HEADER PROTEIN FIBRIL 07-JAN-22 7TGG TITLE CRYO-EM STRUCTURE OF PILA-N AND PILA-C FROM GEOBACTER SULFURREDUCENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GEOPILIN DOMAIN 1 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: GEOPILIN DOMAIN 2 PROTEIN; COMPND 6 CHAIN: a SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACTER SULFURREDUCENS; SOURCE 3 ORGANISM_TAXID: 35554; SOURCE 4 STRAIN: ATCC 51573 / DSM 12127 / PCA; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: GEOBACTER SULFURREDUCENS; SOURCE 7 ORGANISM_TAXID: 35554; SOURCE 8 STRAIN: ATCC 51573 / DSM 12127 / PCA KEYWDS HELICAL SYMMETRY, FILAMENT, PILI, TYPE IV PILI, PSEUDO PILI, PROTEIN KEYWDS 2 FIBRIL EXPDTA ELECTRON MICROSCOPY AUTHOR F.WANG,K.MUSTAFA,C.H.CHAN,K.JOSHI,D.R.BOND,A.I.HOCHBAUM,E.H.EGELMAN REVDAT 2 31-MAY-23 7TGG 1 JRNL REVDAT 1 23-FEB-22 7TGG 0 JRNL AUTH F.WANG,K.MUSTAFA,V.SUCIU,K.JOSHI,C.H.CHAN,S.CHOI,Z.SU,D.SI, JRNL AUTH 2 A.I.HOCHBAUM,E.H.EGELMAN,D.R.BOND JRNL TITL CRYO-EM STRUCTURE OF AN EXTRACELLULAR GEOBACTER OMCE JRNL TITL 2 CYTOCHROME FILAMENT REVEALS TETRAHAEM PACKING. JRNL REF NAT MICROBIOL V. 7 1291 2022 JRNL REFN ESSN 2058-5276 JRNL PMID 35798889 JRNL DOI 10.1038/S41564-022-01159-Z REMARK 2 REMARK 2 RESOLUTION. 4.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 4.100 REMARK 3 NUMBER OF PARTICLES : 112011 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7TGG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1000262243. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : HELICAL REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : FILAMENT REMARK 245 PARTICLE TYPE : HELICAL REMARK 245 NAME OF SAMPLE : FILAMENT OF PILA-N AND PILA-C REMARK 245 PROTEINS REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 6.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 30-MERIC REMARK 350 SOFTWARE USED: UCSF CHIMERA 1.14_B42059. REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, a REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.995562 0.094108 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.094108 -0.995562 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -62.20800 REMARK 350 BIOMT1 3 0.078459 0.996917 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.996917 0.078459 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 -51.84000 REMARK 350 BIOMT1 4 0.998027 -0.062791 0.000000 0.00000 REMARK 350 BIOMT2 4 0.062791 0.998027 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 -41.47200 REMARK 350 BIOMT1 5 -0.047106 -0.998890 0.000000 0.00000 REMARK 350 BIOMT2 5 0.998890 -0.047106 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 -31.10400 REMARK 350 BIOMT1 6 -0.999507 0.031411 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.031411 -0.999507 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 -20.73600 REMARK 350 BIOMT1 7 0.015707 0.999877 0.000000 0.00000 REMARK 350 BIOMT2 7 -0.999877 0.015707 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 1.000000 -10.36800 REMARK 350 BIOMT1 8 0.015707 -0.999877 0.000000 0.00000 REMARK 350 BIOMT2 8 0.999877 0.015707 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 1.000000 10.36800 REMARK 350 BIOMT1 9 -0.999507 -0.031411 0.000000 0.00000 REMARK 350 BIOMT2 9 0.031411 -0.999507 0.000000 0.00000 REMARK 350 BIOMT3 9 0.000000 0.000000 1.000000 20.73600 REMARK 350 BIOMT1 10 -0.047106 0.998890 0.000000 0.00000 REMARK 350 BIOMT2 10 -0.998890 -0.047106 0.000000 0.00000 REMARK 350 BIOMT3 10 0.000000 0.000000 1.000000 31.10400 REMARK 350 BIOMT1 11 0.998027 0.062791 0.000000 0.00000 REMARK 350 BIOMT2 11 -0.062791 0.998027 0.000000 0.00000 REMARK 350 BIOMT3 11 0.000000 0.000000 1.000000 41.47200 REMARK 350 BIOMT1 12 0.078459 -0.996917 0.000000 0.00000 REMARK 350 BIOMT2 12 