A 244 -1 O TYR A 243 N PHE A 226 SHEET 1 AA4 4 GLN B 3 THR B 7 0 SHEET 2 AA4 4 LEU B 18 SER B 25 -1 O ALA B 23 N ALA B 5 SHEET 3 AA4 4 THR B 78 MET B 83 -1 O MET B 83 N LEU B 18 SHEET 4 AA4 4 PHE B 68 ASP B 73 -1 N THR B 69 O GLN B 82 SHEET 1 AA5 6 GLY B 10 VAL B 12 0 SHEET 2 AA5 6 THR B 119 VAL B 123 1 O THR B 122 N VAL B 12 SHEET 3 AA5 6 ALA B 92 GLU B 99 -1 N TYR B 94 O THR B 119 SHEET 4 AA5 6 ALA B 33 GLN B 39 -1 N PHE B 37 O TYR B 95 SHEET 5 AA5 6 GLU B 46 ILE B 51 -1 O SER B 49 N TRP B 36 SHEET 6 AA5 6 THR B 58 TYR B 60 -1 O TYR B 59 N CYS B 50 SSBOND 1 CYS B 22 CYS B 96 1555 1555 2.09 SSBOND 2 CYS B 50 CYS B 102 1555 1555 2.06 CRYST1 50.830 50.830 260.009 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019673 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019673 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003846 0.00000