HEADER NEUROPEPTIDE 19-JAN-22 7TMC TITLE TMEM106B SINGLET FILAMENT EXTRACTED FROM MSTD NEURODEGENERATIVE HUMAN TITLE 2 BRAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSMEMBRANE PROTEIN 106B; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TMEM106B; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS TMEM106B, TMEM FILAMENT, MSTD, NEUROPEPTIDE EXPDTA ELECTRON MICROSCOPY AUTHOR M.R.HOQ,S.R.BHARATH,W.JIANG REVDAT 3 22-NOV-23 7TMC 1 REMARK SHEET SSBOND LINK REVDAT 3 2 1 ATOM REVDAT 2 09-AUG-23 7TMC 1 JRNL REVDAT 1 25-JAN-23 7TMC 0 JRNL AUTH M.R.HOQ,S.R.BHARATH,G.I.HALLINAN,A.FERNANDEZ,F.S.VAGO, JRNL AUTH 2 K.A.OZCAN,D.LI,H.J.GARRINGER,R.VIDAL,B.GHETTI,W.JIANG JRNL TITL CROSS-BETA HELICAL FILAMENTS OF TAU AND TMEM106B IN GRAY AND JRNL TITL 2 WHITE MATTER OF MULTIPLE SYSTEM TAUOPATHY WITH PRESENILE JRNL TITL 3 DEMENTIA. JRNL REF ACTA NEUROPATHOL V. 145 707 2023 JRNL REFN ESSN 1432-0533 JRNL PMID 36952000 JRNL DOI 10.1007/S00401-023-02563-3 REMARK 2 REMARK 2 RESOLUTION. 3.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION, CTFFIND REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.250 REMARK 3 NUMBER OF PARTICLES : 16484 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7TMC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1000261906. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : HELICAL REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : FILAMENT REMARK 245 PARTICLE TYPE : HELICAL REMARK 245 NAME OF SAMPLE : TMEM106B REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 1.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.20 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 5000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5046.00 REMARK 245 ILLUMINATION MODE : SPOT SCAN REMARK 245 NOMINAL MAGNIFICATION : 81000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 LYS A 3 REMARK 465 SER A 4 REMARK 465 LEU A 5 REMARK 465 SER A 6 REMARK 465 HIS A 7 REMARK 465 LEU A 8 REMARK 465 PRO A 9 REMARK 465 LEU A 10 REMARK 465 HIS A 11 REMARK 465 SER A 12 REMARK 465 SER A 13 REMARK 465 LYS A 14 REMARK 465 GLU A 15 REMARK 465 ASP A 16 REMARK 465 ALA A 17 REMARK 465 TYR A 18 REMARK 465 ASP A 19 REMARK 465 GLY A 20 REMARK 465 VAL A 21 REMARK 465 THR A 22 REMARK 465 SER A 23 REMARK 465 GLU A 24 REMARK 465 ASN A 25 REMARK 465 MET A 26 REMARK 465 ARG A 27 REMARK 465 ASN A 28 REMARK 465 GLY A 29 REMARK 465 LEU A 30 REMARK 465 VAL A 31 REMARK 465 ASN A 32 REMARK 465 SER A 33 REMARK 465 GLU A 34 REMARK 465 