data_7THE # _entry.id 7THE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.360 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7THE pdb_00007the 10.2210/pdb7the/pdb WWPDB D_1000262231 ? ? EMDB EMD-25893 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Structure of RBD directed antibody DH1042 in complex with SARS-CoV-2 spike: Local refinement of RBD-Fab interface' _pdbx_database_related.db_id EMD-25893 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7THE _pdbx_database_status.recvd_initial_deposition_date 2022-01-10 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'May, A.J.' 1 0000-0003-2262-9750 'Manne, K.' 2 0000-0002-7218-4852 'Acharya, P.' 3 0000-0002-0089-277X # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Mol.Cell _citation.journal_id_ASTM MOCEFL _citation.journal_id_CSD 2168 _citation.journal_id_ISSN 1097-2765 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 82 _citation.language ? _citation.page_first 2050 _citation.page_last 2068.e6 _citation.title 'Structural diversity of the SARS-CoV-2 Omicron spike.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.molcel.2022.03.028 _citation.pdbx_database_id_PubMed 35447081 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gobeil, S.M.' 1 ? primary 'Henderson, R.' 2 ? primary 'Stalls, V.' 3 ? primary 'Janowska, K.' 4 ? primary 'Huang, X.' 5 ? primary 'May, A.' 6 ? primary 'Speakman, M.' 7 ? primary 'Beaudoin, E.' 8 ? primary 'Manne, K.' 9 ? primary 'Li, D.' 10 ? primary 'Parks, R.' 11 ? primary 'Barr, M.' 12 ? primary 'Deyton, M.' 13 ? primary 'Martin, M.' 14 ? primary 'Mansouri, K.' 15 ? primary 'Edwards, R.J.' 16 ? primary 'Eaton, A.' 17 ? primary 'Montefiori, D.C.' 18 ? primary 'Sempowski, G.D.' 19 ? primary 'Saunders, K.O.' 20 ? primary 'Wiehe, K.' 21 ? primary 'Williams, W.' 22 ? primary 'Korber, B.' 23 ? primary 'Haynes, B.F.' 24 ? primary 'Acharya, P.' 25 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7THE _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7THE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Spike protein S1' 21873.496 1 ? ? 'receptor binding domain' ? 2 polymer man 'DH1042 Fab Heavy Chain' 13476.164 1 ? ? ? ? 3 polymer man 'DH1042 Fab Light Chain' 11431.628 1 ? ? ? ? 4 non-polymer syn 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAP GQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPL QSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGP ; ;TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAP GQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPL QSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGP ; A ? 2 'polypeptide(L)' no no ;QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGRIIPMFGIANYAQKFQGRVTITADKSTSTAY LELSSLRSEDTAVYYCARYMVTRDQYYYDMDVWGQGTTVTVS ; ;QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGRIIPMFGIANYAQKFQGRVTITADKSTSTAY LELSSLRSEDTAVYYCARYMVTRDQYYYDMDVWGQGTTVTVS ; B ? 3 'polypeptide(L)' no no ;DIQMTQSPSSLSASVGDRVTITCRASQSISNYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQP EDFATYYCQQSYSPPPTFGQGTKLEI ; ;DIQMTQSPSSLSASVGDRVTITCRASQSISNYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQP EDFATYYCQQSYSPPPTFGQGTKLEI ; C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 ASN n 1 3 LEU n 1 4 CYS n 1 5 PRO n 1 6 PHE n 1 7 GLY n 1 8 GLU n 1 9 VAL n 1 10 PHE n 1 11 ASN n 1 12 ALA n 1 13 THR n 1 14 ARG n 1 15 PHE n 1 16 ALA n 1 17 SER n 1 18 VAL n 1 19 TYR n 1 20 ALA n 1 21 TRP n 1 22 ASN n 1 23 ARG n 1 24 LYS n 1 25 ARG n 1 26 ILE n 1 27 SER n 1 28 ASN n 1 29 CYS n 1 30 VAL n 1 31 ALA n 1 32 ASP n 1 33 TYR n 1 34 SER n 1 35 VAL n 1 36 LEU n 1 37 TYR n 1 38 ASN n 1 39 SER n 1 40 ALA n 1 41 SER n 1 42 PHE n 1 43 SER n 1 44 THR n 1 45 PHE n 1 46 LYS n 1 47 CYS n 1 48 TYR n 1 49 GLY n 1 50 VAL n 1 51 SER n 1 52 PRO n 1 53 THR n 1 54 LYS n 1 55 LEU n 1 56 ASN n 1 57 ASP n 1 58 LEU n 1 59 CYS n 1 60 PHE n 1 61 THR n 1 62 ASN n 1 63 VAL n 1 64 TYR n 1 65 ALA n 1 66 ASP n 1 67 SER n 1 68 PHE n 1 69 VAL n 1 70 ILE n 1 71 ARG n 1 72 GLY n 1 73 ASP n 1 74 GLU n 1 75 VAL n 1 76 ARG n 1 77 GLN n 1 78 ILE n 1 79 ALA n 1 80 PRO n 1 81 GLY n 1 82 GLN n 1 83 THR n 1 84 GLY n 1 85 LYS n 1 86 ILE n 1 87 ALA n 1 88 ASP n 1 89 TYR n 1 90 ASN n 1 91 TYR n 1 92 LYS n 1 93 LEU n 1 94 PRO n 1 95 ASP n 1 96 ASP n 1 97 PHE n 1 98 THR n 1 99 GLY n 1 100 CYS n 1 101 VAL n 1 102 ILE n 1 103 ALA n 1 104 TRP n 1 105 ASN n 1 106 SER n 1 107 ASN n 1 108 