HEADER ISOMERASE 09-JAN-22 7TGT TITLE STRUCTURE OF CYCLOPHILIN D PEPTIDYL-PROLYL ISOMERASE DOMAIN BOUND TO TITLE 2 MACROCYCLIC INHIBITOR A26 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE F, MITOCHONDRIAL; COMPND 3 CHAIN: X; COMPND 4 SYNONYM: PPIASE F,CYCLOPHILIN D,CYP-D,CYPD,CYCLOPHILIN F, COMPND 5 MITOCHONDRIAL CYCLOPHILIN,CYP-M,ROTAMASE F; COMPND 6 EC: 5.2.1.8; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPIF, CYP3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: BL21DE3 KEYWDS PEPTIDYL-PROLYL ISOMERASE, OXIDATIVE STRESS, NECROSIS, MITOCHONDRIAL KEYWDS 2 PERMEABILITY, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.M.RANGWALA,M.A.SEELIGER,A.A.PETERSON,D.R.LIU REVDAT 4 18-OCT-23 7TGT 1 REMARK REVDAT 3 02-NOV-22 7TGT 1 JRNL REVDAT 2 12-OCT-22 7TGT 1 JRNL REVDAT 1 24-AUG-22 7TGT 0 JRNL AUTH A.A.PETERSON,A.M.RANGWALA,M.K.THAKUR,P.S.WARD,C.HUNG, JRNL AUTH 2 I.R.OUTHWAITE,A.I.CHAN,D.L.USANOV,V.K.MOOTHA,M.A.SEELIGER, JRNL AUTH 3 D.R.LIU JRNL TITL DISCOVERY AND MOLECULAR BASIS OF SUBTYPE-SELECTIVE JRNL TITL 2 CYCLOPHILIN INHIBITORS. JRNL REF NAT.CHEM.BIOL. V. 18 1184 2022 JRNL REFN ESSN 1552-4469 JRNL PMID 36163383 JRNL DOI 10.1038/S41589-022-01116-1 REMARK 2 REMARK 2 RESOLUTION. 1.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 78967 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.137 REMARK 3 R VALUE (WORKING SET) : 0.136 REMARK 3 FREE R VALUE : 0.145 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.850 REMARK 3 FREE R VALUE TEST SET COUNT : 3829 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.9200 - 3.1600 1.00 2982 141 0.1392 0.1372 REMARK 3 2 3.1600 - 2.5100 1.00 2961 141 0.1412 0.1564 REMARK 3 3 2.5100 - 2.1900 1.00 2958 132 0.1284 0.1482 REMARK 3 4 2.1900 - 1.9900 1.00 2907 160 0.1265 0.1331 REMARK 3 5 1.9900 - 1.8500 1.00 2910 158 0.1304 0.1303 REMARK 3 6 1.8500 - 1.7400 1.00 2923 154 0.1297 0.1475 REMARK 3 7 1.7400 - 1.6500 1.00 2901 158 0.1258 0.1368 REMARK 3 8 1.6500 - 1.5800 1.00 2900 168 0.1248 0.1544 REMARK 3 9 1.5800 - 1.5200 1.00 2864 181 0.1231 0.1225 REMARK 3 10 1.5200 - 1.4700 1.00 2938 153 0.1258 0.1332 REMARK 3 11 1.4700 - 1.4200 1.00 2913 158 0.1287 0.1369 REMARK 3 12 1.4200 - 1.3800 1.00 2868 140 0.1311 0.1464 REMARK 3 13 1.3800 - 1.3500 1.00 2940 154 0.1326 0.1425 REMARK 3 14 1.3500 - 1.3100 1.00 2912 133 0.1384 0.1227 REMARK 3 15 1.3100 - 1.2800 1.00 2906 154 0.1360 0.1642 REMARK 3 16 1.2800 - 1.2600 1.00 2943 132 0.1356 0.1381 REMARK 3 17 1.2600 - 1.2300 1.00 2921 126 0.1342 0.1554 REMARK 3 18 1.2300 - 1.2100 1.00 2908 121 0.1389 0.1384 REMARK 3 19 1.2100 - 1.1900 1.00 2949 141 0.1370 0.1449 REMARK 3 20 1.1900 - 1.1700 1.00 2915 139 0.1355 0.1668 REMARK 3 21 1.1700 - 1.1500 1.00 2934 139 0.1473 0.1634 REMARK 3 22 1.1500 - 1.1300 1.00 2843 166 0.1518 0.1514 REMARK 3 23 1.1300 - 1.1100 0.94 2762 151 0.1626 0.1536 REMARK 3 24 1.1100 - 1.1000 0.84 2424 141 0.1789 0.1749 REMARK 3 25 1.1000 - 1.0800 0.75 2172 119 0.1969 0.2247 REMARK 3 26 1.0800 - 1.0700 0.66 1904 99 0.2123 0.2281 REMARK 3 27 1.0700 - 1.0600 0.58 1680 70 0.2436 0.2071 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.070 