0.996917 0.078459 0.000000 0.00000 REMARK 350 BIOMT3 12 0.000000 0.000000 1.000000 51.84000 REMARK 350 BIOMT1 13 -0.995562 -0.094108 0.000000 0.00000 REMARK 350 BIOMT2 13 0.094108 -0.995562 0.000000 0.00000 REMARK 350 BIOMT3 13 0.000000 0.000000 1.000000 62.20800 REMARK 350 BIOMT1 14 -0.109734 0.993961 0.000000 0.00000 REMARK 350 BIOMT2 14 -0.993961 -0.109734 0.000000 0.00000 REMARK 350 BIOMT3 14 0.000000 0.000000 1.000000 72.57600 REMARK 350 BIOMT1 15 0.992115 0.125333 0.000000 0.00000 REMARK 350 BIOMT2 15 -0.125333 0.992115 0.000000 0.00000 REMARK 350 BIOMT3 15 0.000000 0.000000 1.000000 82.94400 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -28 REMARK 465 ALA A -27 REMARK 465 ASN A -26 REMARK 465 TYR A -25 REMARK 465 PRO A -24 REMARK 465 HIS A -23 REMARK 465 THR A -22 REMARK 465 PRO A -21 REMARK 465 THR A -20 REMARK 465 GLN A -19 REMARK 465 ALA A -18 REMARK 465 ALA A -17 REMARK 465 LYS A -16 REMARK 465 ARG A -15 REMARK 465 ARG A -14 REMARK 465 LYS A -13 REMARK 465 GLU A -12 REMARK 465 THR A -11 REMARK 465 LEU A -10 REMARK 465 MET A -9 REMARK 465 LEU A -8 REMARK 465 GLN A -7 REMARK 465 LYS A -6 REMARK 465 LEU A -5 REMARK 465 ARG A -4 REMARK 465 ASN A -3 REMARK 465 ARG A -2 REMARK 465 LYS A -1 REMARK 465 GLY A 0 REMARK 465 PHE A 1 REMARK 465 MET a -19 REMARK 465 LYS a -18 REMARK 465 LYS a -17 REMARK 465 ILE a -16 REMARK 465 ILE a -15 REMARK 465 THR a -14 REMARK 465 ILE a -13 REMARK 465 VAL a -12 REMARK 465 ALA a -11 REMARK 465 MET a -10 REMARK 465 LEU a -9 REMARK 465 LEU a -8 REMARK 465 ALA a -7 REMARK 465 MET a -6 REMARK 465 GLN a -5 REMARK 465 GLY a -4 REMARK 465 ILE a -3 REMARK 465 ALA a -2 REMARK 465 ILE a -1 REMARK 465 ALA a 0 REMARK 465 GLN a 104 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN A 42 OG1 THR A 45 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 24 62.67 -105.29 REMARK 500 GLN A 55 14.11 58.90 REMARK 500 ALA a 36 16.52 59.21 REMARK 500 ASN a 61 51.24 -91.65 REMARK 500 ASN a 64 163.15 66.82 REMARK 500 ASP a 90 49.50 38.74 REMARK 500 SER a 97 -63.96 -94.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-25881 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF PILA-N AND PILA-C FROM GEOBACTER SULFURREDUCENS DBREF 7TGG A -28 61 UNP Q74D23 Q74D23_GEOSL 1 90 DBREF 7TGG a -19 104 UNP Q74D22 Q74D22_GEOSL 1 124 SEQRES 1 A 90 MET ALA ASN TYR PRO HIS THR PRO THR GLN ALA ALA LYS SEQRES 2 A 90 ARG ARG LYS GLU THR LEU MET LEU GLN LYS LEU ARG ASN SEQRES 3 A 90 ARG LYS GLY PHE THR LEU ILE GLU LEU LEU ILE VAL VAL SEQRES 4 A 90 ALA ILE ILE GLY ILE LEU ALA ALA ILE ALA ILE PRO GLN SEQRES 5 A 90 PHE SER ALA TYR ARG VAL LYS ALA TYR ASN SER ALA ALA SEQRES 6 A 90 SER SER ASP LEU ARG ASN LEU LYS THR ALA LEU GLU SER SEQRES 7 A 90 ALA PHE ALA ASP ASP GLN THR TYR PRO PRO GLU SER SEQRES 1 a 124 MET LYS LYS ILE ILE THR ILE VAL ALA MET LEU LEU ALA SEQRES 2 a 124 MET GLN GLY ILE ALA ILE ALA ALA GLY LYS ILE PRO THR SEQRES 3 a 124 THR THR MET GLY GLY LYS ASP PHE THR PHE LYS PRO SER SEQRES 4 a 124 THR ASN VAL SER VAL SER TYR PHE THR THR ASN GLY ALA SEQRES 5 a 124 THR SER THR ALA GLY THR VAL ASN THR ASP TYR ALA VAL SEQRES 6 a 124 ASN THR LYS ASN SER SER GLY ASN ARG VAL PHE THR SER SEQRES 7 a 124 THR ASN ASN THR SER ASN ILE TRP TYR ILE GLU ASN ASP SEQRES 8 a 124 ALA TRP LYS GLY LYS ALA VAL SER ASP SER ASP VAL THR SEQRES 9 a 124 ALA LEU GLY THR GLY ASP VAL GLY LYS SER ASP PHE SER SEQRES 10 a 124 GLY THR GLU TRP LYS SER GLN HELIX 1 AA1 ILE A 4 ALA A 17 1 14 HELIX 2 AA2 SER A 25 GLN A 55 1 31 SHEET 1 AA1 4 VAL a 22 THR a 28 0 SHEET 2 AA1 4 TYR a 43 ASN a 49 -1 O LYS a 48 N SER a 23 SHEET 3 AA1 4 VAL a 55 THR a 59 -1 O PHE a 56 N THR a 47 SHEET 4 AA1 4 TRP a 66 TYR a 67 -1 O TRP a 66 N THR a 57 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000