ASN n 1 109 LEU n 1 110 ASP n 1 111 SER n 1 112 LYS n 1 113 VAL n 1 114 GLY n 1 115 GLY n 1 116 ASN n 1 117 TYR n 1 118 ASN n 1 119 TYR n 1 120 LEU n 1 121 TYR n 1 122 ARG n 1 123 LEU n 1 124 PHE n 1 125 ARG n 1 126 LYS n 1 127 SER n 1 128 ASN n 1 129 LEU n 1 130 LYS n 1 131 PRO n 1 132 PHE n 1 133 GLU n 1 134 ARG n 1 135 ASP n 1 136 ILE n 1 137 SER n 1 138 THR n 1 139 GLU n 1 140 ILE n 1 141 TYR n 1 142 GLN n 1 143 ALA n 1 144 GLY n 1 145 SER n 1 146 THR n 1 147 PRO n 1 148 CYS n 1 149 ASN n 1 150 GLY n 1 151 VAL n 1 152 GLU n 1 153 GLY n 1 154 PHE n 1 155 ASN n 1 156 CYS n 1 157 TYR n 1 158 PHE n 1 159 PRO n 1 160 LEU n 1 161 GLN n 1 162 SER n 1 163 TYR n 1 164 GLY n 1 165 PHE n 1 166 GLN n 1 167 PRO n 1 168 THR n 1 169 ASN n 1 170 GLY n 1 171 VAL n 1 172 GLY n 1 173 TYR n 1 174 GLN n 1 175 PRO n 1 176 TYR n 1 177 ARG n 1 178 VAL n 1 179 VAL n 1 180 VAL n 1 181 LEU n 1 182 SER n 1 183 PHE n 1 184 GLU n 1 185 LEU n 1 186 LEU n 1 187 HIS n 1 188 ALA n 1 189 PRO n 1 190 ALA n 1 191 THR n 1 192 VAL n 1 193 CYS n 1 194 GLY n 1 195 PRO n 2 1 GLN n 2 2 VAL n 2 3 GLN n 2 4 LEU n 2 5 VAL n 2 6 GLN n 2 7 SER n 2 8 GLY n 2 9 ALA n 2 10 GLU n 2 11 VAL n 2 12 LYS n 2 13 LYS n 2 14 PRO n 2 15 GLY n 2 16 SER n 2 17 SER n 2 18 VAL n 2 19 LYS n 2 20 VAL n 2 21 SER n 2 22 CYS n 2 23 LYS n 2 24 ALA n 2 25 SER n 2 26 GLY n 2 27 GLY n 2 28 THR n 2 29 PHE n 2 30 SER n 2 31 SER n 2 32 TYR n 2 33 ALA n 2 34 ILE n 2 35 SER n 2 36 TRP n 2 37 VAL n 2 38 ARG n 2 39 GLN n 2 40 ALA n 2 41 PRO n 2 42 GLY n 2 43 GLN n 2 44 GLY n 2 45 LEU n 2 46 GLU n 2 47 TRP n 2 48 MET n 2 49 GLY n 2 50 ARG n 2 51 ILE n 2 52 ILE n 2 53 PRO n 2 54 MET n 2 55 PHE n 2 56 GLY n 2 57 ILE n 2 58 ALA n 2 59 ASN n 2 60 TYR n 2 61 ALA n 2 62 GLN n 2 63 LYS n 2 64 PHE n 2 65 GLN n 2 66 GLY n 2 67 ARG n 2 68 VAL n 2 69 THR n 2 70 ILE n 2 71 THR n 2 72 ALA n 2 73 ASP n 2 74 LYS n 2 75 SER n 2 76 THR n 2 77 SER n 2 78 THR n 2 79 ALA n 2 80 TYR n 2 81 LEU n 2 82 GLU n 2 83 LEU n 2 84 SER n 2 85 SER n 2 86 LEU n 2 87 ARG n 2 88 SER n 2 89 GLU n 2 90 ASP n 2 91 THR n 2 92 ALA n 2 93 VAL n 2 94 TYR n 2 95 TYR n 2 96 CYS n 2 97 ALA n 2 98 ARG n 2 99 TYR n 2 100 MET n 2 101 VAL n 2 102 THR n 2 103 ARG n 2 104 ASP n 2 105 GLN n 2 106 TYR n 2 107 TYR n 2 108 TYR n 2 109 ASP n 2 110 MET n 2 111 ASP n 2 112 VAL n 2 113 TRP n 2 114 GLY n 2 115 GLN n 2 116 GLY n 2 117 THR n 2 118 THR n 2 119 VAL n 2 120 THR n 2 121 VAL n 2 122 SER n 3 1 ASP n 3 2 ILE n 3 3 GLN n 3 4 MET n 3 5 THR n 3 6 GLN n 3 7 SER n 3 8 PRO n 3 9 SER n 3 10 SER n 3 11 LEU n 3 12 SER n 3 13 ALA n 3 14 SER n 3 15 VAL n 3 16 GLY n 3 17 ASP n 3 18 ARG n 3 19 VAL n 3 20 THR n 3 21 ILE n 3 22 THR n 3 23 CYS n 3 24 ARG n 3 25 ALA n 3 26 SER n 3 27 GLN n 3 28 SER n 3 29 ILE n 3 30 SER n 3 31 ASN n 3 32 TYR n 3 33 LEU n 3 34 ASN n 3 35 TRP n 3 36 TYR n 3 37 GLN n 3 38 GLN n 3 39 LYS n 3 40 PRO n 3 41 GLY n 3 42 LYS n 3 43 ALA n 3 44 PRO n 3 45 LYS n 3 46 LEU n 3 47 LEU n 3 48 ILE n 3 49 TYR n 3 50 ALA n 3 51 ALA n 3 52 SER n 3 53 SER n 3 54 LEU n 3 55 GLN n 3 56 SER n 3 57 GLY n 3 58 VAL n 3 59 PRO n 3 60 SER n 3 61 ARG n 3 62 PHE n 3 63 SER n 3 64 GLY n 3 65 SER n 3 66 GLY n 3 67 SER n 3 68 GLY n 3 69 THR n 3 70 ASP n 3 71 PHE n 3 72 THR n 3 73 LEU n 3 74 THR n 3 75 ILE n 3 76 SER n 3 77 SER n 3 78 LEU n 3 79 GLN n 3 80 PRO n 3 81 GLU n 3 82 ASP n 3 83 PHE n 3 84 ALA n 3 85 THR n 3 86 TYR n 3 87 TYR n 3 88 CYS n 3 89 GLN n 3 90 GLN n 3 91 SER n 3 92 TYR n 3 93 SER n 3 94 PRO n 3 95 PRO n 3 96 PRO n 3 97 THR n 3 98 PHE n 3 99 GLY n 3 100 GLN n 3 101 GLY n 3 102 THR n 3 103 LYS n 3 104 LEU n 3 105 GLU n 3 106 ILE n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 195 ? ? 'S, 2' ? ? ? ? ? ? 'Severe acute respiratory syndrome coronavirus 2' 2697049 ? ? ? ? ? ? ? human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 122 human ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample 'Biological sequence' 1 106 Human ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP SPIKE_SARS2 P0DTC2 ? 1 ;TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAP GQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPL QSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGP ; 333 2 PDB 7THE 7THE ? 2 ? 1 3 PDB 7THE 7THE ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7THE A 1 ? 195 ? P0DTC2 333 ? 527 ? 333 527 2 2 7THE B 1 ? 122 ? 7THE 1 ? 112 ? 1 112 3 3 7THE C 1 ? 106 ? 7THE 1 ? 106 ? 