VAL A 35 REMARK 465 HIS A 36 REMARK 465 ASN A 37 REMARK 465 GLU A 38 REMARK 465 ASP A 39 REMARK 465 GLY A 40 REMARK 465 ARG A 41 REMARK 465 ASN A 42 REMARK 465 GLY A 43 REMARK 465 ASP A 44 REMARK 465 VAL A 45 REMARK 465 SER A 46 REMARK 465 GLN A 47 REMARK 465 PHE A 48 REMARK 465 PRO A 49 REMARK 465 TYR A 50 REMARK 465 VAL A 51 REMARK 465 GLU A 52 REMARK 465 PHE A 53 REMARK 465 THR A 54 REMARK 465 GLY A 55 REMARK 465 ARG A 56 REMARK 465 ASP A 57 REMARK 465 SER A 58 REMARK 465 VAL A 59 REMARK 465 THR A 60 REMARK 465 CYS A 61 REMARK 465 PRO A 62 REMARK 465 THR A 63 REMARK 465 CYS A 64 REMARK 465 GLN A 65 REMARK 465 GLY A 66 REMARK 465 THR A 67 REMARK 465 GLY A 68 REMARK 465 ARG A 69 REMARK 465 ILE A 70 REMARK 465 PRO A 71 REMARK 465 ARG A 72 REMARK 465 GLY A 73 REMARK 465 GLN A 74 REMARK 465 GLU A 75 REMARK 465 ASN A 76 REMARK 465 GLN A 77 REMARK 465 LEU A 78 REMARK 465 VAL A 79 REMARK 465 ALA A 80 REMARK 465 LEU A 81 REMARK 465 ILE A 82 REMARK 465 PRO A 83 REMARK 465 TYR A 84 REMARK 465 SER A 85 REMARK 465 ASP A 86 REMARK 465 GLN A 87 REMARK 465 ARG A 88 REMARK 465 LEU A 89 REMARK 465 ARG A 90 REMARK 465 PRO A 91 REMARK 465 ARG A 92 REMARK 465 ARG A 93 REMARK 465 THR A 94 REMARK 465 LYS A 95 REMARK 465 LEU A 96 REMARK 465 TYR A 97 REMARK 465 VAL A 98 REMARK 465 MET A 99 REMARK 465 ALA A 100 REMARK 465 SER A 101 REMARK 465 VAL A 102 REMARK 465 PHE A 103 REMARK 465 VAL A 104 REMARK 465 CYS A 105 REMARK 465 LEU A 106 REMARK 465 LEU A 107 REMARK 465 LEU A 108 REMARK 465 SER A 109 REMARK 465 GLY A 110 REMARK 465 LEU A 111 REMARK 465 ALA A 112 REMARK 465 VAL A 113 REMARK 465 PHE A 114 REMARK 465 PHE A 115 REMARK 465 LEU A 116 REMARK 465 PHE A 117 REMARK 465 PRO A 118 REMARK 465 ARG A 119 REMARK 465 ARG A 255 REMARK 465 ASN A 256 REMARK 465 THR A 257 REMARK 465 THR A 258 REMARK 465 TYR A 259 REMARK 465 GLN A 260 REMARK 465 LEU A 261 REMARK 465 GLY A 262 REMARK 465 GLN A 263 REMARK 465 SER A 264 REMARK 465 GLU A 265 REMARK 465 TYR A 266 REMARK 465 LEU A 267 REMARK 465 ASN A 268 REMARK 465 VAL A 269 REMARK 465 LEU A 270 REMARK 465 GLN A 271 REMARK 465 PRO A 272 REMARK 465 GLN A 273 REMARK 465 GLN A 274 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 LYS B 3 REMARK 465 SER B 4 REMARK 465 LEU B 5 REMARK 465 SER B 6 REMARK 465 HIS B 7 REMARK 465 LEU B 8 REMARK 465 PRO B 9 REMARK 465 LEU B 10 REMARK 465 HIS B 11 REMARK 465 SER B 12 REMARK 465 SER B 13 REMARK 465 LYS B 14 REMARK 465 GLU B 15 REMARK 465 ASP B 16 REMARK 465 ALA B 17 REMARK 465 