HEADER DNA-RNA HYBRID 10-JAN-22 7THB TITLE CRYSTAL STRUCTURE OF AN RNA-5'/DNA-3' STRAND EXCHANGE JUNCTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*GP*TP*AP*AP*GP*CP*AP*GP*CP*AP*TP*C)-3'); COMPND 3 CHAIN: A, D, G; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RNA (5'-R(*AP*GP*CP*UP*UP*AP*C)-3'); COMPND 7 CHAIN: B, E, H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA (5'-D(*GP*AP*TP*GP*CP*TP*C)-3'); COMPND 11 CHAIN: C, F, I; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630 KEYWDS STRAND EXCHANGE JUNCTION, DNA, RNA, DNA:DNA DUPLEX, RNA:DNA HYBRID, KEYWDS 2 A-FORM/B-FORM JUNCTION, NUCLEIC ACID, DNA-RNA HYBRID EXPDTA X-RAY DIFFRACTION AUTHOR J.C.COFSKY,G.J.KNOTT,C.L.GEE,J.A.DOUDNA REVDAT 3 03-APR-24 7THB 1 REMARK REVDAT 2 28-FEB-24 7THB 1 REMARK REVDAT 1 27-APR-22 7THB 0 JRNL AUTH J.C.COFSKY,G.J.KNOTT,C.L.GEE,J.A.DOUDNA JRNL TITL CRYSTAL STRUCTURE OF AN RNA/DNA STRAND EXCHANGE JUNCTION. JRNL REF PLOS ONE V. 17 63547 2022 JRNL REFN ESSN 1932-6203 JRNL PMID 35436289 JRNL DOI 10.1371/JOURNAL.PONE.0263547 REMARK 2 REMARK 2 RESOLUTION. 1.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 64.5 REMARK 3 NUMBER OF REFLECTIONS : 24719 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1223 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.3400 - 3.4100 0.97 3964 184 0.1668 0.2083 REMARK 3 2 3.4000 - 2.7000 0.96 3873 209 0.2774 0.3253 REMARK 3 3 2.7000 - 2.3600 0.97 3958 177 0.3464 0.3439 REMARK 3 4 2.3600 - 2.1500 0.93 3747 212 0.3692 0.3994 REMARK 3 5 2.1500 - 1.9900 0.74 2957 187 0.3673 0.4524 REMARK 3 6 1.9900 - 1.8700 0.55 2228 118 0.3518 0.3772 REMARK 3 7 1.8700 - 1.7800 0.39 1582 88 0.3787 0.3895 REMARK 3 8 1.7800 - 1.7000 0.23 960 37 0.3721 0.3861 REMARK 3 9 1.7000 - 1.6400 0.06 227 11 0.3798 0.2180 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.298 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 50.115 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 1770 REMARK 3 ANGLE : 1.416 2721 REMARK 3 CHIRALITY : 0.092 324 REMARK 3 PLANARITY : 0.016 78 REMARK 3 DIHEDRAL : 27.530 786 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:4) REMARK 3 ORIGIN FOR THE GROUP (A): -18.1226 -1.5031 -3.5880 REMARK 3 T TENSOR REMARK 3 T11: 0.5662 T22: 0.7484 REMARK 3 T33: 0.6397 T12: -0.0172 REMARK 3 T13: 0.0688 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 4.7530 L22: 3.6993 REMARK 3 L33: 5.9699 L12: -0.3727 REMARK 3 L13: 0.9492 L23: -2.4811 REMARK 3 S TENSOR REMARK 3 S11: 0.2684 S12: 0.2622 S13: -0.3733 REMARK 3 S21: -0.3682 S22: 0.2144 S23: 0.1545 REMARK 3 S31: 0.5028 S32: -1.0915 S33: -0.2889 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 5:8) REMARK 3 ORIGIN FOR THE GROUP (A): -14.3469 9.6366 -13.1167 REMARK 3 T TENSOR REMARK 3 T11: 0.4834 T22: 0.6745 REMARK 3 T33: 0.6505 T12: 0.0010 REMARK 3 T13: -0.0745 T23: 0.2018 REMARK 3 L TENSOR REMARK 3 L11: 6.1115 L22: 3.6384 REMARK 3 L33: 6.1857 L12: 0.4197 REMARK 3 L13: 0.6995 L23: -0.3833 REMARK 3 S TENSOR REMARK 3 S11: -0.3125 S12: 1.2093 S13: 1.0183 REMARK 3 S21: -0.8128 S22: 