HEADER OXIDOREDUCTASE 24-JAN-22 7TOM TITLE X-RAY CRYSTAL STRUCTURE OF GLYCEROL DIBIPHYTANYL GLYCEROL TETRAETHER - TITLE 2 MACROCYCLIC ARCHAEOL SYNTHASE (GDGT-MAS) FROM METHANOCALDOCOCCUS TITLE 3 JANNASCHII WITH BACTERIAL LIPID SUBSTRATE ANALOG, 5'DEOXYADENOSINE, TITLE 4 AND METHIONINE BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCEROL DIBIPHYTANYL GLYCEROL TETRAETHER - MACROCYCLIC COMPND 3 ARCHAEOL SYNTHASE; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: 7,8-DIHYDRO-6-HYDROXYMETHYLPTERIN DIMETHYLTRANSFERASE, 6- COMPND 6 HYDROXYMETHYL-H(2)PTERIN DIMETHYLTRANSFERASE; COMPND 7 EC: 2.1.1.-; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: THE FIRST 20 RESIDUES ARE FROM A TAG AND ARE DENOTED COMPND 10 WITH NEGATIVE NUMBERS. THE 21ST RESIDUE, METHIONINE, IS THE START OF COMPND 11 THE NATIVE PROTEIN AND HAS SEQUENCE NUMBER 1. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 2190; SOURCE 4 GENE: MJ0619; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS RADICAL SAM ENZYME, BIPHYTANYL CHAIN, GLYCEROL DIBIPHYTANYL GLYCEROL KEYWDS 2 TETRAETHER, ARCHAEAL LIPID MODIFICATION, [4FE-4S] CLUSTER, KEYWDS 3 RUBREDOXIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.T.LLOYD,S.J.BOOKER,A.K.BOAL REVDAT 2 14-SEP-22 7TOM 1 JRNL REVDAT 1 31-AUG-22 7TOM 0 JRNL AUTH C.T.LLOYD,D.F.IWIG,B.WANG,M.COSSU,W.W.METCALF,A.K.BOAL, JRNL AUTH 2 S.J.BOOKER JRNL TITL DISCOVERY, STRUCTURE AND MECHANISM OF A TETRAETHER LIPID JRNL TITL 2 SYNTHASE. JRNL REF NATURE V. 609 197 2022 JRNL REFN ESSN 1476-4687 JRNL PMID 35882349 JRNL DOI 10.1038/S41586-022-05120-2 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.5 REMARK 3 NUMBER OF REFLECTIONS : 70348 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 3493 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.5400 - 5.4000 1.00 3054 162 0.1454 0.1683 REMARK 3 2 5.4000 - 4.2900 0.94 2858 155 0.1219 0.1521 REMARK 3 3 4.2900 - 3.7500 0.98 2998 156 0.1247 0.1425 REMARK 3 4 3.7400 - 3.4000 0.99 3044 161 0.1388 0.1980 REMARK 3 5 3.4000 - 3.1600 1.00 3048 155 0.1488 0.2356 REMARK 3 6 3.1600 - 2.9700 1.00 3044 162 0.1540 0.2050 REMARK 3 7 2.9700 - 2.8200 1.00 3060 156 0.1569 0.2188 REMARK 3 8 2.8200 - 2.7000 1.00 3062 159 0.1513 0.2320 REMARK 3 9 2.7000 - 2.6000 0.94 2871 153 0.1646 0.1993 REMARK 3 10 2.6000 - 2.5100 0.95 2852 147 0.1572 0.2213 REMARK 3 11 2.5100 - 2.4300 0.97 3003 152 0.1588 0.2048 REMARK 3 12 2.4300 - 2.3600 0.97 2992 157 0.1475 0.2065 REMARK 3 13 2.3600 - 2.3000 0.98 3001 155 0.1497 0.2258 REMARK 3 14 2.3000 - 2.2400 0.98 2978 153 0.1541 0.2231 REMARK 3 15 2.2400 - 2.1900 0.98 3004 156 0.1492 0.2254 REMARK 3 16 2.1900 - 2.1400 0.97 2939 153 0.1601 0.1894 REMARK 3 17 2.1400 - 2.1000 0.95 2937 155 0.1671 0.2156 REMARK 3 18 2.1000 - 2.0600 0.90 2720 148 0.1719 0.2136 REMARK 3 19 2.0600 - 2.0200 0.85 2576 125 0.1776 0.2401 REMARK 3 20 2.0200 - 1.9900 0.78 2365 128 0.1661 0.2459 REMARK 3 21 1.9900 - 1.9600 0.73 2243 125 0.1762 0.2283 REMARK 3 22 1.9600 - 1.9300 0.66 2013 98 0.1766 0.2015 REMARK 