TYR B 18 REMARK 465 ASP B 19 REMARK 465 GLY B 20 REMARK 465 VAL B 21 REMARK 465 THR B 22 REMARK 465 SER B 23 REMARK 465 GLU B 24 REMARK 465 ASN B 25 REMARK 465 MET B 26 REMARK 465 ARG B 27 REMARK 465 ASN B 28 REMARK 465 GLY B 29 REMARK 465 LEU B 30 REMARK 465 VAL B 31 REMARK 465 ASN B 32 REMARK 465 SER B 33 REMARK 465 GLU B 34 REMARK 465 VAL B 35 REMARK 465 HIS B 36 REMARK 465 ASN B 37 REMARK 465 GLU B 38 REMARK 465 ASP B 39 REMARK 465 GLY B 40 REMARK 465 ARG B 41 REMARK 465 ASN B 42 REMARK 465 GLY B 43 REMARK 465 ASP B 44 REMARK 465 VAL B 45 REMARK 465 SER B 46 REMARK 465 GLN B 47 REMARK 465 PHE B 48 REMARK 465 PRO B 49 REMARK 465 TYR B 50 REMARK 465 VAL B 51 REMARK 465 GLU B 52 REMARK 465 PHE B 53 REMARK 465 THR B 54 REMARK 465 GLY B 55 REMARK 465 ARG B 56 REMARK 465 ASP B 57 REMARK 465 SER B 58 REMARK 465 VAL B 59 REMARK 465 THR B 60 REMARK 465 CYS B 61 REMARK 465 PRO B 62 REMARK 465 THR B 63 REMARK 465 CYS B 64 REMARK 465 GLN B 65 REMARK 465 GLY B 66 REMARK 465 THR B 67 REMARK 465 GLY B 68 REMARK 465 ARG B 69 REMARK 465 ILE B 70 REMARK 465 PRO B 71 REMARK 465 ARG B 72 REMARK 465 GLY B 73 REMARK 465 GLN B 74 REMARK 465 GLU B 75 REMARK 465 ASN B 76 REMARK 465 GLN B 77 REMARK 465 LEU B 78 REMARK 465 VAL B 79 REMARK 465 ALA B 80 REMARK 465 LEU B 81 REMARK 465 ILE B 82 REMARK 465 PRO B 83 REMARK 465 TYR B 84 REMARK 465 SER B 85 REMARK 465 ASP B 86 REMARK 465 GLN B 87 REMARK 465 ARG B 88 REMARK 465 LEU B 89 REMARK 465 ARG B 90 REMARK 465 PRO B 91 REMARK 465 ARG B 92 REMARK 465 ARG B 93 REMARK 465 THR B 94 REMARK 465 LYS B 95 REMARK 465 LEU B 96 REMARK 465 TYR B 97 REMARK 465 VAL B 98 REMARK 465 MET B 99 REMARK 465 ALA B 100 REMARK 465 SER B 101 REMARK 465 VAL B 102 REMARK 465 PHE B 103 REMARK 465 VAL B 104 REMARK 465 CYS B 105 REMARK 465 LEU B 106 REMARK 465 LEU B 107 REMARK 465 LEU B 108 REMARK 465 SER B 109 REMARK 465 GLY B 110 REMARK 465 LEU B 111 REMARK 465 ALA B 112 REMARK 465 VAL B 113 REMARK 465 PHE B 114 REMARK 465 PHE B 115 REMARK 465 LEU B 116 REMARK 465 PHE B 117 REMARK 465 PRO B 118 REMARK 465 ARG B 119 REMARK 465 ARG B 255 REMARK 465 ASN B 256 REMARK 465 THR B 257 REMARK 465 THR B 258 REMARK 465 TYR B 259 REMARK 465 GLN B 260 REMARK 465 LEU B 261 REMARK 465 GLY B 262 REMARK 465 GLN B 263 REMARK 465 SER B 264 REMARK 465 GLU B 265 REMARK 465 TYR B 266 REMARK 465 LEU B 267 REMARK 465 ASN B 268 REMARK 465 VAL B 269 REMARK 465 LEU B 270 REMARK 465 GLN B 271 REMARK 465 PRO B 272 REMARK 465 GLN B 273 REMARK 465 GLN B 274 REMARK 465 