0.2320 S23: 0.5670 REMARK 3 S31: -0.1213 S32: -0.6637 S33: 0.0440 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 9:12) REMARK 3 ORIGIN FOR THE GROUP (A): 1.2730 9.9059 -12.7510 REMARK 3 T TENSOR REMARK 3 T11: 0.3430 T22: 0.4421 REMARK 3 T33: 0.4016 T12: -0.0702 REMARK 3 T13: -0.0519 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 4.3859 L22: 2.5379 REMARK 3 L33: 4.3258 L12: -0.1051 REMARK 3 L13: 0.0167 L23: -0.2551 REMARK 3 S TENSOR REMARK 3 S11: -0.3179 S12: 0.3468 S13: 0.3688 REMARK 3 S21: -0.0570 S22: 0.0784 S23: 0.0147 REMARK 3 S31: -0.3088 S32: 0.0363 S33: 0.2346 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 1:7) REMARK 3 ORIGIN FOR THE GROUP (A): -18.5167 6.8347 -2.9188 REMARK 3 T TENSOR REMARK 3 T11: 0.3237 T22: 0.6338 REMARK 3 T33: 0.5820 T12: 0.0227 REMARK 3 T13: 0.0109 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 4.3828 L22: 3.7382 REMARK 3 L33: 4.7178 L12: 0.0028 REMARK 3 L13: -0.2435 L23: -1.0485 REMARK 3 S TENSOR REMARK 3 S11: -0.0391 S12: -0.3285 S13: 0.2343 REMARK 3 S21: 0.3666 S22: 0.1228 S23: 0.9651 REMARK 3 S31: 0.3129 S32: -1.7275 S33: -0.0595 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN C AND RESID 1:7) REMARK 3 ORIGIN FOR THE GROUP (A): -2.9741 5.4563 -13.1862 REMARK 3 T TENSOR REMARK 3 T11: 0.3288 T22: 0.4318 REMARK 3 T33: 0.2842 T12: 0.0101 REMARK 3 T13: 0.0090 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 4.2663 L22: 3.5389 REMARK 3 L33: 7.4742 L12: 0.5151 REMARK 3 L13: -1.6265 L23: -0.8100 REMARK 3 S TENSOR REMARK 3 S11: -0.1632 S12: 1.1105 S13: -0.7717 REMARK 3 S21: -0.5206 S22: 0.3610 S23: 0.2046 REMARK 3 S31: 0.9869 S32: -0.1922 S33: -0.2402 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN D AND RESID 1:4) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0840 -3.4077 11.0071 REMARK 3 T TENSOR REMARK 3 T11: 0.4447 T22: 1.0581 REMARK 3 T33: 0.8255 T12: 0.0028 REMARK 3 T13: 0.0493 T23: 0.3733 REMARK 3 L TENSOR REMARK 3 L11: 4.7419 L22: 6.8468 REMARK 3 L33: 7.8566 L12: 1.5215 REMARK 3 L13: -4.3298 L23: 0.4140 REMARK 3 S TENSOR REMARK 3 S11: -0.5954 S12: -0.8030 S13: -0.8826 REMARK 3 S21: 0.6155 S22: 0.3202 S23: -0.1196 REMARK 3 S31: 0.9458 S32: 1.0101 S33: 0.2800 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN D AND RESID 5:8) REMARK 3 ORIGIN FOR THE GROUP (A): 11.8517 4.5996 23.5764 REMARK 3 T TENSOR REMARK 3 T11: 0.6140 T22: 1.5116 REMARK 3 T33: 0.4825 T12: -0.2437 REMARK 3 T13: -0.1343 T23: 0.0995 REMARK 3 L TENSOR REMARK 3 L11: 2.5592 L22: 0.2726 REMARK 3 L33: 4.0115 L12: 0.8140 REMARK 3 L13: 0.2283 L23: -0.1730 REMARK 3 S TENSOR REMARK 3 S11: 0.1556 S12: -0.8594 S13: 0.1492 REMARK 3 S21: 0.8399 S22: -0.1512 S23: -0.6811 REMARK 3 S31: 0.2337 S32: 1.6871 S33: -0.0159 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN D AND RESID 9:12) REMARK 3 ORIGIN FOR THE GROUP (A): -3.8901 7.1164 23.1914 REMARK 3 T TENSOR REMARK 3 T11: 0.5100 T22: 0.5013 REMARK 3 T33: 0.3887 T12: 0.0154 REMARK 3 T13: 0.0210 T23: -0.0188 REMARK 3 L TENSOR REMARK 3 L11: 3.7566 L22: 3.4422 REMARK 3 L33: 