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 12.836 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.05 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1349 REMARK 3 ANGLE : 1.037 1823 REMARK 3 CHIRALITY : 0.079 193 REMARK 3 PLANARITY : 0.007 237 REMARK 3 DIHEDRAL : 25.619 196 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 3 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.5908 20.0648 37.9335 REMARK 3 T TENSOR REMARK 3 T11: 0.0706 T22: 0.0724 REMARK 3 T33: 0.0627 T12: -0.0006 REMARK 3 T13: 0.0033 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.7766 L22: 0.9498 REMARK 3 L33: 0.1226 L12: -0.2693 REMARK 3 L13: 0.1050 L23: -0.1162 REMARK 3 S TENSOR REMARK 3 S11: -0.0097 S12: -0.0190 S13: 0.0535 REMARK 3 S21: 0.0221 S22: -0.0306 S23: -0.0402 REMARK 3 S31: -0.1072 S32: 0.0075 S33: -0.0019 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 31 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5985 14.0728 45.1288 REMARK 3 T TENSOR REMARK 3 T11: 0.0662 T22: 0.0850 REMARK 3 T33: 0.0662 T12: 0.0040 REMARK 3 T13: -0.0021 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.2211 L22: 0.3493 REMARK 3 L33: 0.0884 L12: -0.0972 REMARK 3 L13: -0.0408 L23: 0.0508 REMARK 3 S TENSOR REMARK 3 S11: -0.0162 S12: -0.0930 S13: 0.0422 REMARK 3 S21: 0.0555 S22: -0.0026 S23: -0.1066 REMARK 3 S31: -0.0255 S32: 0.0552 S33: -0.0060 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 43 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.6239 9.5700 33.4247 REMARK 3 T TENSOR REMARK 3 T11: 0.0745 T22: 0.0727 REMARK 3 T33: 0.0619 T12: 0.0100 REMARK 3 T13: -0.0017 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 0.5878 L22: 0.5046 REMARK 3 L33: 0.5429 L12: -0.2519 REMARK 3 L13: -0.0510 L23: -0.0620 REMARK 3 S TENSOR REMARK 3 S11: 0.0288 S12: 0.1153 S13: -0.0258 REMARK 3 S21: -0.0630 S22: -0.0222 S23: -0.0018 REMARK 3 S31: 0.0333 S32: 0.0231 S33: 0.0003 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 66 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.8311 3.7710 38.1594 REMARK 3 T TENSOR REMARK 3 T11: 0.0946 T22: 0.1011 REMARK 3 T33: 0.1093 T12: 0.0166 REMARK 3 T13: -0.0020 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 0.2855 L22: 0.2584 REMARK 3 L33: 0.0404 L12: -0.0817 REMARK 3 L13: 0.1075 L23: -0.0028 REMARK 3 S TENSOR REMARK 3 S11: 0.0443 S12: 0.0453 S13: -0.1531 REMARK 3 S21: -0.0369 S22: 0.0132 S23: -0.0994 REMARK 3 S31: 0.0925 S32: 0.1177 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 86 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.7372 8.7808 47.3867 REMARK 3 T TENSOR REMARK 3 T11: 0.0746 T22: 0.0875 REMARK 3 T33: 0.0731 T12: 0.0114 REMARK 3 T13: 0.0075 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 0.2230 L22: 0.2416 REMARK 3 L33: 0.2098 L12: 0.1855 REMARK 3 L13: -0.0996 L23: 0.0470 REMARK 3 S TENSOR REMARK 3 S11: -0.0477 S12: -0.1218 S13: -0.1371 REMARK 3 S21: 0.1033 S22: 0.0416 S23: 0.0379 REMARK 3 S31: 0.0075 S32: -0.0313 S33: -0.0017 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 102 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.6626 4.6324 41.1583 REMARK 