MET C 1 REMARK 465 GLY C 2 REMARK 465 LYS C 3 REMARK 465 SER C 4 REMARK 465 LEU C 5 REMARK 465 SER C 6 REMARK 465 HIS C 7 REMARK 465 LEU C 8 REMARK 465 PRO C 9 REMARK 465 LEU C 10 REMARK 465 HIS C 11 REMARK 465 SER C 12 REMARK 465 SER C 13 REMARK 465 LYS C 14 REMARK 465 GLU C 15 REMARK 465 ASP C 16 REMARK 465 ALA C 17 REMARK 465 TYR C 18 REMARK 465 ASP C 19 REMARK 465 GLY C 20 REMARK 465 VAL C 21 REMARK 465 THR C 22 REMARK 465 SER C 23 REMARK 465 GLU C 24 REMARK 465 ASN C 25 REMARK 465 MET C 26 REMARK 465 ARG C 27 REMARK 465 ASN C 28 REMARK 465 GLY C 29 REMARK 465 LEU C 30 REMARK 465 VAL C 31 REMARK 465 ASN C 32 REMARK 465 SER C 33 REMARK 465 GLU C 34 REMARK 465 VAL C 35 REMARK 465 HIS C 36 REMARK 465 ASN C 37 REMARK 465 GLU C 38 REMARK 465 ASP C 39 REMARK 465 GLY C 40 REMARK 465 ARG C 41 REMARK 465 ASN C 42 REMARK 465 GLY C 43 REMARK 465 ASP C 44 REMARK 465 VAL C 45 REMARK 465 SER C 46 REMARK 465 GLN C 47 REMARK 465 PHE C 48 REMARK 465 PRO C 49 REMARK 465 TYR C 50 REMARK 465 VAL C 51 REMARK 465 GLU C 52 REMARK 465 PHE C 53 REMARK 465 THR C 54 REMARK 465 GLY C 55 REMARK 465 ARG C 56 REMARK 465 ASP C 57 REMARK 465 SER C 58 REMARK 465 VAL C 59 REMARK 465 THR C 60 REMARK 465 CYS C 61 REMARK 465 PRO C 62 REMARK 465 THR C 63 REMARK 465 CYS C 64 REMARK 465 GLN C 65 REMARK 465 GLY C 66 REMARK 465 THR C 67 REMARK 465 GLY C 68 REMARK 465 ARG C 69 REMARK 465 ILE C 70 REMARK 465 PRO C 71 REMARK 465 ARG C 72 REMARK 465 GLY C 73 REMARK 465 GLN C 74 REMARK 465 GLU C 75 REMARK 465 ASN C 76 REMARK 465 GLN C 77 REMARK 465 LEU C 78 REMARK 465 VAL C 79 REMARK 465 ALA C 80 REMARK 465 LEU C 81 REMARK 465 ILE C 82 REMARK 465 PRO C 83 REMARK 465 TYR C 84 REMARK 465 SER C 85 REMARK 465 ASP C 86 REMARK 465 GLN C 87 REMARK 465 ARG C 88 REMARK 465 LEU C 89 REMARK 465 ARG C 90 REMARK 465 PRO C 91 REMARK 465 ARG C 92 REMARK 465 ARG C 93 REMARK 465 THR C 94 REMARK 465 LYS C 95 REMARK 465 LEU C 96 REMARK 465 TYR C 97 REMARK 465 VAL C 98 REMARK 465 MET C 99 REMARK 465 ALA C 100 REMARK 465 SER C 101 REMARK 465 VAL C 102 REMARK 465 PHE C 103 REMARK 465 VAL C 104 REMARK 465 CYS C 105 REMARK 465 LEU C 106 REMARK 465 LEU C 107 REMARK 465 LEU C 108 REMARK 465 SER C 109 REMARK 465 GLY C 110 REMARK 465 LEU C 111 REMARK 465 ALA C 112 REMARK 465 VAL C 113 REMARK 465 PHE C 114 REMARK 465 PHE C 115 REMARK 465 LEU C 116 REMARK 465 PHE C 117 REMARK 465 PRO C 118 REMARK 465 ARG C 119 REMARK 465 ARG C 255 REMARK 465 ASN C 256 REMARK 465 THR C 257 REMARK 465 THR C 258 REMARK 465 TYR C 