9.3435 L12: -1.1330 REMARK 3 L13: -3.5391 L23: -0.8918 REMARK 3 S TENSOR REMARK 3 S11: 0.1638 S12: -0.2326 S13: 0.4878 REMARK 3 S21: 0.1981 S22: -0.0391 S23: -0.0483 REMARK 3 S31: -0.8158 S32: 0.1870 S33: -0.1361 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN E AND RESID 1:7) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9209 4.3834 12.8929 REMARK 3 T TENSOR REMARK 3 T11: 0.3338 T22: 1.0768 REMARK 3 T33: 0.4473 T12: -0.0193 REMARK 3 T13: -0.0247 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 4.8334 L22: 3.8317 REMARK 3 L33: 0.7116 L12: -1.5640 REMARK 3 L13: -1.8490 L23: 0.4664 REMARK 3 S TENSOR REMARK 3 S11: 0.3809 S12: -0.4391 S13: -0.1209 REMARK 3 S21: 0.0310 S22: 0.2143 S23: -1.3337 REMARK 3 S31: 0.0100 S32: 1.9171 S33: -0.3498 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN F AND RESID 1:7) REMARK 3 ORIGIN FOR THE GROUP (A): 0.3105 2.3977 22.6701 REMARK 3 T TENSOR REMARK 3 T11: 0.3324 T22: 0.4367 REMARK 3 T33: 0.2463 T12: 0.0260 REMARK 3 T13: -0.0074 T23: 0.0277 REMARK 3 L TENSOR REMARK 3 L11: 4.3327 L22: 2.2261 REMARK 3 L33: 8.7281 L12: 0.8222 REMARK 3 L13: -4.2505 L23: 1.2350 REMARK 3 S TENSOR REMARK 3 S11: -0.2364 S12: -0.8848 S13: -0.3602 REMARK 3 S21: 0.4411 S22: -0.0882 S23: -0.0333 REMARK 3 S31: 0.6720 S32: 0.6801 S33: 0.3577 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN G AND RESID 1:4) REMARK 3 ORIGIN FOR THE GROUP (A): -9.1531 38.6289 6.9857 REMARK 3 T TENSOR REMARK 3 T11: 0.8040 T22: 0.4224 REMARK 3 T33: 0.6837 T12: 0.1664 REMARK 3 T13: 0.0311 T23: -0.0614 REMARK 3 L TENSOR REMARK 3 L11: 3.9896 L22: 5.3533 REMARK 3 L33: 4.2062 L12: -0.8364 REMARK 3 L13: 1.0995 L23: -3.8790 REMARK 3 S TENSOR REMARK 3 S11: -0.1982 S12: -0.7676 S13: -0.8796 REMARK 3 S21: 0.7759 S22: 0.5093 S23: 0.1591 REMARK 3 S31: 0.8990 S32: 0.0705 S33: -0.2184 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN G AND RESID 5:8) REMARK 3 ORIGIN FOR THE GROUP (A): -8.6296 26.0138 -1.2978 REMARK 3 T TENSOR REMARK 3 T11: 1.3941 T22: -0.2295 REMARK 3 T33: 1.7998 T12: 0.5047 REMARK 3 T13: -0.2047 T23: -0.0540 REMARK 3 L TENSOR REMARK 3 L11: 0.1892 L22: 0.6030 REMARK 3 L33: 0.3462 L12: -0.1911 REMARK 3 L13: -0.0581 L23: 0.4244 REMARK 3 S TENSOR REMARK 3 S11: -0.3201 S12: 0.0846 S13: -0.4485 REMARK 3 S21: -0.4899 S22: -0.0829 S23: 0.2682 REMARK 3 S31: 0.8502 S32: -0.2421 S33: 0.2377 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN G AND RESID 9:12) REMARK 3 ORIGIN FOR THE GROUP (A): 3.6783 17.1044 2.8146 REMARK 3 T TENSOR REMARK 3 T11: 1.5175 T22: 0.4460 REMARK 3 T33: 1.0389 T12: 0.2103 REMARK 3 T13: 0.1501 T23: 0.2352 REMARK 3 L TENSOR REMARK 3 L11: 2.1199 L22: 4.4229 REMARK 3 L33: 2.7211 L12: -0.5122 REMARK 3 L13: 0.3316 L23: -2.9092 REMARK 3 S TENSOR REMARK 3 S11: 0.6891 S12: 0.3090 S13: -0.1571 REMARK 3 S21: -0.7668 S22: -0.8766 S23: -0.3255 REMARK 3 S31: 0.3394 S32: 0.9701 S33: 0.4313 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN H AND RESID 1:7) REMARK 3 ORIGIN FOR THE GROUP (A): -7.7108 37.0906 -1.0645 REMARK 3 T TENSOR REMARK 3 T11: 