1 106 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7THE _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 92.19 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7THE _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high . _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method NONE _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.0130 ? 3388 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 1.8802 ? 4605 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.1055 ? 499 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.0152 ? 594 ? f_plane_restr ? ? 'ELECTRON MICROSCOPY' ? 13.7019 ? 1211 ? f_dihedral_angle_d ? ? # _struct.entry_id 7THE _struct.title 'Structure of RBD directed antibody DH1042 in complex with SARS-CoV-2 spike: Local refinement of RBD-Fab interface' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7THE _struct_keywords.text 'RBD, Fab, VIRAL PROTEIN, VIRAL PROTEIN-IMMUNE SYSTEM complex' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN/IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PRO A 5 ? PHE A 10 ? PRO A 337 PHE A 342 1 ? 6 HELX_P HELX_P2 AA2 SER A 17 ? TRP A 21 ? SER A 349 TRP A 353 5 ? 5 HELX_P HELX_P3 AA3 ASP A 32 ? ASN A 38 ? ASP A 364 ASN A 370 1 ? 7 HELX_P HELX_P4 AA4 SER A 51 ? ASP A 57 ? SER A 383 ASP A 389 5 ? 7 HELX_P HELX_P5 AA5 ASP A 73 ? ALA A 79 ? ASP A 405 ALA A 411 5 ? 7 HELX_P HELX_P6 AA6 GLY A 84 ? ASN A 90 ? GLY A 416 ASN A 422 1 ? 7 HELX_P HELX_P7 AA7 SER A 106 ? SER A 111 ? SER A 438 SER A 443 1 ? 6 HELX_P HELX_P8 AA8 LYS B 74 ? THR B 76 ? LYS B 73 THR B 75 5 ? 3 HELX_P HELX_P9 AA9 GLN C 79 ? PHE C 83 ? GLN C 79 PHE C 83 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 4 SG ? ? ? 1_555 A CYS 29 SG ? ? A CYS 336 A CYS 361 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf2 disulf ? ? A CYS 47 SG ? ? ? 1_555 A CYS 100 SG ? ? A CYS 379 A CYS 432 1_555 ? ? ? ? ? ? ? 2.030 ? ? disulf3 disulf ? ? A CYS 59 SG ? ? ? 1_555 A CYS 193 SG ? ? A CYS 391 A CYS 525 1_555 ? ? ? ? ? ? ? 2.034 ? ? disulf4 disulf ? ? A CYS 148 SG ? ? ? 1_555 A CYS 156 SG ? ? A CYS 480 A CYS 488 1_555 ? ? ? ? ? ? ? 2.035 ? ? disulf5 disulf ? ? B CYS 22 SG ? ? ? 1_555 B CYS 96 SG ? ? B CYS 22 B CYS 92 1_555 ? ? ? ? ? ? ? 2.005 ? ? disulf6 disulf ? ? C CYS 23 SG ? ? ? 1_555 C CYS 88 SG ? ? C CYS 23 C CYS 88 1_555 ? ? ? ? ? ? ? 2.032 ? ? covale1 covale one ? A ASN 11 ND2 ? ? ? 1_555 D NAG . C1 ? ? A ASN 343 A NAG 601 1_555 ? ? ? ? ? ? ? 1.458 ? N-Glycosylation # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 7 C . ? SER 7 C PRO 8 C ? PRO 8 C 1 -10.85 2 PRO 94 C . ? PRO 94 C PRO 95 C ? PRO 95 C 1 -11.14 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 5 ? AA3 ? 2 ? AA4 ? 2 ? AA5 ? 4 ? AA6 ? 6 ? AA7 ? 4 ? AA8 ? 4 ? AA9 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel AA5 3 4 ? anti-parallel AA6 1 2 ? parallel AA6 2 3 ? anti-parallel AA6 3 4 ? anti-parallel AA6 4 5 ? anti-parallel AA6 5 6 ? anti-parallel AA7 1 2 ? parallel AA7 2 3 ? anti-parallel AA7 3 4 ? anti-parallel AA8 1 2 ? anti-parallel AA8 2 3 ? anti-parallel AA8 3 4 ? anti-parallel AA9 1 2 ? parallel AA9 2 3 ? anti-parallel AA9 3 4 ? anti-parallel AA9 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ASN A 2 ? LEU A 3 ? ASN A 334 LEU A 335 AA1 2 CYS A 29 ? VAL A 30 ? CYS A 361 VAL A 362 AA1 3 VAL A 192 ? CYS A 193 ? VAL A 524 CYS A 525 AA1 4 CYS A 59 ? PHE A 60 ? CYS A 391 PHE A 392 AA2 1 ASN A 22 ? ILE A 26 ? ASN A 354 ILE A 358 AA2 2 ASN A 62 ? ARG A 71 ? ASN A 394 ARG A 403 AA2 3 PRO A 175 ? GLU A 184 ? PRO A 507 GLU A 516 AA2 4 GLY A 99 ? ASN A 105 ? GLY A 431 ASN A 437 AA2 5 THR A 44 ? TYR A 48 ? THR A 376 TYR A 380 AA3 1 LEU A 120 ? ARG A 122 ? LEU A 452 ARG A 454 AA3 2 LEU A 160 ? SER A 162 ? LEU A 492 SER A 494 AA4 1 TYR A 141 ? GLN A 142 ? TYR A 473 GLN A 474 AA4 2 CYS A 156 ? TYR A 157 ? CYS A 488 TYR A 489 AA5 1 GLN B 3 ? GLN B 6 ? GLN B 3 GLN B 6 AA5 2 VAL B 18 ? SER B 25 ? VAL B 18 SER B 25 AA5 3 THR B 78 ? LEU B 83 ? THR B 77 LEU B 82 AA5 4 VAL B 68 ? ASP B 73 ? VAL B 67 ASP B 72 AA6 1 GLU B 10 ? VAL B 11 ? GLU B 10 VAL B 11 AA6 2 THR B 117 ? THR B 120 ? THR B 107 THR B 110 AA6 3 VAL B 93 ? TYR B 99 ? VAL B 89 TYR B 95 AA6 4 ALA B 33 ? GLN B 39 ? ALA B 33 GLN B 39 AA6 5 LEU B 45 ? ILE B 51 ? LEU B 45 ILE B 51 AA6 6 ALA B 58 ? TYR B 60 ? ALA B 57 TYR B 59 AA7 1 GLU B 10 ? VAL B 11 ? GLU B 10 VAL B 11 AA7 2 THR B 117 ? THR B 120 ? THR B 107 THR B 110 AA7 3 VAL B 93 ? TYR B 99 ? VAL B 