3 T TENSOR REMARK 3 T11: 0.0691 T22: 0.0664 REMARK 3 T33: 0.1160 T12: 0.0019 REMARK 3 T13: 0.0063 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 0.2624 L22: 0.1502 REMARK 3 L33: 0.4197 L12: 0.0980 REMARK 3 L13: -0.2465 L23: -0.0673 REMARK 3 S TENSOR REMARK 3 S11: -0.0430 S12: -0.0003 S13: -0.2736 REMARK 3 S21: -0.0072 S22: 0.0178 S23: 0.0913 REMARK 3 S31: 0.0553 S32: -0.0481 S33: -0.0011 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 124 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.6063 12.4845 44.1801 REMARK 3 T TENSOR REMARK 3 T11: 0.0639 T22: 0.0646 REMARK 3 T33: 0.0706 T12: 0.0065 REMARK 3 T13: 0.0064 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 0.5715 L22: 0.1176 REMARK 3 L33: 0.3711 L12: -0.1897 REMARK 3 L13: -0.0202 L23: 0.1106 REMARK 3 S TENSOR REMARK 3 S11: -0.0335 S12: -0.0433 S13: -0.0778 REMARK 3 S21: 0.0796 S22: 0.0474 S23: 0.1136 REMARK 3 S31: -0.0449 S32: -0.0423 S33: 0.0040 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 137 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.1938 17.0010 29.3536 REMARK 3 T TENSOR REMARK 3 T11: 0.1016 T22: 0.0983 REMARK 3 T33: 0.0765 T12: 0.0093 REMARK 3 T13: -0.0034 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.1558 L22: 0.4180 REMARK 3 L33: 0.0877 L12: -0.0932 REMARK 3 L13: 0.0646 L23: -0.0827 REMARK 3 S TENSOR REMARK 3 S11: -0.0007 S12: 0.1084 S13: -0.0038 REMARK 3 S21: -0.0449 S22: -0.0772 S23: 0.1349 REMARK 3 S31: 0.0154 S32: -0.0031 S33: -0.0038 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 147 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.4928 6.6698 23.0593 REMARK 3 T TENSOR REMARK 3 T11: 0.1431 T22: 0.1270 REMARK 3 T33: 0.0774 T12: 0.0027 REMARK 3 T13: -0.0105 T23: -0.0418 REMARK 3 L TENSOR REMARK 3 L11: 1.7920 L22: 0.8422 REMARK 3 L33: 0.9718 L12: -0.4332 REMARK 3 L13: -0.4317 L23: -0.5735 REMARK 3 S TENSOR REMARK 3 S11: -0.0047 S12: 0.2814 S13: -0.2448 REMARK 3 S21: -0.2687 S22: -0.0582 S23: 0.1299 REMARK 3 S31: 0.1918 S32: -0.0799 S33: -0.0129 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 157 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.3575 20.5470 34.4126 REMARK 3 T TENSOR REMARK 3 T11: 0.0912 T22: 0.0893 REMARK 3 T33: 0.0873 T12: 0.0002 REMARK 3 T13: 0.0002 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 0.2465 L22: 0.3179 REMARK 3 L33: 0.2291 L12: -0.0402 REMARK 3 L13: -0.0506 L23: -0.2561 REMARK 3 S TENSOR REMARK 3 S11: -0.0023 S12: 0.0749 S13: 0.1153 REMARK 3 S21: -0.0767 S22: -0.0449 S23: -0.1264 REMARK 3 S31: -0.1790 S32: 0.1301 S33: 0.0125 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7TGT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1000262269. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97933 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR; REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78970 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.055 REMARK 200 RESOLUTION RANGE LOW (A) : 37.923 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 59.