3 23 1.9300 - 1.9000 0.58 1800 91 0.1942 0.2165 REMARK 3 24 1.9000 - 1.8700 0.47 1425 76 0.2003 0.2039 REMARK 3 25 1.8700 - 1.8500 0.32 968 55 0.2180 0.2626 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID -2:86 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.606 42.325 24.713 REMARK 3 T TENSOR REMARK 3 T11: 0.0207 T22: 0.0600 REMARK 3 T33: 0.1119 T12: 0.0164 REMARK 3 T13: 0.0409 T23: -0.0711 REMARK 3 L TENSOR REMARK 3 L11: 0.1997 L22: 0.5600 REMARK 3 L33: 0.3429 L12: -0.1213 REMARK 3 L13: 0.1458 L23: -0.1684 REMARK 3 S TENSOR REMARK 3 S11: -0.0226 S12: 0.0985 S13: -0.2053 REMARK 3 S21: -0.3594 S22: 0.0550 S23: 0.3725 REMARK 3 S31: 0.2798 S32: -0.2394 S33: 0.0716 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 87:351 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.885 53.628 39.124 REMARK 3 T TENSOR REMARK 3 T11: 0.0768 T22: 0.0719 REMARK 3 T33: 0.0390 T12: -0.0148 REMARK 3 T13: -0.0220 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 0.7900 L22: 1.0948 REMARK 3 L33: 0.5494 L12: -0.3191 REMARK 3 L13: 0.1009 L23: -0.2516 REMARK 3 S TENSOR REMARK 3 S11: -0.0760 S12: 0.0371 S13: 0.0344 REMARK 3 S21: 0.1779 S22: 0.0123 S23: -0.1263 REMARK 3 S31: -0.0666 S32: 0.0918 S33: -0.2276 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 352:439 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.956 32.276 51.523 REMARK 3 T TENSOR REMARK 3 T11: 0.3197 T22: 0.2005 REMARK 3 T33: 0.1938 T12: 0.0709 REMARK 3 T13: 0.0169 T23: 0.0574 REMARK 3 L TENSOR REMARK 3 L11: 0.0427 L22: 0.0403 REMARK 3 L33: 0.4208 L12: 0.0322 REMARK 3 L13: -0.0312 L23: -0.0351 REMARK 3 S TENSOR REMARK 3 S11: -0.0590 S12: -0.2276 S13: -0.1977 REMARK 3 S21: 0.2573 S22: 0.0816 S23: 0.0692 REMARK 3 S31: 0.2252 S32: 0.1926 S33: 0.0295 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND ( RESID 440:501 OR RESID 601:606 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.562 61.588 32.529 REMARK 3 T TENSOR REMARK 3 T11: 0.1016 T22: 0.0651 REMARK 3 T33: 0.0887 T12: 0.0207 REMARK 3 T13: -0.0012 T23: 0.0358 REMARK 3 L TENSOR REMARK 3 L11: 0.3843 L22: 0.0836 REMARK 3 L33: 0.1644 L12: -0.0828 REMARK 3 L13: -0.1315 L23: 0.0041 REMARK 3 S TENSOR REMARK 3 S11: -0.0576 S12: 0.2315 S13: 0.0596 REMARK 3 S21: -0.0870 S22: 0.0680 S23: 0.0708 REMARK 3 S31: -0.0947 S32: -0.1311 S33: -0.0045 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7TOM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-22. REMARK 100 THE DEPOSITION ID IS D_1000259559. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03320 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70348 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM THIOCYANATE, PEG 3350, REMARK 280 5'DEOXYADENOSINE, METHIONINE, PH 6.