HEADER VIRUS LIKE PARTICLE 16-JAN-22 7TJE TITLE BACTERIOPHAGE Q BETA CAPSID PROTEIN A38K CAVEAT 7TJE RESIDUES VAL A 92 AND THR A 93 THAT ARE NEXT TO EACH OTHER CAVEAT 2 7TJE IN THE SAMPLE SEQUENCE ARE NOT PROPERLY LINKED: DISTANCE CAVEAT 3 7TJE BETWEEN C AND N IS 1.05. RESIDUES THR A 93 AND PHE A 94 CAVEAT 4 7TJE THAT ARE NEXT TO EACH OTHER IN THE SAMPLE SEQUENCE ARE NOT CAVEAT 5 7TJE PROPERLY LINKED: DISTANCE BETWEEN C AND N IS 1.15. COMPND MOL_ID: 1; COMPND 2 MOLECULE: MINOR CAPSID PROTEIN A1; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 SYNONYM: A1 READ-THROUGH PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTERIOPHAGE SP.; SOURCE 3 ORGANISM_TAXID: 38018; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BACTERIOPHAGE Q BETA CAPSID, VIRUS LIKE PARTICLE, T1 SYMMETRY EXPDTA X-RAY DIFFRACTION AUTHOR X.JIN REVDAT 2 25-OCT-23 7TJE 1 REMARK REVDAT 1 25-JAN-23 7TJE 0 JRNL AUTH V.SHAW,S.SUNGSUWAN,H.MCFALL-BOEGEMAN,X.HUANG,X.JIN JRNL TITL ALTERNATIVE ASSEMBLY OF Q BETA VIRUS-LIKE PARTICLES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.SUNGSUWAN,X.WU,V.SHAW,H.MCFALL-BOEGEMAN, REMARK 1 AUTH 2 Z.RASHIDIJAHANABAD,Z.TAN,S.LANG,S.TAHMASEBI NICK,P.LIN, REMARK 1 AUTH 3 Z.YIN,S.RAMADAN,X.JIN,X.HUANG REMARK 1 TITL STRUCTURE GUIDED DESIGN OF BACTERIOPHAGE Q BETA MUTANTS AS REMARK 1 TITL 2 NEXT GENERATION CARRIERS FOR CONJUGATE VACCINES REMARK 1 REF ACS CHEMICAL BIOLOGY 2022 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 29441 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1500 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.7000 - 6.2195 1.00 2685 154 0.2110 0.2442 REMARK 3 2 6.2195 - 4.9385 1.00 2599 149 0.2016 0.2612 REMARK 3 3 4.9385 - 4.3148 1.00 2617 132 0.1618 0.2057 REMARK 3 4 4.3148 - 3.9205 1.00 2601 137 0.2076 0.2565 REMARK 3 5 3.9205 - 3.6397 1.00 2575 127 0.2379 0.2743 REMARK 3 6 3.6397 - 3.4251 0.78 2016 103 0.2121 0.2556 REMARK 3 7 3.4251 - 3.2537 1.00 2594 131 0.2459 0.3064 REMARK 3 8 3.2537 - 3.1121 1.00 2562 155 0.2766 0.3471 REMARK 3 9 3.1121 - 2.9923 1.00 2580 110 0.2732 0.3414 REMARK 3 10 2.9923 - 2.8890 1.00 2575 150 0.2934 0.3462 REMARK 3 11 2.8890 - 2.8000 1.00 2537 152 0.2686 0.3346 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5060 REMARK 3 ANGLE : 1.120 6895 REMARK 3 CHIRALITY : 0.061 830 REMARK 3 PLANARITY : 0.007 910 REMARK 3 DIHEDRAL : 4.261 3145 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7TJE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1000262459. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7-7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29445 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.799 REMARK 200 RESOLUTION RANGE LOW (A) : 45.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1QBE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, L-PROLINE, HEPES, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 97.07150 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 97.07150 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 97.07150 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 97.07150 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 97.07150 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 97.07150 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 