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.46100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2BIT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 29% PEG 3350 0.5 M KH2PO4 PROTEIN AND REMARK 280 INHIBITOR WERE MIXED IN RATIO 1:1.5 1 UL OF PROTEIN:INHIBITOR REMARK 280 COMPLEX WAS MIXED WITH 1 UL MOTHER LIQUOR, PH 7.3, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.54350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS X 149 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH X 301 O HOH X 479 1.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH X 411 O HOH X 454 1556 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS X 162 CB CYS X 162 SG -0.106 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE X 61 -83.29 -144.30 REMARK 500 THR X 120 65.23 -116.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH X 556 DISTANCE = 5.97 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7TGS RELATED DB: PDB REMARK 900 7TGS CONTAINS THE SAME PROTEINS COMPLEXED WITH A DIFFERENT REMARK 900 MACROCYCLIC INHIBITOR. DBREF 7TGT X 4 166 UNP P30405 PPIF_HUMAN 45 207 SEQADV 7TGT ALA X 3 UNP P30405 EXPRESSION TAG SEQADV 7TGT ILE X 134 UNP P30405 LYS 175 ENGINEERED MUTATION SEQRES 1 X 164 ALA ASN PRO LEU VAL TYR LEU ASP VAL ASP ALA ASN GLY SEQRES 2 X 164 LYS PRO LEU GLY ARG VAL VAL LEU GLU LEU LYS ALA ASP SEQRES 3 X 164 VAL VAL PRO LYS THR ALA GLU ASN PHE ARG ALA LEU CYS SEQRES 4 X 164 THR GLY GLU LYS GLY PHE GLY TYR LYS GLY SER THR PHE SEQRES 5 X 164 HIS ARG VAL ILE PRO SER PHE MET CYS GLN ALA GLY ASP SEQRES 6 X 164 PHE THR ASN HIS ASN GLY THR GLY GLY LYS SER ILE TYR SEQRES 7 X 164 GLY SER ARG PHE PRO ASP GLU ASN PHE THR LEU LYS HIS SEQRES 8 X 164 VAL GLY PRO GLY VAL LEU SER MET ALA ASN ALA GLY PRO SEQRES 9 X 164 ASN THR ASN GLY SER GLN PHE PHE ILE CYS THR ILE LYS SEQRES 10 X 164 THR ASP TRP LEU ASP GLY LYS HIS VAL VAL PHE GLY HIS SEQRES 11 X 164 VAL ILE GLU GLY MET ASP VAL VAL LYS LYS ILE GLU SER SEQRES 12 X 164 PHE GLY SER LYS SER GLY ARG THR SER LYS LYS ILE VAL SEQRES 13 X 164 ILE THR ASP CYS GLY GLN LEU SER HET I4F X 201 107 HETNAM I4F (4S,7S,11R,13E,19S)-N-[2-(2-AMINOETHOXY)ETHYL]-7- HETNAM 2 I4F BENZYL-4-[(FURAN-2-YL)METHYL]-3,6,12,15,21-PENTAOXO-1, HETNAM 3 I4F 3,4,5,6,7,8,9,10,12,15,16,17,18,19,20,21,22- HETNAM 4 I4F OCTADECAHYDRO-2H-7,11-METHANO-2,5,11,16,20- HETNAM 5 I4F BENZOPENTAAZACYCLOTETRACOSINE-19-CARBOXAMIDE FORMUL 2 I4F C41 H51 N7 O8 FORMUL 3 HOH *256(H2 O) HELIX 1 AA1 VAL X 30 GLY X 43 1 14 HELIX 2 AA2 THR X 120 ASP X 124 5 5 HELIX 3 AA3 GLY X 136 PHE X 146 1 11 SHEET 1 AA1 8 PHE X 54 ILE X 58 0 SHEET 2 AA1 8 MET X 62 ALA X 65 -1 O GLN X 64 N ARG X 56 SHEET 3 AA1 8 PHE X 113 CYS X 116 -1 O PHE X 113 N ALA X 65 SHEET 4 AA1 8 VAL X 98 MET X 101 -1 N VAL X 98 O CYS X 116 SHEET 5 AA1 8 VAL X 129 GLU X 135 -1 O PHE X 130 N LEU X 99 SHEET 6 AA1 8 LYS X 16 LEU X 25 -1 N VAL X 22 O ILE X 134 SHEET 7 AA1 8 LEU X 6 ALA X 13 -1 N VAL X 11 O LEU X 18 SHEET 8 AA1 8 ILE X 157 GLN X 164 -1 O ASP X 161 N ASP X 10 CRYST1 36.061 67.087 38.662 90.00 101.22 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027731 0.000000 0.005500 0.00000 SCALE2 0.000000 0.014906 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026369 0.00000