HEADER IMMUNE SYSTEM/TOXIN 10-JAN-22 7TH3 TITLE SINGLE-DOMAIN VHH INTRABODIES NEUTRALIZE RICIN TOXIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RICIN CHAIN A; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.2.22; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: VHH ANTIBODY; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RICINUS COMMUNIS; SOURCE 3 ORGANISM_COMMON: CASTOR BEAN; SOURCE 4 ORGANISM_TAXID: 3988; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: VICUGNA PACOS; SOURCE 10 ORGANISM_TAXID: 30538; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 13 EXPRESSION_SYSTEM_STRAIN: 'BL21-GOLD(DE3)PLYSS AG' KEYWDS ANTIBODY-ANTIGEN COMPLEX, IMMUNE SYSTEM, IMMUNE SYSTEM-TOXIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.J.RUDOLPH REVDAT 2 18-OCT-23 7TH3 1 REMARK REVDAT 1 12-OCT-22 7TH3 0 JRNL AUTH T.F.CZAJKA,D.J.VANCE,S.DAVIS,M.J.RUDOLPH,N.J.MANTIS JRNL TITL SINGLE-DOMAIN ANTIBODIES NEUTRALIZE RICIN TOXIN JRNL TITL 2 INTRACELLULARLY BY BLOCKING ACCESS TO RIBOSOMAL P-STALK JRNL TITL 3 PROTEINS. JRNL REF J.BIOL.CHEM. V. 298 01742 2022 JRNL REFN ESSN 1083-351X JRNL PMID 35182523 JRNL DOI 10.1016/J.JBC.2022.101742 REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.420 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 15296 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.249 REMARK 3 R VALUE (WORKING SET) : 0.248 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.580 REMARK 3 FREE R VALUE TEST SET COUNT : 701 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.7970 - 3.9180 0.98 2932 179 0.2010 0.2239 REMARK 3 2 3.9180 - 3.1100 0.98 2939 138 0.2299 0.2737 REMARK 3 3 3.1100 - 2.7169 0.98 2881 163 0.2996 0.3225 REMARK 3 4 2.7169 - 2.4685 0.99 3004 97 0.3147 0.3520 REMARK 3 5 2.4685 - 2.2920 0.96 2839 124 0.3309 0.3894 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2997 REMARK 3 ANGLE : 0.629 4076 REMARK 3 CHIRALITY : 0.043 453 REMARK 3 PLANARITY : 0.005 534 REMARK 3 DIHEDRAL : 15.153 1785 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.5879 1.9849 21.6407 REMARK 3 T TENSOR REMARK 3 T11: 0.4814 T22: 0.1796 REMARK 3 T33: 0.1938 T12: -0.0016 REMARK 3 T13: 0.0759 T23: 0.0651 REMARK 3 L TENSOR REMARK 3 L11: 2.7042 L22: 3.0604 REMARK 3 L33: 4.9846 L12: 1.6519 REMARK 3 L13: -0.4419 L23: 0.1595 REMARK 3 S TENSOR REMARK 3 S11: 0.3213 S12: 0.2855 S13: 0.0519 REMARK 3 S21: 0.0809 S22: 0.2603 S23: -1.3141 REMARK 3 S31: -0.4288 S32: 0.9580 S33: -0.3690 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 18 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.4288 1.7966 13.8042 REMARK 3 T TENSOR REMARK 3 T11: 0.2428 T22: 0.2243 REMARK 3 T33: 0.2201 T12: -0.0114 REMARK 3 T13: -0.0040 T23: 0.0273 REMARK 3 L TENSOR REMARK 3 L11: 2.4092 L22: 5.5661 REMARK 3 L33: 4.2266 L12: 1.6757 REMARK 3 L13: -0.4623 L23: 0.4777 REMARK 3 S TENSOR REMARK 3 S11: -0.0988 S12: 0.2997 S13: 0.0444 REMARK 3 S21: -0.4208 S22: 0.6533 S23: 0.0263 REMARK 3 S31: -0.2413 S32: -0.3508 S33: -0.3849 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.4058 -12.4795 6.2779 REMARK 3 T TENSOR REMARK 3 T11: 0.5736 T22: 0.4971 REMARK 3 T33: 0.5012 T12: -0.2916 REMARK 3 T13: -0.0669 T23: 0.0943 REMARK 3 L TENSOR REMARK 3 L11: 0.5109 L22: 3.2472 REMARK 3 L33: 2.6949 L12: 1.0405 REMARK 3 L13: -0.5483 L23: 0.4259 REMARK 3 S TENSOR REMARK 3 S11: -0.3103 S12: 0.1177 S13: -0.0619 REMARK 3 S21: -0.2714 S22: 0.5715 S23: -0.5030 REMARK 3 S31: 0.7065 S32: -0.5571 S33: -0.2535 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 43 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.3250 -17.8992 17.4909 REMARK 3 T TENSOR REMARK 3 T11: 0.5413 T22: -1.1158 REMARK 3 T33: -0.8799 T12: -0.9972 REMARK 3 T13: 0.5054 T23: 1.5315 REMARK 3 L TENSOR REMARK 3 L11: 1.2361 L22: 2.8461 REMARK 3 L33: 0.8950 L12: -0.0030 REMARK 3 L13: 0.4383 L23: 0.2240 REMARK 3 S TENSOR REMARK 3 S11: -0.2101 S12: 0.1453 S13: -0.4078 REMARK 3 S21: 0.9366 S22: 0.8351 S23: -0.5819 REMARK 3 S31: 1.4067 S32: -0.6087 S33: -0.2495 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 53 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.3486 -4.5824 25.1433 REMARK 3 T TENSOR REMARK 3 T11: 0.3838 T22: 0.1615 REMARK 3 T33: 0.2660 T12: -0.1002 REMARK 3 T13: -0.1263 T23: 0.1287 REMARK 3 L TENSOR REMARK 3 L11: 3.4358 L22: 5.2547 REMARK 3 L33: 3.6119 L12: -0.2637 REMARK 3 L13: -0.3519 L23: 0.3753 REMARK 3 S TENSOR REMARK 3 S11: 0.0794 S12: 0.4789 S13: -0.1769 REMARK 3 S21: 0.4530 S22: 0.0270 S23: -0.9571 REMARK 3 S31: -0.0074 S32: 0.1673 S33: -0.2935 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 67 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.1104 -5.8922 30.9805 REMARK 3 T TENSOR REMARK 3 T11: 0.3334 T22: 0.3443 REMARK 3 T33: 0.2333 T12: -0.1665 REMARK 3 T13: -0.0070 T23: 0.1897 REMARK 3 L TENSOR REMARK 3 L11: 2.5850 L22: 2.8099 REMARK 3 L33: 5.3148 L12: -1.6862 REMARK 3 L13: 1.1464 L23: 1.1945 REMARK 3 S TENSOR REMARK 3 S11: 0.1246 S12: -0.2350 S13: 0.1065 REMARK 3 S21: 0.2477 S22: 0.1624 S23: 0.0595 REMARK 3 S31: 0.7254 S32: -0.9827 S33: -0.2420 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.1211 -10.9312 35.4899 REMARK 3 T TENSOR REMARK 3 T11: 0.8825 T22: 0.3986 REMARK 3 T33: 0.2659 T12: -0.2118 REMARK 3 T13: -0.1881 T23: 0.1568 REMARK 3 L TENSOR REMARK 3 L11: 2.7892 L22: 3.2079 REMARK 3 L33: 3.8866 L12: -0.9010 REMARK 3 L13: 0.4279 L23: 0.6361 REMARK 3 