97.07150 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 97.07150 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 97.07150 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 97.07150 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 97.07150 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 97.07150 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 97.07150 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 97.07150 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 97.07150 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 97.07150 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 97.07150 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 97.07150 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 97.07150 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 97.07150 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 97.07150 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 97.07150 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 97.07150 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 97.07150 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 97.07150 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 97.07150 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 97.07150 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 97.07150 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 97.07150 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 97.07150 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 97.07150 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 97.07150 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 97.07150 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 97.07150 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 97.07150 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 97.07150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 60-MERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 60-MERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 299220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 304440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1974.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 388.28600 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 388.28600 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 5 1.000000 0.000000 0.000000 194.14300 REMARK 350 BIOMT3 5 0.000000 1.000000 0.000000 -194.14300 REMARK 350 BIOMT1 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 6 -1.000000 0.000000 0.000000 194.14300 REMARK 350 BIOMT3 6 0.000000 -1.000000 0.000000 194.14300 REMARK 350 BIOMT1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 7 -1.000000 0.000000 0.000000 194.14300 REMARK 350 BIOMT3 7 0.000000 1.000000 0.000000 -194.14300 REMARK 350 BIOMT1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 8 1.000000 0.000000 0.000000 194.14300 REMARK 350 BIOMT3 8 0.000000 -1.000000 0.000000 194.14300 REMARK 350 BIOMT1 9 0.000000 1.000000 0.000000 -194.14300 REMARK 350 BIOMT2 9 0.000000 0.000000 1.000000 194.14300 REMARK 350 BIOMT3 9 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 10 0.000000 -1.000000 0.000000 194.14300 REMARK 350 BIOMT2 10 0.000000 0.000000 1.000000 194.14300 REMARK 350 BIOMT3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 11 0.000000 1.000000 0.000000 -194.14300 REMARK 350 BIOMT2 11 0.000000 0.000000 -1.000000 194.14300 REMARK 350 BIOMT3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 12 0.000000 -1.000000 0.000000 194.14300 REMARK 350 BIOMT2 12 0.000000 0.000000 -1.000000 194.14300 REMARK 350 BIOMT3 12 1.000000 0.000000 0.