HEADER LIGASE 11-JAN-22 7THN TITLE CRYSTAL STRUCTURE OF PIGI TRAPPED WITH PIGG USING A PROLINE ADENOSINE TITLE 2 VINYLSULFONAMIDE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-PROLINE--[L-PROLYL-CARRIER PROTEIN] LIGASE; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: L-PROLYL-AMP LIGASE; COMPND 5 EC: 6.2.1.53; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PROBABLE ACYL CARRIER PROTEIN PIGG; COMPND 9 CHAIN: E; COMPND 10 SYNONYM: PEPTIDYL CARRIER PROTEIN,PCP; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SERRATIA SP. ATCC 39006; SOURCE 3 ORGANISM_TAXID: 104623; SOURCE 4 STRAIN: ATCC 39006; SOURCE 5 GENE: PIGI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: SERRATIA SP. ATCC 39006; SOURCE 11 ORGANISM_TAXID: 104623; SOURCE 12 STRAIN: ATCC 39006; SOURCE 13 GENE: PIGG; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS NONRIBOSOMAL PEPTIDE SYNTHETASE, NRPS, TYPE II, BIOSYNTHESIS, LIGASE- KEYWDS 2 TRANSPORT PROTEIN COMPLEX, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR J.C.CORPUZ,L.M.PODUST REVDAT 2 25-OCT-23 7THN 1 REMARK REVDAT 1 30-NOV-22 7THN 0 JRNL AUTH J.C.CORPUZ,A.PATEL,T.D.DAVIS,L.M.PODUST,J.A.MCCAMMON, JRNL AUTH 2 M.D.BURKART JRNL TITL ESSENTIAL ROLE OF LOOP DYNAMICS IN TYPE II NRPS BIOMOLECULAR JRNL TITL 2 RECOGNITION. JRNL REF ACS CHEM.BIOL. V. 17 2890 2022 JRNL REFN ESSN 1554-8937 JRNL PMID 36173802 JRNL DOI 10.1021/ACSCHEMBIO.2C00523 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 75380 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 3615 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.61 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.65 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5271 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE SET COUNT : 278 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4190 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 105 REMARK 3 SOLVENT ATOMS : 620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : 0.08000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.02000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.077 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.080 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.060 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.763 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4402 ; 0.012 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4103 ; 0.003 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5992 ; 1.745 ; 1.646 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9487 ; 1.506 ; 1.577 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 559 ; 6.375 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 183 ;34.713 ;22.623 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 673 ;12.305 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;17.568 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 609 ; 0.144 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4837 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 841 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7THN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1000262321. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-AUG-19 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6.23 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.12 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 510902 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 62.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.11410 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 1.04500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.620 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 6O6E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.3 M MGCL2, 24.57% PEG 3350, AND 0.1 REMARK 280 M BIS-TRIS PH 6.23, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.33000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 PRO B 119 REMARK 465 SER B 120 REMARK 465 PHE B 121 REMARK 465 ASP B 122 REMARK 465 ALA B 123 REMARK 465 GLU B 124 REMARK 465 GLN B 125 REMARK 465 PRO B 126 REMARK 465 VAL B 127 REMARK 465 GLY B 128 REMARK 465 ARG B 129 REMARK 465 MET B 130 REMARK 465 ASN B 478 REMARK 465 GLY B 479 REMARK 465 HIS B 495 REMARK 465 HIS B 496 REMARK 465 HIS B 497 REMARK 465 HIS B 498 REMARK 465 HIS B 499 REMARK 465 HIS B 500 REMARK 465 HIS E 80 REMARK 465 PRO E 81 REMARK 465 GLU E 82 REMARK 465 GLN E 83 REMARK 465 GLY E 84 REMARK 465 GLY E 85 REMARK 465 ALA E 86 REMARK 465 ALA E 87 REMARK 465 TRP E 88 REMARK 465 GLU E 89 REMARK 465 HIS E 90 REMARK 465 HIS E 91 REMARK 465 HIS E 92 REMARK 465 HIS E 93 REMARK 465 HIS E 94 REMARK 465 HIS E 95 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR B 2 OG1 CG2 REMARK 470 ARG B 14 NE CZ NH1 NH2 REMARK 470 ARG B 18 NE CZ NH1 NH2 REMARK 470 GLN B 22 CG CD OE1 NE2 REMARK 470 GLN B 30 OE1 NE2 REMARK 470 GLN B 50 OE1 NE2 REMARK 470 GLN B 118 CG CD OE1 NE2 REMARK 470 VAL B 131 CG1 CG2 REMARK 470 HIS B 133 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 168 NE CZ NH1 NH2 REMARK 470 GLN B 220 CD OE1 NE2 REMARK 470 LYS B 242 CE NZ REMARK 470 ARG B 303 CG CD NE CZ NH1 NH2 REMARK 470 MET B 306 CG SD CE REMARK 470 ARG B 418 NE CZ NH1 NH2 REMARK 470 ARG B 429 CD NE CZ NH1 NH2 REMARK 470 GLN B 456 CG CD OE1 NE2 REMARK 470 LYS B 466 CD CE NZ REMARK 470 GLU B 471 CD OE1 OE2 REMARK 470 LYS B 480 CG CD CE NZ REMARK 470 LYS B 484 CG CD CE NZ REMARK 470 GLU B 494 CG CD OE1 OE2 REMARK 470 MET E 1 CG SD CE REMARK 470 GLU E 3 CD OE1 OE2 REMARK 470 GLU E 18 CG CD OE1 OE2 REMARK 470 LYS E 19 CG CD CE NZ REMARK 