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.80450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.40850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.57900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.40850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.80450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.57900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A 376 REMARK 465 LYS A 377 REMARK 465 SER A 378 REMARK 465 LYS A 379 REMARK 465 MET A 380 REMARK 465 HIS A 381 REMARK 465 ASP A 502 REMARK 465 ARG A 503 REMARK 465 GLU A 504 REMARK 465 ASP A 505 REMARK 465 TYR A 506 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 838 O HOH A 1077 2.04 REMARK 500 O HOH A 886 O HOH A 927 2.11 REMARK 500 O HOH A 1030 O HOH A 1077 2.13 REMARK 500 O HOH A 734 O HOH A 1035 2.15 REMARK 500 O3 LPP A 608 O HOH A 701 2.17 REMARK 500 O HOH A 748 O HOH A 1047 2.17 REMARK 500 O HOH A 968 O HOH A 1024 2.18 REMARK 500 OE2 GLU A 305 O HOH A 702 2.18 REMARK 500 O HOH A 1033 O HOH A 1061 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 70 -58.29 -142.28 REMARK 500 PRO A 74 35.48 -99.61 REMARK 500 ASN A 101 56.36 -140.50 REMARK 500 VAL A 243 -56.79 -126.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1091 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH A1092 DISTANCE = 6.68 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 LPP A 609 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 601 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 9 SG REMARK 620 2 CYS A 12 SG 108.5 REMARK 620 3 CYS A 33 SG 107.6 112.3 REMARK 620 4 HIS A 36 ND1 114.2 109.5 104.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 603 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 73 SG REMARK 620 2 SF4 A 603 S1 118.0 REMARK 620 3 SF4 A 603 S2 114.7 102.5 REMARK 620 4 SF4 A 603 S4 109.8 105.1 105.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 603 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 77 SG REMARK 620 2 SF4 A 603 S2 112.4 REMARK 620 3 SF4 A 603 S3 120.6 103.0 REMARK 620 4 SF4 A 603 S4 107.0 106.8 106.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 603 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 80 SG REMARK 620 2 SF4 A 603 S1 102.6 REMARK 620 3 SF4 A 603 S2 121.2 102.9 REMARK 620 4 SF4 A 603 S3 115.8 109.0 104.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 603 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 83 ND1 REMARK 620 2 SF4 A 603 S1 118.5 REMARK 620 3 SF4 A 603 S3 107.7 108.6 REMARK 620 4 SF4 A 603 S4 113.1 103.8 104.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 602 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 98 SG REMARK 620 2 SF4 A 602 S2 120.9 REMARK 620 3 SF4 A 602 S3 97.8 104.3 REMARK 620 4 SF4 A 602 S4 120.8 105.5 104.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 602 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 102 SG REMARK 620 2 SF4 A 602 S1 121.0 REMARK 620 3 SF4 A 602 S3 115.7 101.1 REMARK 620 4 SF4 A 602 S4 102.5 107.9 108.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 602 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 105 SG REMARK 620 2 SF4 A 602 S1 111.2 REMARK 620 3 SF4 A 602 S2 118.5 104.8 REMARK 620 4 SF4 A 602 S4 110.0 106.9 104.