89 TYR B 95 AA7 4 VAL B 112 ? TRP B 113 ? VAL B 102 TRP B 103 AA8 1 MET C 4 ? SER C 7 ? MET C 4 SER C 7 AA8 2 ARG C 18 ? ALA C 25 ? ARG C 18 ALA C 25 AA8 3 PHE C 71 ? SER C 76 ? PHE C 71 SER C 76 AA8 4 PHE C 62 ? SER C 65 ? PHE C 62 SER C 65 AA9 1 SER C 10 ? SER C 12 ? SER C 10 SER C 12 AA9 2 THR C 102 ? GLU C 105 ? THR C 102 GLU C 105 AA9 3 THR C 85 ? GLN C 90 ? THR C 85 GLN C 90 AA9 4 LEU C 33 ? GLN C 38 ? LEU C 33 GLN C 38 AA9 5 LYS C 45 ? ILE C 48 ? LYS C 45 ILE C 48 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ASN A 2 ? N ASN A 334 O VAL A 30 ? O VAL A 362 AA1 2 3 N CYS A 29 ? N CYS A 361 O CYS A 193 ? O CYS A 525 AA1 3 4 O VAL A 192 ? O VAL A 524 N PHE A 60 ? N PHE A 392 AA2 1 2 N LYS A 24 ? N LYS A 356 O ALA A 65 ? O ALA A 397 AA2 2 3 N ILE A 70 ? N ILE A 402 O TYR A 176 ? O TYR A 508 AA2 3 4 O VAL A 179 ? O VAL A 511 N ILE A 102 ? N ILE A 434 AA2 4 5 O GLY A 99 ? O GLY A 431 N TYR A 48 ? N TYR A 380 AA3 1 2 N TYR A 121 ? N TYR A 453 O GLN A 161 ? O GLN A 493 AA4 1 2 N TYR A 141 ? N TYR A 473 O TYR A 157 ? O TYR A 489 AA5 1 2 N VAL B 5 ? N VAL B 5 O LYS B 23 ? O LYS B 23 AA5 2 3 N CYS B 22 ? N CYS B 22 O ALA B 79 ? O ALA B 78 AA5 3 4 O TYR B 80 ? O TYR B 79 N THR B 71 ? N THR B 70 AA6 1 2 N GLU B 10 ? N GLU B 10 O THR B 120 ? O THR B 110 AA6 2 3 O THR B 117 ? O THR B 107 N TYR B 94 ? N TYR B 90 AA6 3 4 O VAL B 93 ? O VAL B 89 N GLN B 39 ? N GLN B 39 AA6 4 5 N TRP B 36 ? N TRP B 36 O MET B 48 ? O MET B 48 AA6 5 6 N ARG B 50 ? N ARG B 50 O ASN B 59 ? O ASN B 58 AA7 1 2 N GLU B 10 ? N GLU B 10 O THR B 120 ? O THR B 110 AA7 2 3 O THR B 117 ? O THR B 107 N TYR B 94 ? N TYR B 90 AA7 3 4 N ARG B 98 ? N ARG B 94 O VAL B 112 ? O VAL B 102 AA8 1 2 N THR C 5 ? N THR C 5 O ARG C 24 ? O ARG C 24 AA8 2 3 N VAL C 19 ? N VAL C 19 O ILE C 75 ? O ILE C 75 AA8 3 4 O THR C 74 ? O THR C 74 N SER C 63 ? N SER C 63 AA9 1 2 N LEU C 11 ? N LEU C 11 O GLU C 105 ? O GLU C 105 AA9 2 3 O THR C 102 ? O THR C 102 N TYR C 86 ? N TYR C 86 AA9 3 4 O TYR C 87 ? O TYR C 87 N TYR C 36 ? N TYR C 36 AA9 4 5 N TRP C 35 ? N TRP C 35 O LEU C 47 ? O LEU C 47 # _atom_sites.entry_id 7THE _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 333 333 THR THR A . n A 1 2 ASN 2 334 334 ASN ASN A . n A 1 3 LEU 3 335 335 LEU LEU A . n A 1 4 CYS 4 336 336 CYS CYS A . n A 1 5 PRO 5 337 337 PRO PRO A . n A 1 6 PHE 6 338 338 PHE PHE A . n A 1 7 GLY 7 339 339 GLY GLY A . n A 1 8 GLU 8 340 340 GLU GLU A . n A 1 9 VAL 9 341 341 VAL VAL A . n A 1 10 PHE 10 342 342 PHE PHE A . n A 1 11 ASN 11 343 343 ASN ASN A . n A 1 12 ALA 12 344 344 ALA ALA A . n A 1 13 THR 13 345 345 THR THR A . n A 1 14 ARG 14 346 346 ARG ARG A . n A 1 15 PHE 15 347 347 PHE PHE A . n A 1 16 ALA 16 348 348 ALA ALA A . n A 1 17 SER 17 349 349 SER SER A . n A 1 18 VAL 18 350 350 VAL VAL A . n A 1 19 TYR 19 351 351 TYR TYR A . n A 1 20 ALA 20 352 352 ALA ALA A . n A 1 21 TRP 21 353 353 TRP TRP A . n A 1 22 ASN 22 354 354 ASN ASN A . n A 1 23 ARG 23 355 355 ARG ARG A . n A 1 24 LYS 24 356 356 LYS LYS A . n A 1 25 ARG 25 357 357 ARG ARG A . n A 1 26 ILE 26 358 358 ILE ILE A . n A 1 27 SER 27 359 359 SER SER A . n A 1 28 ASN 28 360 360 ASN ASN A . n A 1 29 CYS 29 361 361 CYS CYS A . n A 1 30 VAL 30 362 362 VAL VAL A . n A 1 31 ALA 31 363 363 ALA ALA A . n A 1 32 ASP 32 364 364 ASP ASP A . n A 1 33 TYR 33 365 365 TYR TYR A . n A 1 34 SER 34 366 366 SER SER A . n A 1 35 VAL 35 367 367 VAL VAL A . n A 1 36 LEU 36 368 368 LEU LEU A . n A 1 37 TYR 37 369 369 TYR TYR A . n A 1 38 ASN 38 370 370 ASN ASN A . n A 1 39 SER 39 371 371 SER SER A . n A 1 40 ALA 40 372 372 ALA ALA A . n A 1 41 SER 41 373 373 SER SER A . n A 1 42 PHE 42 374 374 PHE PHE A . n A 1 43 SER 43 375 375 SER SER A . n A 1 44 THR 44 376 376 THR THR A . n A 1 45 PHE 45 377 377 PHE PHE A . n A 1 46 LYS 46 378 378 LYS LYS A . n A 1 47 CYS 47 379 379 CYS CYS A . n A 1 48 TYR 48 380 380 TYR TYR A . n A 1 49 GLY 49 381 381 GLY GLY A . n A 1 50 VAL 50 382 382 VAL VAL A . n A 1 51 SER 51 383 383 SER SER A . n A 1 52 PRO 52 384 384 PRO PRO A . n A 1 53 THR 53 385 385 THR THR A . n A 1 54 LYS 54 386 386 LYS LYS A . n A 1 55 LEU 55 387 387 LEU LEU A . n A 1 56 ASN 56 388 388 ASN ASN A . n A 1 57 ASP 57 389 389 ASP ASP A . n A 1 58 LEU 58 390 390 LEU LEU A . n A 1 59 CYS 59 391 391 CYS CYS A . n A 1 60 PHE 60 392 392 PHE PHE A . n A 1 61 THR 61 393 393 THR THR A . n A 1 62 ASN 62 394 394 ASN ASN A . n A 1 63 VAL 63 395 395 VAL VAL A . n A 1 64 TYR 64 396 396 TYR TYR A . n A 1 65 ALA 65 397 397 ALA ALA A . n A 1 66 ASP 66 398 398 ASP ASP A . n A 1 67 SER 67 399 399 SER SER A . n A 1 68 PHE 68 400 400 PHE PHE A . n A 1 69 VAL 69 401 401 VAL VAL A . n A 1 70 ILE 70 402 402 ILE ILE A . n A 1 71 ARG 71 403 403 ARG ARG A . n A 1 72 GLY 72 404 404 GLY GLY A . n A 1 73 ASP 73 405 405 ASP ASP A . n A 1 74 GLU 74 406 406 GLU GLU A . n A 1 75 VAL 75 407 407 VAL VAL A . n A 1 76 ARG 76 408 408 ARG ARG A . n A 1 77 GLN 77 409 409 GLN GLN A . n A 1 78 ILE 78 410 410 ILE ILE A . n A 1 79 ALA 79 411 411 ALA ALA A . n A 1 80 PRO 80 412 412 PRO PRO A . n A 1 81 GLY 81 413 413 GLY GLY A . n A 1 82 GLN 82 414 414 GLN GLN A . n A 1 83 THR 83 415 415 THR THR A . n A 1 84 GLY 84 416 416 GLY GLY A . n A 1 85 LYS 85 417 417 LYS LYS A . n A 1 86 ILE 86 418 418 ILE ILE A . n A 1 87 ALA 87 419 419 ALA ALA A . n A 1 88 ASP 88 420 420 ASP ASP A . n A 1 89 TYR 89 421 421 TYR TYR A . n A 1 90 ASN 90 422 422 ASN ASN A . n A 1 91 TYR 91 423 423 TYR TYR A . n A 1 92 LYS 92 424 424 LYS LYS A . n A 1 93 LEU 93 425 425 LEU LEU A . n A 1 94 PRO 94 426 426 PRO PRO A . n A 1 95 ASP 95 427 427 ASP ASP A . n A 1 96 ASP 96 428 428 ASP ASP A . n A 1 97 PHE 97 429 429 PHE PHE A . n A 1 98 THR 98 430 430 THR THR A . n A 1 99 GLY 99 431 431 GLY GLY A . n A 1 100 CYS 100 432 432 CYS CYS A . n A 1 101 VAL 101 433 433 VAL VAL A . n A 1 102 ILE 102 434 434 ILE ILE A . n A 1 103 ALA 103 435 435 ALA ALA A . n A 1 104 TRP 104 436 436 TRP TRP A . n A 1 105 ASN 105 437 437 ASN ASN A . n A 1 106 SER 106 438 438 SER SER A . n A 1 107 ASN 107 439 439 ASN ASN A . n A 1 108 ASN 108 440 440 ASN ASN A . n A 1 109 LEU 109 441 441 LEU LEU A . n A 1 110 ASP 110 442 442 ASP ASP A . n A 1 111 SER 111 443 443 SER SER A . n A 1 112 LYS 112 444 444 LYS LYS A . n A 1 113 VAL 113 445 445 VAL VAL A . n A 1 114 GLY 114 446 446 GLY GLY A . n A 1 115 GLY 115 447 447 GLY GLY A . n A 1 116 ASN 116 448 448 ASN ASN A . n A 1 117 TYR 117 449 449 TYR TYR A . n A 1 118 ASN 118 450 450 ASN ASN A . n A 1 119 TYR 119 451 451 TYR TYR A . n A 1 120 LEU 120 452 452 LEU LEU A . n A 1 121 TYR 121 453 453 TYR TYR A . n A 1 122 ARG 122 454 454 ARG ARG A . n A 1 123 LEU 123 455 455 LEU LEU A . n A 1 124 PHE 124 456 456 PHE PHE A . n A 1 125 ARG 125 457 457 ARG ARG A . n A 1 126 LYS 126 458 458 LYS LYS A . n A 1 127 SER 127 459 459 SER SER A . n A 1 128 ASN 128 460 460 ASN ASN A . n A 1 129 LEU 129 461 461 LEU LEU A . n A 1 130 LYS 130 462 462 LYS LYS A . n A 1 131 PRO 131 463 463 PRO PRO A . n A 1 132 PHE 132 464 464 PHE PHE A . n A 1 133 GLU 133 465 465 GLU GLU A . n A 1 134 ARG 134 466 466 ARG ARG A . n A 1 135 ASP 135 467 467 ASP ASP A . n A 1 136 ILE 136 468 468 ILE ILE A . n A 1 137 SER 137 469 469 SER SER A . n A 1 138 THR 138 470 470 THR THR A . n A 1 139 GLU 139 471 471 GLU GLU A . n A 1 140 ILE 140 472 472 ILE ILE A . n A 1 141 TYR 141 473 473 TYR TYR A . n A 1 142 GLN 142 474 474 GLN GLN A . n A 1 143 ALA 143 475 475 ALA ALA A . n A 1 144 GLY 144 476 476 GLY GLY A . n A 1 145 SER 145 477 477 SER SER A . n A 1 146 THR 146 478 478 THR THR A . n A 1 147 PRO 147 479 479 PRO PRO A . n A 1 148 CYS 148 480 480 CYS CYS A . n A 1 149 ASN 149 481 481 ASN ASN A . n A 1 150 GLY 150 482 482 GLY GLY A . n A 1 151 VAL 151 483 483 VAL VAL A . n A 1 152 GLU 152 484 484 GLU GLU A . n A 1 153 GLY 153 485 485 GLY GLY A . n A 1 154 PHE 154 486 486 PHE PHE A . n A 1 155 ASN 155 487 487 ASN ASN A . n A 1 156 CYS 156 488 488 CYS CYS A . n A 1 157 TYR 157 489 489 TYR TYR A . n A 1 158 PHE 158 490 490 PHE PHE A . n A 1 159 PRO 159 491 491 PRO PRO A . n A 1 160 LEU 160 492 492 LEU LEU A . n A 1 161 GLN 161 493 493 GLN GLN A . n A 1 162 SER 162 494 494 SER SER A . n A 1 163 TYR 163 495 495 TYR TYR A . n A 1 164 GLY 164 496 496 GLY GLY A . n A 1 165 PHE 165 497 497 PHE PHE A . n A 1 166 GLN 166 498 498 GLN GLN A . n A 1 167 PRO 167 499 499 PRO PRO A . n A 1 168 THR 168 500 500 THR THR A . n A 1 169 ASN 169 501 501 ASN ASN A . n A 1 170 GLY 170 502 502 GLY GLY A . n A 1 171 VAL 171 503 503 VAL VAL A . n A 1 172 GLY 172 504 504 GLY GLY A . n A 1 173 TYR 173 505 505 TYR TYR A . n A 1 174 GLN 174 506 506 GLN GLN A . n A 1 175 PRO 175 507 507 PRO PRO A . n A 1 176 TYR 176 508 508 TYR TYR A . n A 1 177 ARG 177 509 509 ARG ARG A . n A 1 178 VAL 178 510 510 VAL VAL A . n A 1 179 VAL 179 511 511 VAL VAL A . n A 1 180 VAL 180 512 512 VAL VAL A . n A 1 181 