470 ASP E 20 CG OD1 OD2 REMARK 470 ASP E 44 CG OD1 OD2 REMARK 470 GLN E 57 CD OE1 NE2 REMARK 470 GLU E 58 CD OE1 OE2 REMARK 470 GLN E 68 CD OE1 NE2 REMARK 470 LYS E 78 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP E 35 O HOH E 301 1.85 REMARK 500 O HOH E 301 O HOH E 307 2.02 REMARK 500 O HOH B 759 O HOH E 301 2.06 REMARK 500 OE1 GLN B 369 O HOH B 701 2.07 REMARK 500 OE2 GLU B 21 NH2 ARG B 35 2.12 REMARK 500 O HOH B 829 O HOH E 301 2.13 REMARK 500 O HOH B 816 O HOH B 1208 2.16 REMARK 500 O HOH B 720 O HOH B 1106 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 810 O HOH B 955 1554 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY B 201 C ALA B 202 N 0.161 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 96 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 96 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 GLY B 201 O - C - N ANGL. DEV. = -10.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 292 -154.55 50.10 REMARK 500 ASP B 391 -152.57 -128.52 REMARK 500 ASP B 417 -70.28 -89.63 REMARK 500 ASP E 20 107.37 -51.89 REMARK 500 REMARK 500 REMARK: NULL DBREF 7THN B 1 492 UNP Q5W263 PIGI_SERS3 1 491 DBREF 7THN E 1 87 UNP Q5W265 PIGG_SERS3 1 87 SEQADV 7THN LEU B 493 UNP Q5W263 EXPRESSION TAG SEQADV 7THN GLU B 494 UNP Q5W263 EXPRESSION TAG SEQADV 7THN HIS B 495 UNP Q5W263 EXPRESSION TAG SEQADV 7THN HIS B 496 UNP Q5W263 EXPRESSION TAG SEQADV 7THN HIS B 497 UNP Q5W263 EXPRESSION TAG SEQADV 7THN HIS B 498 UNP Q5W263 EXPRESSION TAG SEQADV 7THN HIS B 499 UNP Q5W263 EXPRESSION TAG SEQADV 7THN HIS B 500 UNP Q5W263 EXPRESSION TAG SEQADV 7THN TRP E 88 UNP Q5W265 EXPRESSION TAG SEQADV 7THN GLU E 89 UNP Q5W265 EXPRESSION TAG SEQADV 7THN HIS E 90 UNP Q5W265 EXPRESSION TAG SEQADV 7THN HIS E 91 UNP Q5W265 EXPRESSION TAG SEQADV 7THN HIS E 92 UNP Q5W265 EXPRESSION TAG SEQADV 7THN HIS E 93 UNP Q5W265 EXPRESSION TAG SEQADV 7THN HIS E 94 UNP Q5W265 EXPRESSION TAG SEQADV 7THN HIS E 95 UNP Q5W265 EXPRESSION TAG SEQRES 1 B 499 MET THR ILE SER THR PRO VAL ILE ILE ASP SER LEU ILE SEQRES 2 B 499 ARG HIS ALA GLN ARG THR PRO GLU GLN THR ALA LEU LEU SEQRES 3 B 499 CYS GLY ASP GLN HIS TRP ASN TYR ARG GLN LEU VAL THR SEQRES 4 B 499 ARG ALA HIS VAL MET ALA SER ALA LEU ARG GLN ALA GLY SEQRES 5 B 499 LEU SER GLY GLN ALA ILE LEU LEU ASN LEU PRO LYS SER SEQRES 6 B 499 LEU ASP ALA VAL ALA ALA ILE TYR ALA THR TRP LEU SER SEQRES 7 B 499 GLY ASN HIS TYR ILE PRO ILE ASP TYR SER GLN PRO SER SEQRES 8 B 499 SER ARG ILE GLU ARG ILE ILE ALA ALA ALA ALA PRO ALA SEQRES 9 B 499 LEU ILE ILE ASP THR ALA TRP LEU ALA THR LEU ASP SER SEQRES 10 B 499 GLN PRO SER PHE ASP ALA GLU GLN PRO VAL GLY ARG MET SEQRES 11 B 499 VAL TYR HIS ASN PRO ILE ALA ALA ILE LEU TYR THR SER SEQRES 12 B 499 GLY SER THR GLY THR PRO LYS GLY VAL GLN ILE SER