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 604 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 338 SG REMARK 620 2 SF4 A 604 S1 124.9 REMARK 620 3 SF4 A 604 S3 110.5 100.5 REMARK 620 4 SF4 A 604 S4 109.3 102.7 107.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 604 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 455 SG REMARK 620 2 SF4 A 604 S1 112.7 REMARK 620 3 SF4 A 604 S2 107.6 107.2 REMARK 620 4 SF4 A 604 S3 123.0 101.1 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 604 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 470 SG REMARK 620 2 SF4 A 604 S1 112.1 REMARK 620 3 SF4 A 604 S2 113.5 108.9 REMARK 620 4 SF4 A 604 S4 119.6 101.4 100.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 602 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 606 N REMARK 620 2 SF4 A 602 S1 168.1 REMARK 620 3 SF4 A 602 S2 84.1 100.4 REMARK 620 4 SF4 A 602 S3 89.8 100.0 101.1 REMARK 620 5 MET A 606 O 73.4 99.9 155.3 89.0 REMARK 620 6 MET A 606 SD 82.3 86.6 91.0 164.8 76.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 604 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SCN A 607 S REMARK 620 2 SF4 A 604 S2 122.2 REMARK 620 3 SF4 A 604 S3 107.1 102.8 REMARK 620 4 SF4 A 604 S4 110.7 103.7 109.8 REMARK 620 N 1 2 3 DBREF 7TOM A 1 506 UNP Q58036 HMPTM_METJA 1 506 SEQADV 7TOM MET A -19 UNP Q58036 INITIATING METHIONINE SEQADV 7TOM GLY A -18 UNP Q58036 EXPRESSION TAG SEQADV 7TOM SER A -17 UNP Q58036 EXPRESSION TAG SEQADV 7TOM SER A -16 UNP Q58036 EXPRESSION TAG SEQADV 7TOM HIS A -15 UNP Q58036 EXPRESSION TAG SEQADV 7TOM HIS A -14 UNP Q58036 EXPRESSION TAG SEQADV 7TOM HIS A -13 UNP Q58036 EXPRESSION TAG SEQADV 7TOM HIS A -12 UNP Q58036 EXPRESSION TAG SEQADV 7TOM HIS A -11 UNP Q58036 EXPRESSION TAG SEQADV 7TOM HIS A -10 UNP Q58036 EXPRESSION TAG SEQADV 7TOM SER A -9 UNP Q58036 EXPRESSION TAG SEQADV 7TOM SER A -8 UNP Q58036 EXPRESSION TAG SEQADV 7TOM GLY A -7 UNP Q58036 EXPRESSION TAG SEQADV 7TOM LEU A -6 UNP Q58036 EXPRESSION TAG SEQADV 7TOM VAL A -5 UNP Q58036 EXPRESSION TAG SEQADV 7TOM PRO A -4 UNP Q58036 EXPRESSION TAG SEQADV 7TOM ARG A -3 UNP Q58036 EXPRESSION TAG SEQADV 7TOM GLY A -2 UNP Q58036 EXPRESSION TAG SEQADV 7TOM SER A -1 UNP Q58036 EXPRESSION TAG SEQADV 7TOM HIS A 0 UNP Q58036 EXPRESSION TAG SEQRES 1 A 526 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 526 LEU VAL PRO ARG GLY SER HIS MET GLU LYS LYS THR LEU SEQRES 3 A 526 SER LEU CYS PRO ILE CYS LEU LYS ARG ILE PRO ALA THR SEQRES 4 A 526 ILE LEU GLU GLU ASP GLY LYS ILE ILE ILE LYS LYS THR SEQRES 5 A 526 CYS PRO GLU HIS GLY GLU PHE LYS ASP ILE TYR TRP GLY SEQRES 6 A 526 ASP ALA GLU LEU TYR LYS LYS PHE ASP LYS TYR GLU PHE SEQRES 7 A 526 ILE GLY LYS ILE GLU VAL THR ASN THR LYS VAL LYS ASN SEQRES 8 A 526 GLY CYS PRO TYR ASP CYS GLY LEU CYS PRO ASN HIS LYS SEQRES 9 A 526 SER THR THR ILE LEU ALA ASN ILE ASP VAL THR ASN ARG SEQRES 10 A 526 CYS ASN LEU ASN CYS PRO ILE CYS PHE ALA ASN ALA ASN SEQRES 11 A 526 LYS SER GLY LYS VAL TYR GLU PRO SER PHE GLU ASP ILE SEQRES 12 A 526 LYS ARG MET MET GLU