HEADER HYDROLASE 12-JAN-22 7TI1 TITLE STRUCTURE OF AMPC BOUND TO RPX-7063 AT 2.0A COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CEPHALOSPORINASE; COMPND 5 EC: 3.5.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTER CLOACAE; SOURCE 3 ORGANISM_TAXID: 550; SOURCE 4 GENE: AMPC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS AMPC, ANTIBIOTIC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.C.CLIFTON,J.ABENDROTH,T.E.EDWARDS,S.J.HECKER REVDAT 3 25-OCT-23 7TI1 1 REMARK REVDAT 2 24-MAY-23 7TI1 1 JRNL REVDAT 1 25-JAN-23 7TI1 0 JRNL AUTH K.RAJA REDDY,M.TOTROV,O.LOMOVSKAYA,D.C.GRIFFITH,Z.TARAZI, JRNL AUTH 2 M.C.CLIFTON,S.J.HECKER JRNL TITL BROAD-SPECTRUM CYCLIC BORONATE BETA-LACTAMASE INHIBITORS JRNL TITL 2 FEATURING AN INTRAMOLECULAR PRODRUG FOR ORAL JRNL TITL 3 BIOAVAILABILITY. JRNL REF BIOORG.MED.CHEM. V. 62 16722 2022 JRNL REFN ESSN 1464-3391 JRNL PMID 35358864 JRNL DOI 10.1016/J.BMC.2022.116722 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 23033 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1184 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1308 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.02 REMARK 3 BIN R VALUE (WORKING SET) : 0.1900 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2741 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 328 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.15000 REMARK 3 B22 (A**2) : -0.50000 REMARK 3 B33 (A**2) : 0.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.190 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.166 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.100 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.547 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2885 ; 0.013 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1893 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3954 ; 1.568 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4649 ; 0.943 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 372 ; 6.339 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 116 ;36.777 ;24.741 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 441 ;13.213 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;14.891 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 437 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3236 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 563 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : NULL NULL NULL NULL REMARK 3 ORIGIN FOR THE GROUP (A): 58.0950 18.9947 52.0762 REMARK 3 T TENSOR REMARK 3 T11: 0.0109 T22: 0.0021 REMARK 3 T33: 0.0218 T12: 0.0041 REMARK 3 T13: 0.0051 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.2622 L22: 0.0962 REMARK 3 L33: 0.4378 L12: -0.0661 REMARK 3 L13: -0.0816 L23: 0.0316 REMARK 3 S TENSOR REMARK 3 S11: 0.0393 S12: 0.0136 S13: 0.0157 REMARK 3 S21: -0.0160 S22: -0.0071 S23: -0.0031 REMARK 3 S31: -0.0256 S32: -0.0058 S33: -0.0322 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 7TI1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1000262340. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : RIGAKU VARIMAX REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23033 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.3400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.13 REMARK 200 R MERGE FOR SHELL (I) : 0.35100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1XX2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG3000, 0.1M TRIS PH 7.0, 0.2M REMARK 280 NACL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 34.48000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.99000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.48000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.99000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET A 2 REMARK 465 ARG A 3 REMARK 465 LYS A 4 REMARK 465 SER A 5 REMARK 465 LEU A 6 REMARK 465 CYS A 7 REMARK 465 CYS A 8 REMARK 465 ALA A 9 REMARK 465 LEU A 10 REMARK 465 LEU A 11 REMARK 465 LEU A 12 REMARK 465 GLY A 13 REMARK 465 ILE A 14 REMARK 465 SER A 15 REMARK 465 CYS A 16 REMARK 465 SER A 17 REMARK 465 ALA A 18 REMARK 465 LEU A 19 REMARK 465 ALA A 20 REMARK 465 THR A 21 REMARK 465 PRO A 22 REMARK 465 LEU A 382 REMARK 465 GLU A 383 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 119 CG CD CE NZ REMARK 470 LYS A 227 CG CD CE NZ REMARK 470 LYS A 329 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASN A 157 NZ LYS A 269 4457 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 269 CD - CE - NZ ANGL. DEV. = -14.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 174 -71.12 -81.11 REMARK 500 TYR A 241 12.68 -158.17 REMARK 500 THR A 339 -165.95 -121.29 REMARK 500 ASN A 361 37.39 -99.11 REMARK 500 REMARK 500 REMARK: NULL DBREF 7TI1 A 1 381 UNP P05364 AMPC_ENTCL 1 381 SEQADV 7TI1 LEU A 382 UNP P05364 EXPRESSION TAG SEQADV 7TI1 GLU A 383 UNP P05364 EXPRESSION TAG SEQRES 1 A 383 MET MET ARG LYS SER LEU CYS CYS ALA LEU LEU LEU GLY SEQRES 2 A 383 ILE SER CYS SER ALA LEU ALA THR PRO VAL SER GLU LYS SEQRES 3 A 383 GLN LEU ALA GLU VAL VAL ALA ASN THR ILE THR PRO LEU SEQRES 4 A 383 MET LYS ALA GLN SER VAL PRO GLY MET ALA VAL ALA VAL SEQRES 5 A 383 ILE TYR GLN GLY LYS PRO HIS TYR TYR THR PHE GLY LYS SEQRES 6 A 383 ALA ASP ILE ALA ALA ASN LYS PRO VAL THR PRO GLN THR SEQRES 7 A 383 LEU PHE GLU LEU GLY SER ILE SER LYS THR PHE THR GLY SEQRES 8 A 383 VAL LEU GLY GLY ASP ALA ILE ALA ARG GLY GLU ILE SER SEQRES 9 A 383 LEU ASP ASP ALA VAL THR ARG TYR TRP PRO GLN LEU THR SEQRES 10 A 383 GLY LYS GLN TRP GLN GLY ILE ARG MET LEU ASP LEU ALA SEQRES 11 A 383 THR TYR THR ALA GLY GLY LEU PRO LEU GLN VAL PRO ASP SEQRES 12 A 383 GLU VAL THR ASP ASN ALA SER LEU LEU ARG PHE TYR GLN SEQRES 13 A 383 ASN TRP GLN PRO GLN TRP LYS PRO GLY THR THR ARG LEU SEQRES 14 A 383 TYR ALA ASN ALA SER ILE GLY LEU PHE GLY ALA LEU ALA SEQRES 15 A 383 VAL LYS PRO SER GLY MET PRO TYR GLU GLN ALA MET THR SEQRES 16 A 383 THR ARG VAL LEU LYS PRO LEU LYS LEU ASP HIS THR TRP SEQRES 17 A 383 ILE ASN VAL PRO LYS ALA GLU GLU ALA HIS TYR ALA TRP SEQRES 18 A 383 