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG2 VAL B 26 O HOH B 236 2.10 REMARK 500 NZ LYS D 67 O HOH D 201 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 ND2 ASN B 27 ND2 ASN B 27 5564 1.26 REMARK 500 O HOH E 203 O HOH E 203 3555 2.02 REMARK 500 O HOH A 222 O HOH B 224 5564 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 92 C THR A 93 N -0.283 REMARK 500 THR A 93 C PHE A 94 N -0.186 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 92 O - C - N ANGL. DEV. = -16.4 DEGREES REMARK 500 THR A 93 C - N - CA ANGL. DEV. = 23.6 DEGREES REMARK 500 THR A 93 CA - C - N ANGL. DEV. = 15.5 DEGREES REMARK 500 THR A 93 O - C - N ANGL. DEV. = -23.3 DEGREES REMARK 500 PRO B 28 C - N - CD ANGL. DEV. = -14.1 DEGREES REMARK 500 PRO B 28 CA - N - CD ANGL. DEV. = -15.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 3 78.26 -60.58 REMARK 500 THR A 5 94.55 -58.64 REMARK 500 ASN A 10 73.92 27.22 REMARK 500 ASN A 27 77.90 24.13 REMARK 500 THR A 29 -4.92 -179.74 REMARK 500 ASN A 30 22.07 -148.42 REMARK 500 SER A 36 133.82 -171.07 REMARK 500 SER A 56 -142.76 -132.88 REMARK 500 ASN A 77 -157.27 -159.70 REMARK 500 PRO A 130 -160.22 -62.00 REMARK 500 LEU B 3 97.83 -60.26 REMARK 500 THR B 5 101.99 -49.69 REMARK 500 ASN B 10 65.98 19.86 REMARK 500 ARG B 24 37.45 -140.78 REMARK 500 ASN B 27 -105.88 84.89 REMARK 500 SER B 56 -136.28 -129.27 REMARK 500 ASN B 77 -150.65 -168.39 REMARK 500 PRO B 130 -171.62 -64.82 REMARK 500 THR C 5 91.69 -50.15 REMARK 500 ASN C 27 61.42 33.69 REMARK 500 THR C 29 -0.74 -175.97 REMARK 500 ASN C 30 25.46 -149.93 REMARK 500 ALA C 33 151.71 -49.10 REMARK 500 SER C 56 -139.30 -111.84 REMARK 500 ASN C 77 -165.28 -162.22 REMARK 500 PRO C 130 -163.69 -60.14 REMARK 500 THR D 5 96.22 -56.73 REMARK 500 THR D 29 -1.85 -177.46 REMARK 500 ASN D 30 23.22 -150.73 REMARK 500 SER D 36 149.05 -172.73 REMARK 500 LYS D 38 109.21 -52.20 REMARK 500 SER D 56 -149.65 -140.99 REMARK 500 ARG D 57 -72.57 -61.17 REMARK 500 ASN D 77 -161.47 -163.13 REMARK 500 PRO D 130 -158.32 -58.54 REMARK 500 LEU E 3 86.56 -60.27 REMARK 500 ARG E 24 37.29 -144.66 REMARK 500 THR E 29 -6.62 172.61 REMARK 500 ASN E 30 21.40 -148.94 REMARK 500 SER E 56 -143.29 -134.33 REMARK 500 ASN E 77 -151.98 -155.17 REMARK 500 PRO E 130 -166.45 -63.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 77 GLY A 78 145.95 REMARK 500 PRO B 28 THR B 29 -78.80 REMARK 500 ASN B 77 GLY B 78 147.35 REMARK 500 ASN C 77 GLY C 78 146.54 REMARK 500 ASN D 77 GLY D 78 144.56 REMARK 500 ASN E 77 GLY E 78 145.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 VAL A 92 -14.79 REMARK 500 THR A 93 22.