HIS SEQRES 13 B 499 GLU MET LEU GLY PHE PHE ILE GLN TRP ALA VAL ARG ASP SEQRES 14 B 499 THR GLN LEU THR ALA ARG ASP VAL LEU SER ASN HIS ALA SEQRES 15 B 499 SER PHE ALA PHE ASP LEU SER THR PHE ASP LEU PHE ALA SEQRES 16 B 499 SER ALA TYR VAL GLY ALA ALA THR TRP ILE ILE ARG GLU SEQRES 17 B 499 SER GLU GLN LYS ASP CYS ALA ALA LEU ALA GLN GLY LEU SEQRES 18 B 499 GLN ARG HIS ALA VAL SER VAL TRP TYR SER VAL PRO SER SEQRES 19 B 499 ILE LEU ALA MET LEU GLU LYS SER THR LEU LEU ASN PRO SEQRES 20 B 499 THR LEU GLY GLN SER LEU ARG GLN VAL ILE PHE ALA GLY SEQRES 21 B 499 GLU PRO TYR PRO VAL THR ALA LEU LYS ARG LEU LEU PRO SEQRES 22 B 499 CYS LEU PRO GLN PRO CYS ARG VAL SER ASN TRP TYR GLY SEQRES 23 B 499 PRO THR GLU THR ASN VAL CYS VAL ALA TYR ALA ILE ASP SEQRES 24 B 499 ARG ALA ARG LEU ALA MET LEU LYS GLN VAL PRO ILE GLY SEQRES 25 B 499 LEU PRO LEU GLU GLY LEU THR ALA GLN LEU GLU ASP GLU SEQRES 26 B 499 ASN GLY ASP ARG HIS PRO LEU THR ALA GLN LEU ARG LEU SEQRES 27 B 499 SER GLY GLU LEU LEU ILE SER GLY PRO CYS VAL THR PRO SEQRES 28 B 499 GLY TYR SER ASN VAL VAL VAL PRO ARG GLN ALA ALA LEU SEQRES 29 B 499 HIS PRO HIS GLN CYS HIS ALA THR GLY ASP TRP VAL GLU SEQRES 30 B 499 MET THR PRO GLU GLY LEU VAL PHE ARG GLY ARG ILE ASP SEQRES 31 B 499 ASP MET VAL LYS ILE ASN GLY TYR ARG VAL GLU LEU GLY SEQRES 32 B 499 GLU ILE GLU SER VAL LEU HIS GLN HIS PRO ALA ILE ASP SEQRES 33 B 499 ARG ALA ALA LEU CYS VAL GLU LEU GLY ASP LEU ARG GLN SEQRES 34 B 499 THR LEU ILE MET VAL ILE SER LEU GLN THR GLY ALA VAL SEQRES 35 B 499 PRO PRO GLY LEU LEU GLU LEU LYS GLN PHE LEU GLN GLN SEQRES 36 B 499 LYS LEU PRO SER TYR MET ILE PRO ASN LYS LEU VAL ILE SEQRES 37 B 499 THR GLU SER LEU PRO VAL ASN ALA ASN GLY LYS VAL ASP SEQRES 38 B 499 ARG LYS GLN LEU ALA GLY VAL VAL ALA VAL LEU GLU HIS SEQRES 39 B 499 HIS HIS HIS HIS HIS SEQRES 1 E 95 MET LEU GLU SER LYS LEU ILE ASN HIS ILE ALA THR GLN SEQRES 2 E 95 PHE LEU ASP GLY GLU LYS ASP GLY LEU ASP SER GLN THR SEQRES 3 E 95 PRO LEU PHE GLU LEU ASN ILE VAL ASP SER ALA ALA ILE SEQRES 4 E 95 PHE ASP LEU VAL ASP PHE LEU ARG GLN GLU SER LYS VAL SEQRES 5 E 95 SER ILE GLY MET GLN GLU ILE HIS PRO ALA ASN PHE ALA SEQRES 6 E 95 THR VAL GLN SER MET VAL ALA LEU VAL GLN ARG LEU LYS SEQRES 7 E 95 ALA HIS PRO GLU GLN GLY GLY ALA ALA TRP GLU HIS HIS SEQRES 8 E 95 HIS HIS HIS HIS HET GOL B 601 6 HET AZI B 602 3 HET AZI B 603 3 HET AZI B 604 3 HET AZI B 605 3 HET AZI B 606 3 HET AZI B 607 3 HET AZI B 608 3 HET AZI B 609 3 HET AZI B 610 3 HET AZI B 611 3 HET AZI B 612 3 HET AZI B 613 3 HET AZI B 614 3 HET MG B 615 1 HET AZI E 201 3 HET AZI E 202 3 HET AZI E 203 3 HET I5M E 204 50 HETNAM GOL GLYCEROL HETNAM AZI AZIDE ION HETNAM MG MAGNESIUM ION HETNAM I5M 5'-DEOXY-5'-({(2S)-2-({2-[(N-{(2R)-4-[(DIOXO-LAMBDA~5~- HETNAM 2 I5M