S TENSOR REMARK 3 S11: 0.6062 S12: -0.8208 S13: -0.5572 REMARK 3 S21: 0.2478 S22: 0.2045 S23: -0.1425 REMARK 3 S31: 1.7430 S32: -1.1084 S33: -0.2678 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 123 THROUGH 140 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.9064 3.6929 30.2287 REMARK 3 T TENSOR REMARK 3 T11: 0.5256 T22: 1.0601 REMARK 3 T33: 0.5146 T12: 0.0633 REMARK 3 T13: 0.2406 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 1.9723 L22: 0.1390 REMARK 3 L33: 3.8071 L12: -0.4944 REMARK 3 L13: -0.3921 L23: 0.0949 REMARK 3 S TENSOR REMARK 3 S11: 0.2298 S12: -0.3410 S13: 0.2268 REMARK 3 S21: -0.1175 S22: -0.4423 S23: 0.8237 REMARK 3 S31: -0.4810 S32: -1.1735 S33: -0.0933 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 141 THROUGH 230 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.8235 2.4005 21.0733 REMARK 3 T TENSOR REMARK 3 T11: 0.1545 T22: 0.8903 REMARK 3 T33: 0.3478 T12: 0.2459 REMARK 3 T13: 0.1141 T23: 0.1777 REMARK 3 L TENSOR REMARK 3 L11: 1.7708 L22: 2.5466 REMARK 3 L33: 4.2727 L12: -0.1922 REMARK 3 L13: 0.8486 L23: -1.3380 REMARK 3 S TENSOR REMARK 3 S11: -0.3289 S12: -0.3727 S13: 0.2064 REMARK 3 S21: 0.0966 S22: 0.5918 S23: 0.5648 REMARK 3 S31: -1.0718 S32: -2.3218 S33: -0.1282 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 231 THROUGH 241 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.1764 3.2606 11.7835 REMARK 3 T TENSOR REMARK 3 T11: 0.5303 T22: 1.3870 REMARK 3 T33: 0.7205 T12: 0.1851 REMARK 3 T13: -0.0352 T23: 0.1026 REMARK 3 L TENSOR REMARK 3 L11: 1.5315 L22: 3.6632 REMARK 3 L33: 3.6440 L12: -0.8855 REMARK 3 L13: -0.9248 L23: -2.5833 REMARK 3 S TENSOR REMARK 3 S11: -0.3749 S12: -0.3015 S13: 0.3499 REMARK 3 S21: -0.3477 S22: 0.1995 S23: 0.7190 REMARK 3 S31: -0.1144 S32: -1.5380 S33: -0.3399 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 242 THROUGH 263 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.0138 -10.8242 7.7962 REMARK 3 T TENSOR REMARK 3 T11: 0.2522 T22: 0.9929 REMARK 3 T33: 0.4511 T12: -0.2103 REMARK 3 T13: -0.2467 T23: 0.2673 REMARK 3 L TENSOR REMARK 3 L11: 0.4106 L22: 2.3772 REMARK 3 L33: 2.7566 L12: 0.6026 REMARK 3 L13: 0.2254 L23: 2.2007 REMARK 3 S TENSOR REMARK 3 S11: -0.0307 S12: 0.9195 S13: 0.1553 REMARK 3 S21: -0.3320 S22: 0.0085 S23: 0.7491 REMARK 3 S31: 1.7098 S32: -1.2345 S33: -0.2814 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.6286 -8.7552 -15.3135 REMARK 3 T TENSOR REMARK 3 T11: 0.4697 T22: 0.1670 REMARK 3 T33: 0.4233 T12: -0.1559 REMARK 3 T13: -0.0479 T23: -0.0285 REMARK 3 L TENSOR REMARK 3 L11: 1.8328 L22: 3.1097 REMARK 3 L33: 1.4177 L12: -0.5184 REMARK 3 L13: 0.7522 L23: -0.2413 REMARK 3 S TENSOR REMARK 3 S11: 0.0989 