GLY TYR ARG ASP GLY LYS ALA VAL ARG VAL SER PRO GLY SEQRES 19 A 383 MET LEU ASP ALA GLN ALA TYR GLY VAL LYS THR ASN VAL SEQRES 20 A 383 GLN ASP MET ALA ASN TRP VAL MET ALA ASN MET ALA PRO SEQRES 21 A 383 GLU ASN VAL ALA ASP ALA SER LEU LYS GLN GLY ILE ALA SEQRES 22 A 383 LEU ALA GLN SER ARG TYR TRP ARG ILE GLY SER MET TYR SEQRES 23 A 383 GLN GLY LEU GLY TRP GLU MET LEU ASN TRP PRO VAL GLU SEQRES 24 A 383 ALA ASN THR VAL VAL GLU GLY SER ASP SER LYS VAL ALA SEQRES 25 A 383 LEU ALA PRO LEU PRO VAL ALA GLU VAL ASN PRO PRO ALA SEQRES 26 A 383 PRO PRO VAL LYS ALA SER TRP VAL HIS LYS THR GLY SER SEQRES 27 A 383 THR GLY GLY PHE GLY SER TYR VAL ALA PHE ILE PRO GLU SEQRES 28 A 383 LYS GLN ILE GLY ILE VAL MET LEU ALA ASN THR SER TYR SEQRES 29 A 383 PRO ASN PRO ALA ARG VAL GLU ALA ALA TYR HIS ILE LEU SEQRES 30 A 383 GLU ALA LEU GLN LEU GLU HET ZXQ A 401 21 HET EDO A 402 4 HET EDO A 403 4 HET CL A 404 1 HETNAM ZXQ {(3R,7S)-2-HYDROXY-3-[2-(THIOPHEN-2-YL)ACETAMIDO]-2,3, HETNAM 2 ZXQ 4,7-TETRAHYDRO-1,2-OXABOREPIN-7-YL}ACETIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ZXQ C13 H16 B N O5 S FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 CL CL 1- FORMUL 6 HOH *328(H2 O) HELIX 1 AA1 SER A 24 SER A 44 1 21 HELIX 2 AA2 ILE A 85 ARG A 100 1 16 HELIX 3 AA3 ALA A 108 TYR A 112 5 5 HELIX 4 AA4 GLY A 118 GLN A 122 5 5 HELIX 5 AA5 ARG A 125 THR A 131 1 7 HELIX 6 AA6 ASP A 147 TRP A 158 1 12 HELIX 7 AA7 ALA A 171 VAL A 183 1 13 HELIX 8 AA8 LYS A 184 GLY A 187 5 4 HELIX 9 AA9 PRO A 189 VAL A 198 1 10 HELIX 10 AB1 PRO A 212 TYR A 219 5 8 HELIX 11 AB2 LEU A 236 TYR A 241 1 6 HELIX 12 AB3 ASN A 246 ALA A 259 1 14 HELIX 13 AB4 PRO A 260 VAL A 263 5 4 HELIX 14 AB5 ASP A 265 GLN A 276 1 12 HELIX 15 AB6 GLU A 299 ASP A 308 1 10 HELIX 16 AB7 ASP A 308 LEU A 313 1 6 HELIX 17 AB8 PRO A 365 ALA A 379 1 15 SHEET 1 AA110 LYS A 72 PRO A 73 0 SHEET 2 AA110 LYS A 57 ASP A 67 -1 N ALA A 66 O LYS A 72 SHEET 3 AA110 GLY A 47 TYR A 54 -1 N VAL A 50 O TYR A 61 SHEET 4 AA110 ILE A 354 ALA A 360 -1 O GLY A 355 N ILE A 53 SHEET 5 AA110 GLY A 343 ILE A 349 -1 N TYR A 345 O MET A 358 SHEET 6 AA110 SER A 331 SER A 338 -1 N VAL A 333 O PHE A 348 SHEET 7 AA110 GLU A 292 ASN A 295 -1 N LEU A 294 O TRP A 332 SHEET 8 AA110 MET A 285 GLN A 287 -1 N TYR A 286 O MET A 293 SHEET 9 AA110 ARG A 278 ILE A 282 -1 N ILE A 282 O MET A 285 SHEET 10 AA110 ALA A 319 ALA A 325 -1 O ALA A 319 N ARG A 281 SHEET 1 AA2 2 PHE A 80 GLU A 81 0 SHEET 2 AA2 2 LYS A 244 THR A 245 -1 O THR A 245 N PHE A 80 SHEET 1 AA3 2 THR A 167 ARG A 168 0 SHEET 2 AA3 2 LEU A 316 PRO A 317 -1 O LEU A 316 N ARG A 168 SHEET 1 AA4 2 GLY A 222 ARG A 224 0 SHEET 2 AA4 2 LYS A 227 VAL A 229 -1 O LYS A 227 N ARG A 224 LINK OG SER A 84 B15 ZXQ A 401 1555 1555 1.47 CISPEP 1 TRP A 296 PRO A 297 0 3.43 CISPEP 2 ASN A 322 PRO A 323 0 -1.64 CRYST1 68.960 77.980 62.260 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014501 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012824 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016062 0.00000