259 REMARK 465 GLN C 260 REMARK 465 LEU C 261 REMARK 465 GLY C 262 REMARK 465 GLN C 263 REMARK 465 SER C 264 REMARK 465 GLU C 265 REMARK 465 TYR C 266 REMARK 465 LEU C 267 REMARK 465 ASN C 268 REMARK 465 VAL C 269 REMARK 465 LEU C 270 REMARK 465 GLN C 271 REMARK 465 PRO C 272 REMARK 465 GLN C 273 REMARK 465 GLN C 274 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 231 OG1 THR A 234 2.13 REMARK 500 OG1 THR B 231 OG1 THR B 234 2.13 REMARK 500 OG1 THR C 231 OG1 THR C 234 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 187 CG1 - CB - CG2 ANGL. DEV. = -19.1 DEGREES REMARK 500 LEU A 190 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 ILE B 187 CG1 - CB - CG2 ANGL. DEV. = -19.1 DEGREES REMARK 500 LEU B 190 CA - CB - CG ANGL. DEV. = 13.8 DEGREES REMARK 500 ILE C 187 CG1 - CB - CG2 ANGL. DEV. = -19.0 DEGREES REMARK 500 LEU C 190 CA - CB - CG ANGL. DEV. = 13.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 128 -60.68 -124.36 REMARK 500 TYR A 135 59.79 -96.34 REMARK 500 GLN A 138 -157.34 -129.35 REMARK 500 LEU A 144 -63.64 -97.96 REMARK 500 GLU A 161 62.48 29.95 REMARK 500 LEU A 190 117.27 -162.83 REMARK 500 LYS A 220 126.83 -32.83 REMARK 500 PHE A 237 114.65 -162.94 REMARK 500 VAL B 128 -60.61 -124.37 REMARK 500 TYR B 135 59.85 -96.37 REMARK 500 GLN B 138 -157.36 -129.30 REMARK 500 LEU B 144 -63.72 -97.99 REMARK 500 GLU B 161 62.43 29.95 REMARK 500 LEU B 190 117.28 -162.90 REMARK 500 LYS B 220 126.89 -32.93 REMARK 500 PHE B 237 114.66 -162.88 REMARK 500 VAL C 128 -60.67 -124.35 REMARK 500 TYR C 135 59.81 -96.32 REMARK 500 GLN C 138 -157.30 -129.36 REMARK 500 LEU C 144 -63.72 -98.04 REMARK 500 GLU C 161 62.43 30.04 REMARK 500 LEU C 190 117.31 -162.95 REMARK 500 LYS C 220 126.84 -32.94 REMARK 500 PHE C 237 114.89 -162.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-25995 RELATED DB: EMDB REMARK 900 TMEM106B SINGLET FILAMENT EXTRACTED FROM MSTD NEURODEGENERATIVE REMARK 900 HUMAN BRAIN DBREF 7TMC A 1 274 UNP Q9NUM4 T106B_HUMAN 1 274 DBREF 7TMC B 1 274 UNP Q9NUM4 T106B_HUMAN 1 274 DBREF 7TMC C 1 274 UNP Q9NUM4 T106B_HUMAN 1 274 SEQRES 1 A 274 MET GLY LYS SER LEU SER HIS LEU PRO LEU HIS SER SER SEQRES 2 A 274 LYS GLU ASP ALA TYR ASP GLY VAL THR SER GLU ASN MET SEQRES 3 A 274 ARG ASN GLY LEU VAL ASN SER GLU VAL HIS ASN GLU ASP SEQRES 4 A 274 GLY ARG ASN GLY ASP VAL SER GLN PHE PRO TYR VAL GLU SEQRES 5 A 274 PHE THR GLY ARG ASP SER VAL THR CYS PRO THR CYS GLN SEQRES 6 A 274 GLY THR GLY ARG ILE PRO ARG GLY GLN GLU ASN GLN LEU