LEU 181 513 513 LEU LEU A . n A 1 182 SER 182 514 514 SER SER A . n A 1 183 PHE 183 515 515 PHE PHE A . n A 1 184 GLU 184 516 516 GLU GLU A . n A 1 185 LEU 185 517 517 LEU LEU A . n A 1 186 LEU 186 518 518 LEU LEU A . n A 1 187 HIS 187 519 519 HIS HIS A . n A 1 188 ALA 188 520 520 ALA ALA A . n A 1 189 PRO 189 521 521 PRO PRO A . n A 1 190 ALA 190 522 522 ALA ALA A . n A 1 191 THR 191 523 523 THR THR A . n A 1 192 VAL 192 524 524 VAL VAL A . n A 1 193 CYS 193 525 525 CYS CYS A . n A 1 194 GLY 194 526 526 GLY GLY A . n A 1 195 PRO 195 527 527 PRO PRO A . n B 2 1 GLN 1 1 1 GLN GLN B . n B 2 2 VAL 2 2 2 VAL VAL B . n B 2 3 GLN 3 3 3 GLN GLN B . n B 2 4 LEU 4 4 4 LEU LEU B . n B 2 5 VAL 5 5 5 VAL VAL B . n B 2 6 GLN 6 6 6 GLN GLN B . n B 2 7 SER 7 7 7 SER SER B . n B 2 8 GLY 8 8 8 GLY GLY B . n B 2 9 ALA 9 9 9 ALA ALA B . n B 2 10 GLU 10 10 10 GLU GLU B . n B 2 11 VAL 11 11 11 VAL VAL B . n B 2 12 LYS 12 12 12 LYS LYS B . n B 2 13 LYS 13 13 13 LYS LYS B . n B 2 14 PRO 14 14 14 PRO PRO B . n B 2 15 GLY 15 15 15 GLY GLY B . n B 2 16 SER 16 16 16 SER SER B . n B 2 17 SER 17 17 17 SER SER B . n B 2 18 VAL 18 18 18 VAL VAL B . n B 2 19 LYS 19 19 19 LYS LYS B . n B 2 20 VAL 20 20 20 VAL VAL B . n B 2 21 SER 21 21 21 SER SER B . n B 2 22 CYS 22 22 22 CYS CYS B . n B 2 23 LYS 23 23 23 LYS LYS B . n B 2 24 ALA 24 24 24 ALA ALA B . n B 2 25 SER 25 25 25 SER SER B . n B 2 26 GLY 26 26 26 GLY GLY B . n B 2 27 GLY 27 27 27 GLY GLY B . n B 2 28 THR 28 28 28 THR THR B . n B 2 29 PHE 29 29 29 PHE PHE B . n B 2 30 SER 30 30 30 SER SER B . n B 2 31 SER 31 31 31 SER SER B . n B 2 32 TYR 32 32 32 TYR TYR B . n B 2 33 ALA 33 33 33 ALA ALA B . n B 2 34 ILE 34 34 34 ILE ILE B . n B 2 35 SER 35 35 35 SER SER B . n B 2 36 TRP 36 36 36 TRP TRP B . n B 2 37 VAL 37 37 37 VAL VAL B . n B 2 38 ARG 38 38 38 ARG ARG B . n B 2 39 GLN 39 39 39 GLN GLN B . n B 2 40 ALA 40 40 40 ALA ALA B . n B 2 41 PRO 41 41 41 PRO PRO B . n B 2 42 GLY 42 42 42 GLY GLY B . n B 2 43 GLN 43 43 43 GLN GLN B . n B 2 44 GLY 44 44 44 GLY GLY B . n B 2 45 LEU 45 45 45 LEU LEU B . n B 2 46 GLU 46 46 46 GLU GLU B . n B 2 47 TRP 47 47 47 TRP TRP B . n B 2 48 MET 48 48 48 MET MET B . n B 2 49 GLY 49 49 49 GLY GLY B . n B 2 50 ARG 50 50 50 ARG ARG B . n B 2 51 ILE 51 51 51 ILE ILE B . n B 2 52 ILE 52 52 52 ILE ILE B . n B 2 53 PRO 53 52 52 PRO PRO B A n B 2 54 MET 54 53 53 MET MET B . n B 2 55 PHE 55 54 54 PHE PHE B . n B 2 56 GLY 56 55 55 GLY GLY B . n B 2 57 ILE 57 56 56 ILE ILE B . n B 2 58 ALA 58 57 57 ALA ALA B . n B 2 59 ASN 59 58 58 ASN ASN B . n B 2 60 TYR 60 59 59 TYR TYR B . n B 2 61 ALA 61 60 60 ALA ALA B . n B 2 62 GLN 62 61 61 GLN GLN B . n B 2 63 LYS 63 62 62 LYS LYS B . n B 2 64 PHE 64 63 63 PHE PHE B . n B 2 65 GLN 65 64 64 GLN GLN B . n B 2 66 GLY 66 65 65 GLY GLY B . n B 2 67 ARG 67 66 66 ARG ARG B . n B 2 68 VAL 68 67 67 VAL VAL B . n B 2 69 THR 69 68 68 THR THR B . n B 2 70 ILE 70 69 69 ILE ILE B . n B 2 71 THR 71 70 70 THR THR B . n B 2 72 ALA 72 71 71 ALA ALA B . n B 2 73 ASP 73 72 72 ASP ASP B . n B 2 74 LYS 74 73 73 LYS LYS B . n B 2 75 SER 75 74 74 SER SER B . n B 2 76 THR 76 75 75 THR THR B . n B 2 77 SER 77 76 76 SER SER B . n B 2 78 THR 78 77 77 THR THR B . n B 2 79 ALA 79 78 78 ALA ALA B . n B 2 80 TYR 80 79 79 TYR TYR B . n B 2 81 LEU 81 80 80 LEU LEU B . n B 2 82 GLU 82 81 81 GLU GLU B . n B 2 83 LEU 83 82 82 LEU LEU B . n B 2 84 SER 84 82 82 SER SER B A n B 2 85 SER 85 82 82 SER SER B B n B 2 86 LEU 86 82 82 LEU LEU B C n B 2 87 ARG 87 83 83 ARG ARG B . n B 2 88 SER 88 84 84 SER SER B . n B 2 89 GLU 89 85 85 GLU GLU B . n B 2 90 ASP 90 86 86 ASP ASP B . n B 2 91 THR 91 87 87 THR THR B . n B 2 92 ALA 92 88 88 ALA ALA B . n B 2 93 VAL 93 89 89 VAL VAL B . n B 2 94 TYR 94 90 90 TYR TYR B . n B 2 95 TYR 95 91 91 TYR TYR B . n B 2 96 CYS 96 92 92 CYS CYS B . n B 2 97 ALA 97 93 93 ALA ALA B . n B 2 98 ARG 98 94 94 ARG ARG B . n B 2 99 TYR 99 95 95 TYR TYR B . n B 2 100 MET 100 96 96 MET MET B . n B 2 101 VAL 101 97 97 VAL VAL B . n B 2 102 THR 102 98 98 THR THR B . n B 2 103 ARG 103 99 99 ARG ARG B . n B 2 104 ASP 104 100 100 ASP ASP B . n B 2 105 GLN 105 100 100 GLN GLN B A n B 2 106 TYR 106 100 100 TYR TYR B B n B 2 107 TYR 107 100 100 TYR TYR B C n B 2 108 TYR 108 100 100 TYR TYR B D n B 2 109 ASP 109 100 100 ASP ASP B E n B 2 110 MET 110 100 100 MET MET B F n B 2 111 ASP 111 101 101 ASP ASP B . n B 2 112 VAL 112 102 102 VAL VAL B . n B 2 113 