HEADER UNKNOWN FUNCTION 07-FEB-22 7TWE TITLE CRYSTAL STRUCTURE OF THE PUTATIVE OXIDOREDUCTASE OF DUF1479-CONTAINING TITLE 2 PROTEIN FAMILY YPO2976 FROM YERSINIA PESTIS BOUND TO 2-OXO-GLUTARIC TITLE 3 ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUF1479 DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS CO92; SOURCE 3 ORGANISM_TAXID: 214092; SOURCE 4 STRAIN: CO92; SOURCE 5 GENE: YPO2976; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: GOLD KEYWDS UNCHARACTERIZED PROTEIN, OXIDOREDUCTASE, STRUCTURAL GENOMICS, CENTER KEYWDS 2 FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID, UNKNOWN KEYWDS 3 FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,G.CHHOR,M.ENDRES,G.BABNIGG,O.SCHNEEWIND,A.JOACHIMIAK,CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 3 15-NOV-23 7TWE 1 REMARK REVDAT 2 18-OCT-23 7TWE 1 REMARK REVDAT 1 16-FEB-22 7TWE 0 JRNL AUTH Y.KIM,G.CHHOR,M.ENDRES,G.BABNIGG,O.SCHNEEWIND,A.JOACHIMIAK, JRNL AUTH 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 3 (CSGID) JRNL TITL CRYSTAL STRUCTURE OF THE PUTATIVE OXIDOREDUCTASE OF JRNL TITL 2 DUF1479-CONTAINING PROTEIN FAMILY YPO2976 FROM YERSINIA JRNL TITL 3 PESTIS BOUND TO 2-OXO-GLUTARIC ACID JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4092 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 81.8 REMARK 3 NUMBER OF REFLECTIONS : 27676 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1409 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.3300 - 5.1800 0.99 3266 203 0.1871 0.1989 REMARK 3 2 5.1800 - 4.1100 1.00 3226 163 0.1614 0.2106 REMARK 3 3 4.1100 - 3.5900 1.00 3199 165 0.1715 0.2008 REMARK 3 4 3.5900 - 3.2700 1.00 3207 185 0.1945 0.2521 REMARK 3 5 3.2700 - 3.0300 0.98 3106 162 0.2280 0.2697 REMARK 3 6 3.0300 - 2.8500 0.89 2829 156 0.2424 0.2863 REMARK 3 7 2.8500 - 2.7100 0.77 2439 136 0.2474 0.3027 REMARK 3 8 2.7100 - 2.5900 0.65 2079 102 0.2594 0.3007 REMARK 3 9 2.5900 - 2.4900 0.55 1767 79 0.2525 0.2969 REMARK 3 10 2.4900 - 2.4100 0.36 1149 58 0.2716 0.3753 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.282 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.279 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 6623 REMARK 3 ANGLE : 0.409 8993 REMARK 3 CHIRALITY : 0.040 948 REMARK 3 PLANARITY : 0.004 1210 REMARK 3 DIHEDRAL : 13.546 2457 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.7826 -11.8749 48.7767 REMARK 3 T TENSOR REMARK 3 T11: 0.3749 T22: 0.2486 REMARK 3 T33: 0.1733 T12: -0.1191 REMARK 3 T13: -0.0097 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 1.3037 L22: 3.4113 REMARK 3 L33: 2.9045 L12: 0.4700 REMARK 3 L13: 0.3272 L23: 2.0287 REMARK 3 S TENSOR REMARK 3 S11: -0.1554 S12: 0.2439 S13: -0.2289 REMARK 3 S21: 0.2381 S22: -0.2983 S23: 0.3795 REMARK 3 S31: 0.7643 S32: -0.8019 S33: 0.4392 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 53 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8949 5.2623 65.3603 REMARK 3 T TENSOR REMARK 3 T11: 0.2439 T22: 0.3632 REMARK 3 T33: 0.2542 T12: 0.0892 REMARK 3 T13: -0.0556 T23: -0.1465 REMARK 3 L TENSOR REMARK 3 L11: 2.5775 L22: 1.6505 REMARK 3 L33: 3.4790 L12: -0.0376 REMARK 3 L13: -0.7029 L23: 0.3119 REMARK 3 S TENSOR REMARK 3 S11: 0.0009 S12: -0.5788 S13: 0.3716 REMARK 3 S21: 0.2295 S22: 0.1736 S23: -0.1256 REMARK 3 S31: -0.0403 S32: 0.3876 