SEQRES 7 A 274 VAL ALA LEU ILE PRO TYR SER ASP GLN ARG LEU ARG PRO SEQRES 8 A 274 ARG ARG THR LYS LEU TYR VAL MET ALA SER VAL PHE VAL SEQRES 9 A 274 CYS LEU LEU LEU SER GLY LEU ALA VAL PHE PHE LEU PHE SEQRES 10 A 274 PRO ARG SER ILE ASP VAL LYS TYR ILE GLY VAL LYS SER SEQRES 11 A 274 ALA TYR VAL SER TYR ASP VAL GLN LYS ARG THR ILE TYR SEQRES 12 A 274 LEU ASN ILE THR ASN THR LEU ASN ILE THR ASN ASN ASN SEQRES 13 A 274 TYR TYR SER VAL GLU VAL GLU ASN ILE THR ALA GLN VAL SEQRES 14 A 274 GLN PHE SER LYS THR VAL ILE GLY LYS ALA ARG LEU ASN SEQRES 15 A 274 ASN ILE THR ILE ILE GLY PRO LEU ASP MET LYS GLN ILE SEQRES 16 A 274 ASP TYR THR VAL PRO THR VAL ILE ALA GLU GLU MET SER SEQRES 17 A 274 TYR MET TYR ASP PHE CYS THR LEU ILE SER ILE LYS VAL SEQRES 18 A 274 HIS ASN ILE VAL LEU MET MET GLN VAL THR VAL THR THR SEQRES 19 A 274 THR TYR PHE GLY HIS SER GLU GLN ILE SER GLN GLU ARG SEQRES 20 A 274 TYR GLN TYR VAL ASP CYS GLY ARG ASN THR THR TYR GLN SEQRES 21 A 274 LEU GLY GLN SER GLU TYR LEU ASN VAL LEU GLN PRO GLN SEQRES 22 A 274 GLN SEQRES 1 B 274 MET GLY LYS SER LEU SER HIS LEU PRO LEU HIS SER SER SEQRES 2 B 274 LYS GLU ASP ALA TYR ASP GLY VAL THR SER GLU ASN MET SEQRES 3 B 274 ARG ASN GLY LEU VAL ASN SER GLU VAL HIS ASN GLU ASP SEQRES 4 B 274 GLY ARG ASN GLY ASP VAL SER GLN PHE PRO TYR VAL GLU SEQRES 5 B 274 PHE THR GLY ARG ASP SER VAL THR CYS PRO THR CYS GLN SEQRES 6 B 274 GLY THR GLY ARG ILE PRO ARG GLY GLN GLU ASN GLN LEU SEQRES 7 B 274 VAL ALA LEU ILE PRO TYR SER ASP GLN ARG LEU ARG PRO SEQRES 8 B 274 ARG ARG THR LYS LEU TYR VAL MET ALA SER VAL PHE VAL SEQRES 9 B 274 CYS LEU LEU LEU SER GLY LEU ALA VAL PHE PHE LEU PHE SEQRES 10 B 274 PRO ARG SER ILE ASP VAL LYS TYR ILE GLY VAL LYS SER SEQRES 11 B 274 ALA TYR VAL SER TYR ASP VAL GLN LYS ARG THR ILE TYR SEQRES 12 B 274 LEU ASN ILE THR ASN THR LEU ASN ILE THR ASN ASN ASN SEQRES 13 B 274 TYR TYR SER VAL GLU VAL GLU ASN ILE THR ALA GLN VAL SEQRES 14 B 274 GLN PHE SER LYS THR VAL ILE GLY LYS ALA ARG LEU ASN SEQRES 15 B 274 ASN ILE THR ILE ILE GLY PRO LEU ASP MET LYS GLN ILE SEQRES 16 B 274 ASP TYR THR VAL PRO THR VAL ILE ALA GLU GLU MET SER SEQRES 17 B 274 TYR MET TYR ASP PHE CYS THR LEU ILE SER ILE LYS VAL SEQRES 18 B 274 HIS ASN ILE VAL LEU MET MET GLN VAL THR VAL THR THR SEQRES 19 B 274 THR TYR PHE GLY HIS SER GLU GLN ILE SER GLN GLU ARG SEQRES 20 B 274 TYR GLN TYR VAL ASP CYS GLY ARG ASN THR THR TYR GLN SEQRES 21 B 274 LEU GLY GLN SER GLU TYR LEU ASN VAL LEU GLN PRO GLN SEQRES 22 B 274 GLN