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 240 DISTANCE = 6.10 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7TJD RELATED DB: PDB REMARK 900 WILD TYPE IN T=1 DBREF 7TJE A 1 132 UNP Q8LTE1 A1_BPQBE 2 133 DBREF 7TJE B 1 132 UNP Q8LTE1 A1_BPQBE 2 133 DBREF 7TJE C 1 132 UNP Q8LTE1 A1_BPQBE 2 133 DBREF 7TJE D 1 132 UNP Q8LTE1 A1_BPQBE 2 133 DBREF 7TJE E 1 132 UNP Q8LTE1 A1_BPQBE 2 133 SEQADV 7TJE LYS A 38 UNP Q8LTE1 ALA 39 ENGINEERED MUTATION SEQADV 7TJE LYS B 38 UNP Q8LTE1 ALA 39 ENGINEERED MUTATION SEQADV 7TJE LYS C 38 UNP Q8LTE1 ALA 39 ENGINEERED MUTATION SEQADV 7TJE LYS D 38 UNP Q8LTE1 ALA 39 ENGINEERED MUTATION SEQADV 7TJE LYS E 38 UNP Q8LTE1 ALA 39 ENGINEERED MUTATION SEQRES 1 A 132 ALA LYS LEU GLU THR VAL THR LEU GLY ASN ILE GLY LYS SEQRES 2 A 132 ASP GLY LYS GLN THR LEU VAL LEU ASN PRO ARG GLY VAL SEQRES 3 A 132 ASN PRO THR ASN GLY VAL ALA SER LEU SER GLN LYS GLY SEQRES 4 A 132 ALA VAL PRO ALA LEU GLU LYS ARG VAL THR VAL SER VAL SEQRES 5 A 132 SER GLN PRO SER ARG ASN ARG LYS ASN TYR LYS VAL GLN SEQRES 6 A 132 VAL LYS ILE GLN ASN PRO THR ALA CYS THR ALA ASN GLY SEQRES 7 A 132 SER CYS ASP PRO SER VAL THR ARG GLN ALA TYR ALA ASP SEQRES 8 A 132 VAL THR PHE SER PHE THR GLN TYR SER THR ASP GLU GLU SEQRES 9 A 132 ARG ALA PHE VAL ARG THR GLU LEU ALA ALA LEU LEU ALA SEQRES 10 A 132 SER PRO LEU LEU ILE ASP ALA ILE ASP GLN LEU ASN PRO SEQRES 11 A 132 ALA TYR SEQRES 1 B 132 ALA LYS LEU GLU THR VAL THR LEU GLY ASN ILE GLY LYS SEQRES 2 B 132 ASP GLY LYS GLN THR LEU VAL LEU ASN PRO ARG GLY VAL SEQRES 3 B 132 ASN PRO THR ASN GLY VAL ALA SER LEU SER GLN LYS GLY SEQRES 4 B 132 ALA VAL PRO ALA LEU GLU LYS ARG VAL THR VAL SER VAL SEQRES 5 B 132 SER GLN PRO SER ARG ASN ARG LYS ASN TYR LYS VAL GLN SEQRES 6 B 132 VAL LYS ILE GLN ASN PRO THR ALA CYS THR ALA ASN GLY SEQRES 7 B 132 SER CYS ASP PRO SER VAL THR ARG GLN ALA TYR ALA ASP SEQRES 8 B 132 VAL THR PHE SER PHE THR GLN TYR SER THR ASP GLU GLU SEQRES 9 B 132 ARG ALA PHE VAL ARG THR GLU LEU ALA ALA LEU LEU ALA SEQRES 10 B 132 SER PRO LEU LEU ILE ASP ALA ILE ASP GLN LEU ASN PRO SEQRES 11 B 132 ALA TYR SEQRES 1 C 132 ALA LYS LEU GLU THR VAL THR LEU GLY ASN ILE GLY LYS SEQRES 2 C 132 ASP GLY LYS GLN THR LEU VAL LEU ASN PRO ARG GLY VAL SEQRES 3 C 132 ASN PRO THR ASN GLY VAL ALA SER LEU SER GLN LYS GLY SEQRES 4 C 132 ALA VAL PRO ALA LEU GLU LYS ARG VAL THR VAL SER VAL SEQRES 5 C 132 SER GLN PRO SER ARG ASN ARG LYS ASN TYR LYS VAL GLN SEQRES 6 C 132 VAL LYS ILE GLN ASN PRO THR ALA CYS THR ALA ASN GLY SEQRES 7 C 132 SER CYS ASP PRO SER VAL THR ARG GLN ALA TYR ALA ASP SEQRES 8 C 132 VAL THR PHE SER PHE THR GLN TYR SER THR ASP GLU GLU SEQRES 9 C 132 ARG ALA PHE VAL ARG THR GLU LEU ALA ALA LEU LEU ALA SEQRES 10 C 132 SER PRO LEU LEU ILE ASP ALA ILE ASP GLN LEU ASN PRO SEQRES 11 C 132 ALA TYR SEQRES 1 D 132 ALA LYS LEU GLU THR VAL THR LEU GLY ASN ILE GLY LYS SEQRES 2 D 132 ASP GLY LYS GLN THR LEU VAL LEU ASN PRO ARG GLY VAL SEQRES 3 D 132 ASN PRO THR ASN GLY VAL ALA SER LEU SER GLN LYS GLY SEQRES 4 D 132 ALA VAL PRO ALA LEU GLU LYS ARG VAL THR VAL SER VAL SEQRES 5 D 132 SER GLN PRO SER ARG ASN ARG LYS ASN TYR LYS VAL GLN SEQRES 6 D 132 VAL LYS ILE GLN ASN PRO THR ALA CYS THR ALA ASN GLY SEQRES 7 D 132 SER CYS ASP PRO SER VAL THR ARG GLN ALA TYR ALA ASP SEQRES 8 D 132 VAL THR PHE SER PHE THR GLN TYR SER THR ASP GLU GLU SEQRES 9 D 132 ARG ALA PHE VAL ARG THR GLU LEU ALA ALA LEU LEU ALA SEQRES 10 D 132 SER PRO LEU LEU ILE ASP ALA ILE ASP GLN LEU ASN PRO SEQRES 11 D 132 ALA TYR SEQRES 1 E 132 ALA LYS LEU GLU THR VAL THR LEU GLY ASN ILE GLY