PHOSPHANYL)OXY]-2-HYDROXY-3,3-DIMETHYLBUTANOYL}-BETA- HETNAM 3 I5M ALANYL)AMINO]ETHYL}SULFANYL)-2-[(2S)-PYRROLIDIN-2- HETNAM 4 I5M YL]ETHANESULFONYL}AMINO)ADENOSINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL C3 H8 O3 FORMUL 4 AZI 16(N3 1-) FORMUL 17 MG MG 2+ FORMUL 21 I5M C27 H44 N9 O11 P S2 FORMUL 22 HOH *620(H2 O) HELIX 1 AA1 PRO B 6 THR B 19 1 14 HELIX 2 AA2 TYR B 34 ALA B 51 1 18 HELIX 3 AA3 SER B 65 SER B 78 1 14 HELIX 4 AA4 PRO B 90 ALA B 102 1 13 HELIX 5 AA5 ASP B 108 SER B 117 1 10 HELIX 6 AA6 HIS B 156 GLN B 171 1 16 HELIX 7 AA7 ASP B 187 GLY B 201 1 14 HELIX 8 AA8 ARG B 208 GLN B 212 5 5 HELIX 9 AA9 ASP B 214 ALA B 226 1 13 HELIX 10 AB1 VAL B 233 SER B 243 1 11 HELIX 11 AB2 PRO B 265 LEU B 273 1 9 HELIX 12 AB3 PRO B 274 LEU B 276 5 3 HELIX 13 AB4 ASP B 300 ALA B 305 1 6 HELIX 14 AB5 VAL B 359 ALA B 364 1 6 HELIX 15 AB6 LEU B 365 HIS B 368 5 4 HELIX 16 AB7 LEU B 403 HIS B 411 1 9 HELIX 17 AB8 GLY B 446 GLN B 456 1 11 HELIX 18 AB9 PRO B 459 ILE B 463 5 5 HELIX 19 AC1 ASP B 482 LYS B 484 5 3 HELIX 20 AC2 GLN B 485 GLU B 494 1 10 HELIX 21 AC3 LEU E 2 LEU E 15 1 14 HELIX 22 AC4 ASP E 35 ALA E 37 5 3 HELIX 23 AC5 ALA E 38 LYS E 51 1 14 HELIX 24 AC6 HIS E 60 ALA E 65 5 6 HELIX 25 AC7 THR E 66 LYS E 78 1 13 SHEET 1 AA1 4 GLN B 30 ASN B 33 0 SHEET 2 AA1 4 THR B 23 CYS B 27 -1 N ALA B 24 O TRP B 32 SHEET 3 AA1 4 ALA B 203 ILE B 206 1 O ILE B 206 N LEU B 26 SHEET 4 AA1 4 VAL B 177 ASN B 180 1 N LEU B 178 O ALA B 203 SHEET 1 AA2 3 HIS B 81 PRO B 84 0 SHEET 2 AA2 3 ALA B 57 LEU B 60 1 N LEU B 60 O ILE B 83 SHEET 3 AA2 3 LEU B 105 ILE B 107 1 O ILE B 107 N LEU B 59 SHEET 1 AA3 2 ILE B 136 THR B 142 0 SHEET 2 AA3 2 LYS B 150 SER B 155 -1 O ILE B 154 N ALA B 138 SHEET 1 AA4 5 VAL B 229 SER B 232 0 SHEET 2 AA4 5 GLN B 256 ALA B 260 1 O ILE B 258 N TRP B 230 SHEET 3 AA4 5 ARG B 281 TYR B 286 1 O TRP B 285 N PHE B 259 SHEET 4 AA4 5 VAL B 295 ALA B 298 -1 O TYR B 297 N ASN B 284 SHEET 5 AA4 5 LEU B 314 PRO B 315 -1 O LEU B 314 N ALA B 296 SHEET 1 AA5 5 ARG B 330 PRO B 332 0 SHEET 2 AA5 5 THR B 320 GLU B 324 -1 N LEU B 323 O HIS B 331 SHEET 3 AA5 5 LEU B 339 SER B 346 -1 O LEU B 344 N GLN B 322 SHEET 4 AA5 5 CYS B 370 THR B 380 -1 O VAL B 377 N GLY B 341 SHEET 5 AA5 5 GLY B 383 ARG B 389 -1 O GLY B 388 N TRP B 376 SHEET 1 AA6 2 MET B 393 ILE B 396 0 SHEET 2 AA6 2 TYR B 399 GLU B 402 -1 O VAL B 401 N VAL B 394 SHEET 1 AA7 3 ILE B 416 GLY B 426 0 SHEET 2 AA7 3 ARG B 429 LEU B 438 -1 O VAL B 435 N ALA B 420 SHEET 3 AA7 3 LYS B 466 ILE B 469 1 O LYS B 466 N MET B 434 LINK OG SER E 36 P I5M E 204 1555 1555 1.55 CRYST1 50.670 92.660 66.770 90.00 110.47 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019736 0.000000 0.007367 0.00000 SCALE2 0.000000 0.010792 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015986 0.00000