TRP 113 103 103 TRP TRP B . n B 2 114 GLY 114 104 104 GLY GLY B . n B 2 115 GLN 115 105 105 GLN GLN B . n B 2 116 GLY 116 106 106 GLY GLY B . n B 2 117 THR 117 107 107 THR THR B . n B 2 118 THR 118 108 108 THR THR B . n B 2 119 VAL 119 109 109 VAL VAL B . n B 2 120 THR 120 110 110 THR THR B . n B 2 121 VAL 121 111 111 VAL VAL B . n B 2 122 SER 122 112 112 SER SER B . n C 3 1 ASP 1 1 1 ASP ASP C . n C 3 2 ILE 2 2 2 ILE ILE C . n C 3 3 GLN 3 3 3 GLN GLN C . n C 3 4 MET 4 4 4 MET MET C . n C 3 5 THR 5 5 5 THR THR C . n C 3 6 GLN 6 6 6 GLN GLN C . n C 3 7 SER 7 7 7 SER SER C . n C 3 8 PRO 8 8 8 PRO PRO C . n C 3 9 SER 9 9 9 SER SER C . n C 3 10 SER 10 10 10 SER SER C . n C 3 11 LEU 11 11 11 LEU LEU C . n C 3 12 SER 12 12 12 SER SER C . n C 3 13 ALA 13 13 13 ALA ALA C . n C 3 14 SER 14 14 14 SER SER C . n C 3 15 VAL 15 15 15 VAL VAL C . n C 3 16 GLY 16 16 16 GLY GLY C . n C 3 17 ASP 17 17 17 ASP ASP C . n C 3 18 ARG 18 18 18 ARG ARG C . n C 3 19 VAL 19 19 19 VAL VAL C . n C 3 20 THR 20 20 20 THR THR C . n C 3 21 ILE 21 21 21 ILE ILE C . n C 3 22 THR 22 22 22 THR THR C . n C 3 23 CYS 23 23 23 CYS CYS C . n C 3 24 ARG 24 24 24 ARG ARG C . n C 3 25 ALA 25 25 25 ALA ALA C . n C 3 26 SER 26 26 26 SER SER C . n C 3 27 GLN 27 27 27 GLN GLN C . n C 3 28 SER 28 28 28 SER SER C . n C 3 29 ILE 29 29 29 ILE ILE C . n C 3 30 SER 30 30 30 SER SER C . n C 3 31 ASN 31 31 31 ASN ASN C . n C 3 32 TYR 32 32 32 TYR TYR C . n C 3 33 LEU 33 33 33 LEU LEU C . n C 3 34 ASN 34 34 34 ASN ASN C . n C 3 35 TRP 35 35 35 TRP TRP C . n C 3 36 TYR 36 36 36 TYR TYR C . n C 3 37 GLN 37 37 37 GLN GLN C . n C 3 38 GLN 38 38 38 GLN GLN C . n C 3 39 LYS 39 39 39 LYS LYS C . n C 3 40 PRO 40 40 40 PRO PRO C . n C 3 41 GLY 41 41 41 GLY GLY C . n C 3 42 LYS 42 42 42 LYS LYS C . n C 3 43 ALA 43 43 43 ALA ALA C . n C 3 44 PRO 44 44 44 PRO PRO C . n C 3 45 LYS 45 45 45 LYS LYS C . n C 3 46 LEU 46 46 46 LEU LEU C . n C 3 47 LEU 47 47 47 LEU LEU C . n C 3 48 ILE 48 48 48 ILE ILE C . n C 3 49 TYR 49 49 49 TYR TYR C . n C 3 50 ALA 50 50 50 ALA ALA C . n C 3 51 ALA 51 51 51 ALA ALA C . n C 3 52 SER 52 52 52 SER SER C . n C 3 53 SER 53 53 53 SER SER C . n C 3 54 LEU 54 54 54 LEU LEU C . n C 3 55 GLN 55 55 55 GLN GLN C . n C 3 56 SER 56 56 56 SER SER C . n C 3 57 GLY 57 57 57 GLY GLY C . n C 3 58 VAL 58 58 58 VAL VAL C . n C 3 59 PRO 59 59 59 PRO PRO C . n C 3 60 SER 60 60 60 SER SER C . n C 3 61 ARG 61 61 61 ARG ARG C . n C 3 62 PHE 62 62 62 PHE PHE C . n C 3 63 SER 63 63 63 SER SER C . n C 3 64 GLY 64 64 64 GLY GLY C . n C 3 65 SER 65 65 65 SER SER C . n C 3 66 GLY 66 66 66 GLY GLY C . n C 3 67 SER 67 67 67 SER SER C . n C 3 68 GLY 68 68 68 GLY GLY C . n C 3 69 THR 69 69 69 THR THR C . n C 3 70 ASP 70 70 70 ASP ASP C . n C 3 71 PHE 71 71 71 PHE PHE C . n C 3 72 THR 72 72 72 THR THR C . n C 3 73 LEU 73 73 73 LEU LEU C . n C 3 74 THR 74 74 74 THR THR C . n C 3 75 ILE 75 75 75 ILE ILE C . n C 3 76 SER 76 76 76 SER SER C . n C 3 77 SER 77 77 77 SER SER C . n C 3 78 LEU 78 78 78 LEU LEU C . n C 3 79 GLN 79 79 79 GLN GLN C . n C 3 80 PRO 80 80 80 PRO PRO C . n C 3 81 GLU 81 81 81 GLU GLU C . n C 3 82 ASP 82 82 82 ASP ASP C . n C 3 83 PHE 83 83 83 PHE PHE C . n C 3 84 ALA 84 84 84 ALA ALA C . n C 3 85 THR 85 85 85 THR THR C . n C 3 86 TYR 86 86 86 TYR TYR C . n C 3 87 TYR 87 87 87 TYR TYR C . n C 3 88 CYS 88 88 88 CYS CYS C . n C 3 89 GLN 89 89 89 GLN GLN C . n C 3 90 GLN 90 90 90 GLN GLN C . n C 3 91 SER 91 91 91 SER SER C . n C 3 92 TYR 92 92 92 TYR TYR C . n C 3 93 SER 93 93 93 SER SER C . n C 3 94 PRO 94 94 94 PRO PRO C . n C 3 95 PRO 95 95 95 PRO PRO C . n C 3 96 PRO 96 96 96 PRO PRO C . n C 3 97 THR 97 97 97 THR THR C . n C 3 98 PHE 98 98 98 PHE PHE C . n C 3 99 GLY 99 99 99 GLY GLY C . n C 3 100 GLN 100 100 100 GLN GLN C . n C 3 101 GLY 101 101 101 GLY GLY C . n C 3 102 THR 102 102 102 THR THR C . n C 3 103 LYS 103 103 103 LYS LYS C . n C 3 104 LEU 104 104 104 LEU LEU C . n C 3 105 GLU 105 105 105 GLU GLU C . n C 3 106 ILE 106 106 106 ILE ILE C . n # _pdbx_contact_author.id 3 _pdbx_contact_author.email priyamvada.acharya@duke.edu _pdbx_contact_author.name_first Priyamvada _pdbx_contact_author.name_last Acharya _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-0089-277X # _pdbx_nonpoly_scheme.asym_id D _pdbx_nonpoly_scheme.entity_id 4 _pdbx_nonpoly_scheme.mon_id NAG _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 601 _pdbx_nonpoly_scheme.auth_seq_num 