LYS SEQRES 2 E 132 ASP GLY LYS GLN THR LEU VAL LEU ASN PRO ARG GLY VAL SEQRES 3 E 132 ASN PRO THR ASN GLY VAL ALA SER LEU SER GLN LYS GLY SEQRES 4 E 132 ALA VAL PRO ALA LEU GLU LYS ARG VAL THR VAL SER VAL SEQRES 5 E 132 SER GLN PRO SER ARG ASN ARG LYS ASN TYR LYS VAL GLN SEQRES 6 E 132 VAL LYS ILE GLN ASN PRO THR ALA CYS THR ALA ASN GLY SEQRES 7 E 132 SER CYS ASP PRO SER VAL THR ARG GLN ALA TYR ALA ASP SEQRES 8 E 132 VAL THR PHE SER PHE THR GLN TYR SER THR ASP GLU GLU SEQRES 9 E 132 ARG ALA PHE VAL ARG THR GLU LEU ALA ALA LEU LEU ALA SEQRES 10 E 132 SER PRO LEU LEU ILE ASP ALA ILE ASP GLN LEU ASN PRO SEQRES 11 E 132 ALA TYR FORMUL 6 HOH *161(H2 O) HELIX 1 AA1 VAL A 41 GLU A 45 5 5 HELIX 2 AA2 THR A 101 LEU A 116 1 16 HELIX 3 AA3 SER A 118 GLN A 127 1 10 HELIX 4 AA4 VAL B 41 GLU B 45 5 5 HELIX 5 AA5 THR B 101 LEU B 116 1 16 HELIX 6 AA6 SER B 118 ASP B 126 1 9 HELIX 7 AA7 VAL C 41 GLU C 45 5 5 HELIX 8 AA8 THR C 101 ALA C 117 1 17 HELIX 9 AA9 SER C 118 ASP C 126 1 9 HELIX 10 AB1 VAL D 41 GLU D 45 5 5 HELIX 11 AB2 THR D 101 LEU D 116 1 16 HELIX 12 AB3 SER D 118 GLN D 127 1 10 HELIX 13 AB4 VAL E 41 GLU E 45 5 5 HELIX 14 AB5 THR E 101 ALA E 117 1 17 HELIX 15 AB6 SER E 118 GLN E 127 1 10 SHEET 1 AA1 6 VAL A 6 ILE A 11 0 SHEET 2 AA1 6 GLN A 17 PRO A 23 -1 O LEU A 19 N LEU A 8 SHEET 3 AA1 6 ALA A 33 SER A 36 -1 O SER A 36 N ASN A 22 SHEET 4 AA1 6 ARG A 47 SER A 53 -1 O VAL A 48 N LEU A 35 SHEET 5 AA1 6 TYR A 62 CYS A 74 -1 O GLN A 69 N ARG A 47 SHEET 6 AA1 6 SER A 83 PHE A 96 -1 O PHE A 96 N TYR A 62 SHEET 1 AA2 6 VAL B 6 ILE B 11 0 SHEET 2 AA2 6 GLN B 17 PRO B 23 -1 O LEU B 19 N LEU B 8 SHEET 3 AA2 6 ALA B 33 SER B 36 -1 O SER B 36 N ASN B 22 SHEET 4 AA2 6 ARG B 47 SER B 53 -1 O VAL B 48 N LEU B 35 SHEET 5 AA2 6 TYR B 62 CYS B 74 -1 O GLN B 65 N SER B 51 SHEET 6 AA2 6 SER B 83 PHE B 96 -1 O PHE B 94 N VAL B 64 SHEET 1 AA3 6 VAL C 6 ILE C 11 0 SHEET 2 AA3 6 GLN C 17 PRO C 23 -1 O LEU C 19 N LEU C 8 SHEET 3 AA3 6 ALA C 33 SER C 36 -1 O SER C 36 N ASN C 22 SHEET 4 AA3 6 ARG C 47 SER C 53 -1 O VAL C 50 N ALA C 33 SHEET 5 AA3 6 TYR C 62 CYS C 74 -1 O LYS C 63 N SER C 53 SHEET 6 AA3 6 SER C 83 PHE C 96 -1 O VAL C 92 N VAL C 66 SHEET 1 AA4 6 THR D 7 ILE D 11 0 SHEET 2 AA4 6 GLN D 17 PRO D 23 -1 O LEU D 19 N LEU D 8 SHEET 3 AA4 6 ALA D 33 GLN D 37 -1 O SER D 36 N ASN D 22 SHEET 4 AA4 6 ARG D 47 SER D 53 -1 O VAL D 48 N LEU D 35 SHEET 5 AA4 6 TYR D 62 CYS D 74 -1 O GLN D 65 N SER D 51 SHEET 6 AA4 6 SER D 83 PHE D 96 -1 O PHE D 96 N TYR D 62 SHEET 1 AA5 6 VAL E 6 ILE E 11 0 SHEET 2 AA5 6 GLN E 17 PRO E 23 -1 O LEU E 21 N VAL E 6 SHEET 3 AA5 6 ALA E 33 GLN E 37 -1 O SER E 36 N ASN E 22 SHEET 4 AA5 6 LYS E 46 SER E 53 -1 O VAL E 48 N LEU E 35 SHEET 5 AA5 6 TYR E 62 CYS E 74 -1 O GLN E 69 N ARG E 47 SHEET 6 AA5 6 SER E 83 PHE E 96 -1 O PHE E 94 N VAL E 64 SSBOND 1 CYS A 74 CYS B 80 1555 1555 2.05 SSBOND 2 CYS A 80 CYS D 74 1555 1555 2.05 SSBOND 3 CYS B 74 CYS E 80 1555 1555 2.05 SSBOND 4 CYS C 74 CYS D 80 1555 1555 2.17 SSBOND 5 CYS C 80 CYS E 74 1555 1555 2.06 CRYST1 194.143 194.143 194.143 90.00 90.00 90.00 I 2 3 120 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005151 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005151 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005151 0.00000