0.5863 T22: 0.0810 REMARK 3 T33: 1.0129 T12: 0.1977 REMARK 3 T13: 0.0702 T23: 0.0701 REMARK 3 L TENSOR REMARK 3 L11: 0.8801 L22: 2.7073 REMARK 3 L33: 1.9030 L12: -1.5179 REMARK 3 L13: 0.0204 L23: -0.2649 REMARK 3 S TENSOR REMARK 3 S11: 0.0098 S12: 0.2794 S13: -0.6765 REMARK 3 S21: -0.7527 S22: -0.3729 S23: -0.2498 REMARK 3 S31: 0.8250 S32: 0.3687 S33: 0.1336 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN I AND RESID 1:7) REMARK 3 ORIGIN FOR THE GROUP (A): -0.9310 22.0658 5.9982 REMARK 3 T TENSOR REMARK 3 T11: 1.2401 T22: 0.4574 REMARK 3 T33: 1.2070 T12: 0.1793 REMARK 3 T13: 0.0537 T23: -0.0252 REMARK 3 L TENSOR REMARK 3 L11: 2.9258 L22: 2.1473 REMARK 3 L33: 3.5650 L12: -2.2864 REMARK 3 L13: 1.5026 L23: -1.2422 REMARK 3 S TENSOR REMARK 3 S11: 0.3134 S12: -0.7662 S13: 0.1190 REMARK 3 S21: -0.1643 S22: -0.6426 S23: -0.1432 REMARK 3 S31: 0.2475 S32: 0.2168 S33: 0.2309 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7THB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1000260365. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.116 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : STARANISO 3.339 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24808 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.637 REMARK 200 RESOLUTION RANGE LOW (A) : 35.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 64.7 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.03700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.6410 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 5.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 35.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.02800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 44.80 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: SEE METHODS IN PRIMARY CITATION REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5 UL OF SAMPLE WAS COMBINED WITH 0.5 REMARK 280 UL RESERVOIR SOLUTION (0.05 M SODIUM SUCCINATE (PH 5.3), 0.5 MM REMARK 280 SPERMINE, 20 MM MAGNESIUM CHLORIDE, 2.6 M AMMONIUM SULFATE) OVER REMARK 280 500 UL RESERVOIR SOLUTION., VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 DBREF 7THB A 1 12 PDB 7THB 7THB 1 12 DBREF 7THB B 1 7 PDB 7THB 7THB 1 7 DBREF 7THB C 1 7 PDB 7THB 7THB 1 7 DBREF 7THB D 1 12 PDB 7THB 7THB 1 12 DBREF 7THB E 1 7 PDB 7THB 7THB 1 7 DBREF 7THB F 1 7 PDB 7THB 7THB 1 7 DBREF 7THB G 1 12 PDB 7THB 7THB 1 12 DBREF 7THB H 1 7 PDB 7THB 7THB 1 7 DBREF 7THB I 1 7 PDB 7THB 7THB 1 7 SEQRES 1 A 12 DG DT DA DA DG DC DA DG DC DA DT DC SEQRES 1 B 7 A G C U U A C SEQRES 1 C 7 DG DA DT DG DC DT DC SEQRES 1 D 12 DG DT DA DA DG DC DA DG DC DA DT DC SEQRES 1 E 7 A G C U U A C SEQRES 1 F 7 DG DA DT DG DC DT DC SEQRES 1 G 12 DG DT DA DA DG DC DA DG DC DA DT DC SEQRES 1 H 7 A G C U U A C SEQRES 1 I 7 DG DA DT DG DC DT DC FORMUL 10 HOH *67(H2 O) CRYST1 37.025 43.586 52.182 92.06 103.72 99.95 P 1 3 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027009 0.004739 0.006998 0.00000 SCALE2 0.000000 0.023294 0.001877 0.00000 SCALE3 0.000000 0.000000 0.019791 0.00000