ASN LEU ARG LYS GLU ILE PRO PRO SEQRES 13 A 526 THR PRO ALA ILE GLN PHE ALA GLY GLY GLU PRO THR VAL SEQRES 14 A 526 ARG SER ASP LEU PRO GLU LEU ILE LYS LEU ALA ARG ASP SEQRES 15 A 526 MET GLY PHE LEU HIS VAL GLN LEU ALA THR ASN GLY ILE SEQRES 16 A 526 LYS LEU LYS ASN ILE ASN TYR LEU LYS LYS LEU LYS GLU SEQRES 17 A 526 ALA GLY LEU SER THR ILE TYR LEU GLN PHE ASP GLY ILE SEQRES 18 A 526 SER GLU LYS PRO TYR LEU VAL ALA ARG GLY LYS ASN LEU SEQRES 19 A 526 LEU PRO ILE LYS GLN LYS VAL ILE GLU ASN CYS LYS LYS SEQRES 20 A 526 VAL GLY PHE ASP SER VAL VAL LEU VAL PRO THR LEU VAL SEQRES 21 A 526 ARG GLY VAL ASN ASP ASN GLU VAL GLY GLY ILE ILE ARG SEQRES 22 A 526 TYR ALA ALA GLU ASN VAL ASP VAL VAL ARG GLY ILE ASN SEQRES 23 A 526 PHE GLN PRO VAL SER PHE THR GLY ARG VAL ASP GLU LYS SEQRES 24 A 526 THR LEU LEU GLU GLY ARG ILE THR ILE PRO ASP PHE ILE SEQRES 25 A 526 LYS LEU VAL GLU GLU GLN THR ASP GLY GLU ILE THR GLU SEQRES 26 A 526 GLU ASP PHE TYR PRO VAL PRO SER VAL ALA PRO ILE SER SEQRES 27 A 526 VAL LEU VAL GLU LYS LEU THR ASN ASP ARG LYS PRO THR SEQRES 28 A 526 LEU SER SER HIS GLN HIS CYS GLY THR SER THR TYR VAL SEQRES 29 A 526 PHE VAL ASP GLU ASP GLY LYS LEU ILE PRO ILE THR ARG SEQRES 30 A 526 PHE ILE ASP VAL GLU GLY PHE LEU GLU ILE VAL LYS GLU SEQRES 31 A 526 LYS ILE GLU GLU ILE GLY LYS SER LYS MET HIS ASP VAL SEQRES 32 A 526 LYS VAL LEU GLY GLU ILE ALA LEU LYS LEU PRO SER LEU SEQRES 33 A 526 ILE ASP LEU ASP LYS ALA PRO LYS SER VAL ASN ILE LYS SEQRES 34 A 526 LYS ILE ILE ASP LEU ILE LEU SER VAL LEU LYS SER ASP SEQRES 35 A 526 TYR SER ALA LEU ALA GLU LEU HIS TYR HIS MET LEU MET SEQRES 36 A 526 ILE SER CYS MET HIS PHE MET ASP ALA TYR ASN PHE ASP SEQRES 37 A 526 VAL LYS ARG VAL MET ARG CYS CYS ILE HIS TYR ALA THR SEQRES 38 A 526 PRO ASP ASP ARG ILE ILE PRO PHE CYS THR TYR ASN THR SEQRES 39 A 526 LEU HIS ARG GLN GLU VAL GLU GLU LYS PHE SER ILE PRO SEQRES 40 A 526 LEU GLU GLU TRP LYS ARG MET HIS LYS ILE GLY GLY GLU SEQRES 41 A 526 ASP ASP ARG GLU ASP TYR HET FE A 601 1 HET SF4 A 602 8 HET SF4 A 603 8 HET SF4 A 604 8 HET 5AD A 605 18 HET MET A 606 9 HET SCN A 607 3 HET LPP A 608 44 HET LPP A 609 42 HETNAM FE FE (III) ION HETNAM SF4 IRON/SULFUR CLUSTER HETNAM 5AD 5'-DEOXYADENOSINE HETNAM MET METHIONINE HETNAM SCN THIOCYANATE ION HETNAM LPP 2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HETNAM 2 LPP HEXADECANOATE HETSYN LPP 1,2-DIPALMITOYL-SN-GLYCERO-3-PHOSPHATE; L-B,G- HETSYN 2 LPP DIPALMITOYL-A-PHOSPHATIDIC ACID DISODIUM SALT; 3-SN- HETSYN 3 LPP PHOSPHATIDIC ACID; 1,2-DIPALMITOYLDISODIUM SALT FORMUL 2 FE FE 3+ FORMUL 3 SF4 3(FE4 S4) FORMUL 6 5AD C10 H13 N5 O3 FORMUL 7 MET C5 H11 N O2 S FORMUL 8 SCN C N S 1- FORMUL 9 LPP 2(C35 H69 O8 P) FORMUL 11 HOH *392(H2 O) HELIX 1 AA1 ASP A 46 LYS A 55 1 10 HELIX 2 AA2 SER A 119 LYS A 132 1 14 HELIX 3 AA3 GLU A 146 ARG A 150 5 5 HELIX 4 AA4 ASP A 152 MET A 163 1 12 HELIX 5 AA5 GLY A 174 LYS A 178 5 5 HELIX 6 AA6 ASN A 179 GLY A 190 1 12 HELIX 7 AA7 SER A 202 GLY A 211 1 10 HELIX 8 AA8 LEU A 214 GLY A 229 1 16 