SEQRES 1 C 274 MET GLY LYS SER LEU SER HIS LEU PRO LEU HIS SER SER SEQRES 2 C 274 LYS GLU ASP ALA TYR ASP GLY VAL THR SER GLU ASN MET SEQRES 3 C 274 ARG ASN GLY LEU VAL ASN SER GLU VAL HIS ASN GLU ASP SEQRES 4 C 274 GLY ARG ASN GLY ASP VAL SER GLN PHE PRO TYR VAL GLU SEQRES 5 C 274 PHE THR GLY ARG ASP SER VAL THR CYS PRO THR CYS GLN SEQRES 6 C 274 GLY THR GLY ARG ILE PRO ARG GLY GLN GLU ASN GLN LEU SEQRES 7 C 274 VAL ALA LEU ILE PRO TYR SER ASP GLN ARG LEU ARG PRO SEQRES 8 C 274 ARG ARG THR LYS LEU TYR VAL MET ALA SER VAL PHE VAL SEQRES 9 C 274 CYS LEU LEU LEU SER GLY LEU ALA VAL PHE PHE LEU PHE SEQRES 10 C 274 PRO ARG SER ILE ASP VAL LYS TYR ILE GLY VAL LYS SER SEQRES 11 C 274 ALA TYR VAL SER TYR ASP VAL GLN LYS ARG THR ILE TYR SEQRES 12 C 274 LEU ASN ILE THR ASN THR LEU ASN ILE THR ASN ASN ASN SEQRES 13 C 274 TYR TYR SER VAL GLU VAL GLU ASN ILE THR ALA GLN VAL SEQRES 14 C 274 GLN PHE SER LYS THR VAL ILE GLY LYS ALA ARG LEU ASN SEQRES 15 C 274 ASN ILE THR ILE ILE GLY PRO LEU ASP MET LYS GLN ILE SEQRES 16 C 274 ASP TYR THR VAL PRO THR VAL ILE ALA GLU GLU MET SER SEQRES 17 C 274 TYR MET TYR ASP PHE CYS THR LEU ILE SER ILE LYS VAL SEQRES 18 C 274 HIS ASN ILE VAL LEU MET MET GLN VAL THR VAL THR THR SEQRES 19 C 274 THR TYR PHE GLY HIS SER GLU GLN ILE SER GLN GLU ARG SEQRES 20 C 274 TYR GLN TYR VAL ASP CYS GLY ARG ASN THR THR TYR GLN SEQRES 21 C 274 LEU GLY GLN SER GLU TYR LEU ASN VAL LEU GLN PRO GLN SEQRES 22 C 274 GLN HET NAG A 301 14 HET NAG A 302 14 HET NAG A 303 14 HET NAG A 304 14 HET NAG B 301 14 HET NAG B 302 14 HET NAG B 303 14 HET NAG B 304 14 HET NAG C 301 14 HET NAG C 302 14 HET NAG C 303 14 HET NAG C 304 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NAG 12(C8 H15 N O6) SHEET 1 AA1 3 LYS B 124 TYR B 125 0 SHEET 2 AA1 3 LYS A 124 TYR A 125 1 N LYS A 124 O TYR B 125 SHEET 3 AA1 3 LYS C 124 TYR C 125 1 O LYS C 124 N TYR A 125 SHEET 1 AA2 3 LYS B 129 SER B 134 0 SHEET 2 AA2 3 LYS A 129 SER A 134 1 N VAL A 133 O TYR B 132 SHEET 3 AA2 3 LYS C 129 SER C 134 1 O VAL C 133 N TYR A 132 SHEET 1 AA3 3 ILE B 142 TYR B 143 0 SHEET 2 AA3 3 ILE A 142 TYR A 143 1 N TYR A 143 O ILE B 142 SHEET 3 AA3 3 ILE C 142 TYR C 143 1 O TYR C 143 N ILE A 142 SHEET 1 AA4 3 ILE B 152 THR B 153 0 SHEET 2 AA4 3 ILE A 152 THR A 153 1 N ILE A 152 O THR B 153 SHEET 3 AA4 3 ILE C 152 THR C 153 1 O ILE C 152 N THR A 153 SHEET 1 AA5 3 ASN B 156 TYR B 158 0 SHEET 2 AA5 3 ASN A 156 TYR A 158 1 N TYR A 158 O TYR B 157 SHEET 3 AA5 3 ASN C 156 TYR C 158 1 O TYR C 158 