S12: 0.0806 S13: -0.5527 REMARK 3 S21: 0.0240 S22: -0.2066 S23: -0.7199 REMARK 3 S31: 0.4363 S32: -0.2021 S33: 0.0607 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 25 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.3643 -16.5207 -3.3786 REMARK 3 T TENSOR REMARK 3 T11: 0.3397 T22: 0.4054 REMARK 3 T33: 0.3657 T12: -0.5290 REMARK 3 T13: -0.1421 T23: 0.0675 REMARK 3 L TENSOR REMARK 3 L11: 3.8809 L22: 4.2027 REMARK 3 L33: 2.0021 L12: 0.2508 REMARK 3 L13: 7.8908 L23: -4.1648 REMARK 3 S TENSOR REMARK 3 S11: 0.6933 S12: -0.2230 S13: 0.4191 REMARK 3 S21: 0.4845 S22: 0.2104 S23: 0.7359 REMARK 3 S31: -0.1658 S32: -1.0850 S33: -0.3372 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 32 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.9365 -2.1305 -4.5447 REMARK 3 T TENSOR REMARK 3 T11: 0.2194 T22: 0.3204 REMARK 3 T33: 0.2911 T12: -0.0633 REMARK 3 T13: 0.0088 T23: 0.0830 REMARK 3 L TENSOR REMARK 3 L11: 2.7248 L22: 2.6864 REMARK 3 L33: 3.4543 L12: -1.3686 REMARK 3 L13: 0.7029 L23: 0.8365 REMARK 3 S TENSOR REMARK 3 S11: 0.0742 S12: 0.0263 S13: 0.4300 REMARK 3 S21: 0.0731 S22: 0.0507 S23: -0.0215 REMARK 3 S31: 0.1823 S32: -0.3535 S33: -0.1355 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 61 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.1078 -3.7889 -13.6742 REMARK 3 T TENSOR REMARK 3 T11: 0.4181 T22: 0.4309 REMARK 3 T33: 0.3557 T12: -0.1144 REMARK 3 T13: -0.1281 T23: 0.0986 REMARK 3 L TENSOR REMARK 3 L11: 4.5615 L22: 6.1573 REMARK 3 L33: 1.4481 L12: 0.9680 REMARK 3 L13: 0.0981 L23: 1.3180 REMARK 3 S TENSOR REMARK 3 S11: 0.1293 S12: 0.1330 S13: 0.1923 REMARK 3 S21: -0.3198 S22: -0.0958 S23: 0.5944 REMARK 3 S31: 0.3329 S32: -0.7862 S33: -0.2849 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 84 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.4271 -4.1248 -6.7848 REMARK 3 T TENSOR REMARK 3 T11: 0.3561 T22: 0.2872 REMARK 3 T33: 0.2682 T12: -0.1262 REMARK 3 T13: -0.0514 T23: 0.0376 REMARK 3 L TENSOR REMARK 3 L11: 3.1491 L22: 0.6193 REMARK 3 L33: 2.3147 L12: 1.1257 REMARK 3 L13: -1.1883 L23: -0.6310 REMARK 3 S TENSOR REMARK 3 S11: 0.0273 S12: -0.0787 S13: -0.1184 REMARK 3 S21: 0.0252 S22: 0.0772 S23: 0.1186 REMARK 3 S31: 0.4636 S32: -0.1556 S33: -0.1417 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7TH3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1000262290. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15311 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.292 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.17700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1RTC,4LGR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 418 MM AMMONIUM CHLORIDE, 22% PEG REMARK 280 3350, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.55650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 1 REMARK 465 PHE A 2 REMARK 465 PRO A 3 REMARK 465 LYS A 4 REMARK 465 ALA A 66 REMARK 465 LYS A 239 REMARK 465 SER A 264 REMARK 465 SER A 265 REMARK 465 GLN A 266 REMARK 465 PHE A 267 REMARK 465 GLN B 1 REMARK 465 LYS B 54 REMARK 465 GLY B 55 REMARK 465 SER B 121 REMARK 465 GLU B 122 REMARK 465 PRO B 123 REMARK 465 LYS B 124 REMARK 465 THR B 125 REMARK 465 PRO B 126 REMARK 465 LYS B 127 REMARK 465 PRO B 128 REMARK 465 GLN B 129 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 304 O HOH A 373 2.14 REMARK 500 O GLN A 128 O HOH A 301 2.18 REMARK 500 O HOH A 336 O HOH A 438 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 374 O HOH B 202 1556 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 64 -74.25 -158.34 REMARK 500 ASN A 78 11.92 -143.00 REMARK 500 ALA A 79 17.91 59.67 REMARK 500 ASN A 97 -154.90 -150.68 REMARK 500 LEU A 107 -70.25 -71.54 REMARK 500 PHE A 108 77.67 -117.81 REMARK 500 ILE A 175 -65.03 -120.94 REMARK 500 ARG A 234 -154.76 -103.50 REMARK 500 ALA B 103 32.98 -99.33 REMARK 500 ALA B 107 70.17 49.97 REMARK 500 REMARK 500 REMARK: NULL DBREF 7TH3 A 1 267 UNP P02879 RICI_RICCO 36 302 DBREF 7TH3 B 1 129 PDB 7TH3 7TH3 1 129 SEQRES 1 A 267 ILE PHE PRO LYS GLN TYR PRO ILE ILE ASN PHE THR THR SEQRES 2 A 267 ALA GLY ALA THR VAL GLN SER TYR THR ASN PHE ILE ARG SEQRES 3 A 267 ALA VAL ARG GLY ARG LEU THR THR GLY ALA ASP VAL ARG SEQRES 4 A 267 HIS GLU ILE PRO VAL LEU PRO ASN ARG VAL GLY LEU PRO SEQRES 5 A 267 ILE ASN GLN ARG PHE ILE LEU VAL GLU LEU SER ASN HIS SEQRES 6 A 267 ALA GLU LEU SER VAL THR LEU ALA LEU ASP VAL THR ASN SEQRES 7 A 267 ALA TYR VAL VAL GLY TYR ARG ALA GLY ASN SER ALA TYR SEQRES 8 A 267 PHE PHE HIS PRO ASP ASN GLN GLU ASP ALA GLU ALA ILE SEQRES 9 A 267 THR HIS LEU PHE THR ASP VAL GLN ASN ARG TYR THR PHE SEQRES 10 A 267 ALA PHE GLY GLY ASN TYR ASP ARG LEU GLU GLN LEU ALA SEQRES 11 A 267 GLY ASN LEU ARG GLU ASN ILE GLU LEU GLY ASN GLY PRO SEQRES 12 A 267 LEU GLU GLU ALA ILE SER ALA LEU TYR TYR TYR SER THR SEQRES 13 A 267 GLY GLY THR GLN LEU PRO THR LEU ALA ARG SER PHE ILE SEQRES 14 A 267 ILE CYS ILE GLN MET ILE SER GLU ALA ALA ARG PHE GLN SEQRES 15 A 267 TYR ILE GLU GLY GLU MET ARG THR ARG ILE ARG TYR ASN SEQRES 16 A 267 ARG ARG SER ALA PRO ASP PRO SER VAL ILE THR LEU GLU SEQRES 17 A 267 ASN SER TRP GLY ARG LEU SER THR ALA ILE GLN GLU SER SEQRES 18 A 267 ASN GLN GLY ALA PHE ALA SER PRO ILE GLN LEU GLN ARG SEQRES 19 A 267 ARG ASN GLY SER LYS PHE SER VAL TYR ASP VAL SER ILE SEQRES 20 A 267 LEU ILE PRO ILE ILE ALA LEU MET VAL TYR ARG CYS ALA SEQRES 21 A 267 PRO PRO PRO