601 _pdbx_nonpoly_scheme.pdb_mon_id NAG _pdbx_nonpoly_scheme.auth_mon_id NAG _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-02-16 2 'Structure model' 1 1 2022-04-20 3 'Structure model' 1 2 2022-08-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data processing' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' em_3d_reconstruction 2 3 'Structure model' citation 3 3 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_em_3d_reconstruction.resolution' 2 3 'Structure model' '_citation.country' 3 3 'Structure model' '_citation.journal_abbrev' 4 3 'Structure model' '_citation.journal_id_ASTM' 5 3 'Structure model' '_citation.journal_id_CSD' 6 3 'Structure model' '_citation.journal_id_ISSN' 7 3 'Structure model' '_citation.journal_volume' 8 3 'Structure model' '_citation.page_first' 9 3 'Structure model' '_citation.page_last' 10 3 'Structure model' '_citation.pdbx_database_id_DOI' 11 3 'Structure model' '_citation.pdbx_database_id_PubMed' 12 3 'Structure model' '_citation.title' 13 3 'Structure model' '_citation.year' # _space_group_symop.id 1 _space_group_symop.operation_xyz x,y,z # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? phenix.real_space_refine ? ? ? 1.19.2_4158 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.19.2_4158 2 # _pdbx_entry_details.entry_id 7THE _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N # _em_3d_fitting.entry_id 7THE _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # loop_ _em_3d_fitting_list.3d_fitting_id _em_3d_fitting_list.details _em_3d_fitting_list.id _em_3d_fitting_list.pdb_chain_id _em_3d_fitting_list.pdb_chain_residue_range _em_3d_fitting_list.pdb_entry_id 1 ? 1 ? ? 7EAN 1 ? 2 ? ? 7THT # _em_3d_reconstruction.entry_id 7THE _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 78958 _em_3d_reconstruction.resolution 3.87 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 8 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'RBD directed antibody DH1042 in complex with SARS-CoV-2 spike' _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list '1, 2, 3' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 7THE _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max 3000 _em_imaging.nominal_defocus_min 500 _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 7THE _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7THE _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 403 ? ? CZ A ARG 403 ? ? NH1 A ARG 403 ? ? 124.33 120.30 4.03 0.50 N 2 1 NE A ARG 457 ? ? CZ A ARG 457 ? ? NH1 A ARG 457 ? ? 124.11 120.30 3.81 0.50 N 3 1 NE B ARG 38 ? ? CZ B ARG 38 ? ? NH1 B ARG 38 ? ? 123.85 120.30 3.55 0.50 N 4 1 NE B ARG 66 ? ? CZ B ARG 66 ? ? NH1 B ARG 66 ? ? 123.75 120.30 3.45 0.50 N 5 1 NE B ARG 83 ? ? CZ B ARG 83 ? ? NH1 B ARG 83 ? ? 123.45 120.30 3.15 0.50 N 6 1 NE B ARG 94 ? ? CZ B ARG 94 ? ? NH1 B ARG 94 ? ? 124.11 120.30 3.81 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 377 ? ? -144.19 39.41 2 1 PHE A 400 ? ? -171.69 -176.88 3 1 PRO A 426 ? ? -59.99 171.58 4 1 TYR A 449 ? ? -66.07 4.58 5 1 ASN A 481 ? ? 55.28 17.63 6 1 LEU A 517 ? ? -110.37 -76.60 7 1 LEU A 518 ? ? 63.51 -156.94 8 1 THR B 87 ? ? -145.47 41.75 9 1 GLN B 100 A ? -78.61 41.27 10 1 ALA C 50 ? ? -155.83 -156.19 11 1 SER C 60 ? ? -68.29 4.16 12 1 SER C 67 ? ? -159.68 88.87 13 1 THR C 69 ? ? -160.14 -168.43 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 2697049 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Severe acute respiratory syndrome coronavirus 2' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 9606 _em_entity_assembly_recombinant.organism 'Homo sapiens' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 54.02 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? _em_image_recording.avg_electron_dose_per_subtomogram ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? ? ? 1 ? ? 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? ? ? 8 'MODEL REFINEMENT' ? ? ? ? ? ? 9 OTHER ? ? ? ? ? ? 10 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 12 CLASSIFICATION ? ? ? 1 ? ? 13 RECONSTRUCTION ? ? ? 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name 2-acetamido-2-deoxy-beta-D-glucopyranose _pdbx_entity_nonpoly.comp_id NAG # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # _space_group.crystal_system triclinic _space_group.name_H-M_alt 'P 1' _space_group.IT_number 1 _space_group.name_Hall 'P 1' _space_group.id 1 #