N TYR A 157 SHEET 1 AA6 3 VAL B 169 VAL B 175 0 SHEET 2 AA6 3 VAL A 169 VAL A 175 1 N GLN A 170 O PHE B 171 SHEET 3 AA6 3 VAL C 169 VAL C 175 1 O GLN C 170 N PHE A 171 SHEET 1 AA7 3 ARG B 180 LEU B 181 0 SHEET 2 AA7 3 ARG A 180 LEU A 181 1 N LEU A 181 O ARG B 180 SHEET 3 AA7 3 ARG C 180 LEU C 181 1 O LEU C 181 N ARG A 180 SHEET 1 AA8 3 ILE B 184 ILE B 186 0 SHEET 2 AA8 3 ILE A 184 ILE A 186 1 N ILE A 184 O THR B 185 SHEET 3 AA8 3 ILE C 184 ILE C 186 1 O ILE C 184 N THR A 185 SHEET 1 AA9 3 ASP B 191 LYS B 193 0 SHEET 2 AA9 3 ASP A 191 LYS A 193 1 N MET A 192 O ASP B 191 SHEET 3 AA9 3 ASP C 191 LYS C 193 1 O MET C 192 N ASP A 191 SHEET 1 AB1 3 ASP B 196 TYR B 197 0 SHEET 2 AB1 3 ASP A 196 TYR A 197 1 N TYR A 197 O ASP B 196 SHEET 3 AB1 3 ASP C 196 TYR C 197 1 O TYR C 197 N ASP A 196 SHEET 1 AB2 3 VAL B 202 GLU B 206 0 SHEET 2 AB2 3 VAL A 202 GLU A 206 1 N ILE A 203 O VAL B 202 SHEET 3 AB2 3 VAL C 202 GLU C 206 1 O ILE C 203 N VAL A 202 SHEET 1 AB3 3 TYR B 209 PHE B 213 0 SHEET 2 AB3 3 TYR A 209 PHE A 213 1 N ASP A 212 O TYR B 211 SHEET 3 AB3 3 TYR C 209 PHE C 213 1 O ASP C 212 N TYR A 211 SHEET 1 AB4 3 LEU B 216 SER B 218 0 SHEET 2 AB4 3 LEU A 216 SER A 218 1 N ILE A 217 O SER B 218 SHEET 3 AB4 3 LEU C 216 SER C 218 1 O ILE C 217 N SER A 218 SHEET 1 AB5 3 ILE B 224 MET B 228 0 SHEET 2 AB5 3 ILE A 224 MET A 228 1 N VAL A 225 O LEU B 226 SHEET 3 AB5 3 ILE C 224 MET C 228 1 O VAL C 225 N LEU A 226 SHEET 1 AB6 3 THR B 233 THR B 235 0 SHEET 2 AB6 3 THR A 233 THR A 235 1 N THR A 235 O THR B 234 SHEET 3 AB6 3 THR C 233 THR C 235 1 O THR C 235 N THR A 234 SHEET 1 AB7 3 GLY B 238 GLN B 245 0 SHEET 2 AB7 3 GLY A 238 GLN A 245 1 N GLN A 245 O SER B 244 SHEET 3 AB7 3 GLY C 238 GLN C 245 1 O GLN C 245 N SER A 244 SSBOND 1 CYS A 214 CYS A 253 1555 1555 2.03 SSBOND 2 CYS B 214 CYS B 253 1555 1555 2.03 SSBOND 3 CYS C 214 CYS C 253 1555 1555 2.03 LINK ND2 ASN A 145 C1 NAG A 302 1555 1555 1.44 LINK ND2 ASN A 151 C1 NAG A 301 1555 1555 1.44 LINK ND2 ASN A 164 C1 NAG A 303 1555 1555 1.45 LINK ND2 ASN A 183 C1 NAG A 304 1555 1555 1.45 LINK ND2 ASN B 145 C1 NAG B 302 1555 1555 1.44 LINK ND2 ASN B 151 C1 NAG B 301 1555 1555 1.44 LINK ND2 ASN B 164 C1 NAG B 303 1555 1555 1.46 LINK ND2 ASN B 183 C1 NAG B 304 1555 1555 1.45 LINK ND2 ASN C 145 C1 NAG C 302 1555 1555 1.44 LINK ND2 ASN C 151 C1 NAG C 301 1555 1555 1.44 LINK ND2 ASN C 164 C1 NAG C 303 1555 1555 1.45 LINK ND2 ASN C 183 C1 NAG C 304 1555 1555 1.45 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000