HELIX 9 AA9 ASN A 244 ASN A 246 5 3 HELIX 10 AB1 GLU A 247 ASN A 258 1 12 HELIX 11 AB2 ASP A 277 GLY A 284 1 8 HELIX 12 AB3 THR A 287 THR A 299 1 13 HELIX 13 AB4 THR A 304 PHE A 308 5 5 HELIX 14 AB5 VAL A 314 ASN A 326 1 13 HELIX 15 AB6 ILE A 355 ILE A 359 1 5 HELIX 16 AB7 ASP A 360 GLU A 374 1 15 HELIX 17 AB8 LYS A 384 ILE A 397 1 14 HELIX 18 AB9 ASN A 407 LYS A 420 1 14 HELIX 19 AC1 ASP A 422 MET A 433 1 12 HELIX 20 AC2 ASP A 448 MET A 453 1 6 HELIX 21 AC3 PHE A 469 HIS A 476 1 8 HELIX 22 AC4 HIS A 476 PHE A 484 1 9 HELIX 23 AC5 LEU A 488 HIS A 495 1 8 SHEET 1 AA1 4 HIS A 0 LEU A 8 0 SHEET 2 AA1 4 ARG A 15 GLU A 23 -1 O ILE A 16 N SER A 7 SHEET 3 AA1 4 LYS A 26 CYS A 33 -1 O ILE A 28 N LEU A 21 SHEET 4 AA1 4 GLY A 37 TRP A 44 -1 O TRP A 44 N ILE A 27 SHEET 1 AA2 5 THR A 238 LEU A 239 0 SHEET 2 AA2 5 VAL A 262 PRO A 269 1 O GLN A 268 N LEU A 239 SHEET 3 AA2 5 LEU A 434 MET A 439 1 O SER A 437 N ILE A 265 SHEET 4 AA2 5 GLY A 339 VAL A 346 -1 N VAL A 344 O LEU A 434 SHEET 5 AA2 5 LEU A 352 PRO A 354 -1 O ILE A 353 N PHE A 345 SHEET 1 AA311 TYR A 309 PRO A 310 0 SHEET 2 AA311 GLY A 339 VAL A 346 -1 O SER A 341 N TYR A 309 SHEET 3 AA311 LEU A 434 MET A 439 -1 O LEU A 434 N VAL A 344 SHEET 4 AA311 VAL A 262 PRO A 269 1 N ILE A 265 O SER A 437 SHEET 5 AA311 VAL A 233 VAL A 236 1 N LEU A 235 O ASN A 266 SHEET 6 AA311 THR A 193 GLN A 197 1 N ILE A 194 O VAL A 234 SHEET 7 AA311 HIS A 167 THR A 172 1 N LEU A 170 O TYR A 195 SHEET 8 AA311 ALA A 139 ALA A 143 1 N ILE A 140 O GLN A 169 SHEET 9 AA311 LEU A 89 ASP A 93 1 N ALA A 90 O ALA A 139 SHEET 10 AA311 ILE A 457 ALA A 460 1 O HIS A 458 N ASN A 91 SHEET 11 AA311 ILE A 466 PRO A 468 -1 O ILE A 467 N TYR A 459 SHEET 1 AA4 2 LYS A 114 TYR A 116 0 SHEET 2 AA4 2 SER A 485 PRO A 487 -1 O ILE A 486 N VAL A 115 LINK SG CYS A 9 FE FE A 601 1555 1555 2.34 LINK SG CYS A 12 FE FE A 601 1555 1555 2.30 LINK SG CYS A 33 FE FE A 601 1555 1555 2.36 LINK ND1 HIS A 36 FE FE A 601 1555 1555 2.12 LINK SG CYS A 73 FE3 SF4 A 603 1555 1555 2.29 LINK SG CYS A 77 FE1 SF4 A 603 1555 1555 2.29 LINK SG CYS A 80 FE4 SF4 A 603 1555 1555 2.30 LINK ND1 HIS A 83 FE2 SF4 A 603 1555 1555 2.00 LINK SG CYS A 98 FE1 SF4 A 602 1555 1555 2.26 LINK SG CYS A 102 FE2 SF4 A 602 1555 1555 2.26 LINK SG CYS A 105 FE3 SF4 A 602 1555 1555 2.30 LINK SG CYS A 338 FE2 SF4 A 604 1555 1555 2.31 LINK SG CYS A 455 FE4 SF4 A 604 1555 1555 2.18 LINK SG CYS A 470 FE3 SF4 A 604 1555 1555 2.11 LINK FE4 SF4 A 602 N MET A 606 1555 1555 2.31 LINK FE4 SF4 A 602 O MET A 606 1555 1555 2.30 LINK FE4 SF4 A 602 SD MET A 606 1555 1555 2.68 LINK FE1 SF4 A 604 S SCN A 607 1555 1555 2.20 CISPEP 1 CYS A 73 PRO A 74 0 4.20 CISPEP 2 CYS A 77 GLY A 78 0 -12.28 CISPEP 3 GLY A 78 LEU A 79 0 -8.68 CISPEP 4 ILE A 134 PRO A 135 0 -8.74 CISPEP 5 GLY A 144 GLY A 145 0 16.65 CRYST1 55.609 77.158 112.817 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017983 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012960 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008864 0.00000