SER SER GLN PHE SEQRES 1 B 129 GLN VAL GLN LEU VAL GLU THR GLY GLY GLY SER VAL GLN SEQRES 2 B 129 ALA GLY ASP SER LEU THR LEU SER CYS ALA ALA SER GLU SEQRES 3 B 129 ARG ILE PHE SER HIS TYR ALA MET GLY TRP TYR ARG GLN SEQRES 4 B 129 VAL PRO GLY LYS GLU ARG GLU PRO VAL ALA ALA LEU ARG SEQRES 5 B 129 LEU LYS GLY THR GLU THR ASN TYR ALA ASP SER VAL GLU SEQRES 6 B 129 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 B 129 MET TYR LEU ARG MET SER SER LEU LYS PRO GLU ASP THR SEQRES 8 B 129 ALA VAL TYR TYR CYS ALA ALA GLY SER TYR ALA ALA ILE SEQRES 9 B 129 LEU TYR ALA PRO SER TYR TRP GLY GLN GLY THR GLN VAL SEQRES 10 B 129 THR VAL SER SER GLU PRO LYS THR PRO LYS PRO GLN FORMUL 3 HOH *239(H2 O) HELIX 1 AA1 THR A 17 THR A 33 1 17 HELIX 2 AA2 PRO A 52 GLN A 55 5 4 HELIX 3 AA3 GLN A 98 THR A 105 1 8 HELIX 4 AA4 ASN A 122 GLY A 131 1 10 HELIX 5 AA5 GLY A 140 GLY A 157 1 18 HELIX 6 AA6 GLN A 160 ILE A 175 1 16 HELIX 7 AA7 ILE A 175 PHE A 181 1 7 HELIX 8 AA8 PHE A 181 TYR A 194 1 14 HELIX 9 AA9 ASP A 201 SER A 210 1 10 HELIX 10 AB1 SER A 210 SER A 221 1 12 HELIX 11 AB2 SER B 25 TYR B 32 1 8 HELIX 12 AB3 LYS B 87 THR B 91 5 5 HELIX 13 AB4 TYR B 101 LEU B 105 5 5 SHEET 1 AA1 6 ILE A 8 THR A 12 0 SHEET 2 AA1 6 PHE A 57 SER A 63 1 O GLU A 61 N ILE A 9 SHEET 3 AA1 6 SER A 69 ASP A 75 -1 O VAL A 70 N LEU A 62 SHEET 4 AA1 6 VAL A 81 ALA A 86 -1 O VAL A 82 N ALA A 73 SHEET 5 AA1 6 SER A 89 PHE A 92 -1 O TYR A 91 N TYR A 84 SHEET 6 AA1 6 ASN A 113 THR A 116 1 O TYR A 115 N PHE A 92 SHEET 1 AA2 2 VAL A 38 ARG A 39 0 SHEET 2 AA2 2 ILE A 42 PRO A 43 -1 O ILE A 42 N ARG A 39 SHEET 1 AA3 2 ALA A 225 GLN A 231 0 SHEET 2 AA3 2 SER A 241 ASP A 244 -1 O TYR A 243 N PHE A 226 SHEET 1 AA4 4 LEU B 4 THR B 7 0 SHEET 2 AA4 4 LEU B 18 ALA B 24 -1 O SER B 21 N THR B 7 SHEET 3 AA4 4 THR B 78 MET B 83 -1 O MET B 83 N LEU B 18 SHEET 4 AA4 4 PHE B 68 ASP B 73 -1 N THR B 69 O ARG B 82 SHEET 1 AA5 6 GLY B 10 VAL B 12 0 SHEET 2 AA5 6 THR B 115 VAL B 119 1 O THR B 118 N GLY B 10 SHEET 3 AA5 6 ALA B 92 GLY B 99 -1 N TYR B 94 O THR B 115 SHEET 4 AA5 6 ALA B 33 GLN B 39 -1 N TYR B 37 O TYR B 95 SHEET 5 AA5 6 GLU B 46 ARG B 52 -1 O VAL B 48 N TRP B 36 SHEET 6 AA5 6 GLU B 57 TYR B 60 -1 O GLU B 57 N ARG B 52 SHEET 1 AA6 4 GLY B 10 VAL B 12 0 SHEET 2 AA6 4 THR B 115 VAL B 119 1 O THR B 118 N GLY B 10 SHEET 3 AA6 4 ALA B 92 GLY B 99 -1 N TYR B 94 O THR B 115 SHEET 4 AA6 4 TYR B 110 TRP B 111 -1 O TYR B 110 N ALA B 98 SSBOND 1 CYS B 22 CYS B 96 1555 1555 2.05 CRYST1 38.337 67.113 68.100 90.00 91.06 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026084 0.000000 0.000484 0.00000 SCALE2 0.000000 0.014900 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014687 0.00000