S33: -0.1403 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 186 THROUGH 342 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5954 -3.1206 53.4612 REMARK 3 T TENSOR REMARK 3 T11: 0.2272 T22: 0.2007 REMARK 3 T33: 0.1323 T12: -0.0296 REMARK 3 T13: 0.0073 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 2.4007 L22: 2.3628 REMARK 3 L33: 3.5513 L12: -0.4475 REMARK 3 L13: -0.1592 L23: 1.5913 REMARK 3 S TENSOR REMARK 3 S11: -0.0924 S12: -0.0227 S13: 0.0284 REMARK 3 S21: 0.0434 S22: 0.1001 S23: -0.0954 REMARK 3 S31: 0.3969 S32: -0.0997 S33: -0.0095 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 343 THROUGH 379 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.5347 5.0536 59.6907 REMARK 3 T TENSOR REMARK 3 T11: 0.1730 T22: 0.3872 REMARK 3 T33: 0.2784 T12: 0.0389 REMARK 3 T13: -0.0679 T23: -0.1736 REMARK 3 L TENSOR REMARK 3 L11: 3.2633 L22: 1.6097 REMARK 3 L33: 3.5541 L12: -0.0839 REMARK 3 L13: 0.2513 L23: -0.4978 REMARK 3 S TENSOR REMARK 3 S11: 0.0834 S12: -0.4017 S13: 0.2755 REMARK 3 S21: -0.3781 S22: 0.0871 S23: 0.0077 REMARK 3 S31: 0.1122 S32: 0.4336 S33: -0.1350 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 380 THROUGH 416 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.4875 6.9630 61.4367 REMARK 3 T TENSOR REMARK 3 T11: 0.1972 T22: 0.6500 REMARK 3 T33: 0.5201 T12: 0.0900 REMARK 3 T13: -0.0589 T23: -0.3010 REMARK 3 L TENSOR REMARK 3 L11: 2.5561 L22: 2.4654 REMARK 3 L33: 4.3914 L12: 1.8162 REMARK 3 L13: 1.4171 L23: 1.2180 REMARK 3 S TENSOR REMARK 3 S11: -0.3299 S12: -0.5294 S13: 0.3218 REMARK 3 S21: 0.0772 S22: 0.2348 S23: -0.7095 REMARK 3 S31: -0.2576 S32: 0.9045 S33: 0.0929 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1021 5.5999 24.5103 REMARK 3 T TENSOR REMARK 3 T11: 0.4075 T22: 0.1601 REMARK 3 T33: 0.3957 T12: 0.1233 REMARK 3 T13: 0.1488 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 1.8367 L22: 2.8065 REMARK 3 L33: 2.7047 L12: -0.0775 REMARK 3 L13: -0.0857 L23: 1.1966 REMARK 3 S TENSOR REMARK 3 S11: 0.0481 S12: -0.0158 S13: 0.6025 REMARK 3 S21: 0.2341 S22: 0.0025 S23: 0.5490 REMARK 3 S31: -0.5633 S32: -0.7617 S33: 0.2177 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 53 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.7716 -15.4557 7.5930 REMARK 3 T TENSOR REMARK 3 T11: 0.2029 T22: 0.4954 REMARK 3 T33: 0.3033 T12: -0.0590 REMARK 3 T13: 0.0343 T23: -0.1614 REMARK 3 L TENSOR REMARK 3 L11: 3.2806 L22: 0.7276 REMARK 3 L33: 2.1697 L12: 0.6716 REMARK 3 L13: -0.7700 L23: 0.4024 REMARK 3 S TENSOR REMARK 3 S11: -0.1069 S12: 0.9505 S13: -0.5294 REMARK 3 S21: -0.1079 S22: -0.0106 S23: -0.0721 REMARK 3 S31: 0.1417 S32: -0.0680 S33: -0.0076 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 163 THROUGH 259 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.6407 0.7081 17.8714 REMARK 3 T TENSOR REMARK 3 T11: 0.2616 T22: 0.2225 REMARK 3 T33: 0.2732 T12: -0.0247 REMARK 3 T13: 0.0618 T23: 0.0392 REMARK 3 L TENSOR REMARK 3 L11: 3.3673 L22: 0.9991 REMARK 3 L33: 2.6937 L12: -0.5159 REMARK 3 L13: -0.1505 L23: 0.2741 REMARK 3 S TENSOR REMARK 3 S11: 0.0496 S12: 0.4031 S13: 0.4225 REMARK 3 S21: 0.0590 S22: -0.0123 S23: -0.2101 REMARK 3 S31: -0.4886 S32: 0.0665 S33: -0.0702 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 260 THROUGH 415 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.5946 -9.7482 18.4567 REMARK 3 T TENSOR REMARK 3 T11: 0.1808 T22: 0.2042 REMARK 3 T33: 0.1637 T12: -0.0692 REMARK 3 T13: 0.0285 T23: -0.0352 REMARK 3 L TENSOR REMARK 3 L11: 3.5699 L22: 1.6098 REMARK 3 L33: 2.2404 L12: -0.8327 REMARK 3 L13: -0.6537 L23: 0.2242 REMARK 3 S TENSOR REMARK 3 S11: -0.0455 S12: 0.2851 S13: -0.1369 REMARK 3 S21: 0.1528 S22: 0.0095 S23: -0.0190 REMARK 3 S31: -0.0263 S32: 0.0071 S33: 0.0209 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7TWE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1000262718. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32217 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.6 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.42000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.360 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000, MOLREP REMARK 200 STARTING MODEL: PDB ID 4RGK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM CHLORIDE, 0.1 M TRISHCL REMARK 280 PH 8.5, 25 % (W/V) PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 27.02700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -1 REMARK 465 ASN A 0 REMARK 465 ALA A 1 REMARK 465 MSE A 2 REMARK 465 ALA A 119 REMARK 465 GLU A 120 REMARK 465 ASP A 121 REMARK 465 ALA A 129 REMARK 465 SER A 130 REMARK 465 SER B -1 REMARK 465 ASN B 0 REMARK 465 ALA B 1 REMARK 465 MSE B 2 REMARK 465 ALA B 3 REMARK 465 SER B 4 REMARK 465 ASN B 117 REMARK 465 ALA B 118 REMARK 465 ALA B 119 REMARK 465 GLU B 120 REMARK 465 ASP B 121 REMARK 465 ASN B 122 REMARK 465 TYR B 123 REMARK 465 PHE B 124 REMARK 465 GLY B 125 REMARK 465 THR B 126 REMARK 465 LEU B 127 REMARK 465 ALA B 128 REMARK 465 ALA B 129 REMARK 465 SER B 130 REMARK 465 LYS B 131 REMARK 465 PRO B 132 REMARK 465 ASP B 416 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 27 40.21 -98.07 REMARK 500 SER A 205 -95.20 -125.42 REMARK 500 THR A 270 -166.56 -118.02 REMARK 500 ALA A 388 72.50 -69.30 REMARK 500 GLU A 392 20.72 -78.25 REMARK 500 ASP A 394 52.49 -118.27 REMARK 500 THR A 400 -166.26 -117.56 REMARK 500 ASP B 27 47.72 -99.76 REMARK 500 TYR B 138 -34.42 -131.00 REMARK 500 SER B 205 -92.27 -125.29 REMARK 500 GLN B 225 58.62 -95.77 REMARK 500 THR B 270 -167.54 -122.29 REMARK 500 LEU B 297 51.28 -107.99 REMARK 500 ASN B 347 48.97 -102.97 REMARK 500 THR B 400 -169.66 -121.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 200 NE2 REMARK 620 2 ASP A 202 OD2 113.7 REMARK 620 3 HIS A 340 NE2 93.7 87.3 REMARK 620 4 AKG A 502 O1 161.3 83.9 93.4 REMARK 620 5 AKG A 502 O5 90.0 155.8 96.2 72.0 REMARK 620 6 HOH A 626 O 81.8 91.8 174.7 91.7 86.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 200 NE2 REMARK 620 2 ASP B 202 OD2 110.1 REMARK 620 3 HIS B 340 NE2 87.2 92.7 REMARK 620 4 AKG B 502 O5 84.4 165.0 92.1 REMARK 620 5 AKG B 502 O2 157.3 84.8 109.8 80.2 REMARK 620 6 HOH B 634 O 77.6 103.0 161.1 75.4 82.5 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4RGK RELATED DB: PDB REMARK 900 THE SAME PROTEIN, APO-FORM REMARK 900 RELATED ID: CSGID-IDP96007 RELATED DB: TARGETTRACK DBREF1 7TWE A 2 416 UNP A0A3G5LE49_YERPE DBREF2 7TWE A A0A3G5LE49 1 415 DBREF1 7TWE B 2 416 UNP A0A3G5LE49_YERPE DBREF2 7TWE B A0A3G5LE49 1 415 SEQADV 7TWE SER A -1 UNP A0A3G5LE4 EXPRESSION TAG SEQADV 7TWE ASN A 0 UNP A0A3G5LE4 EXPRESSION TAG SEQADV 7TWE ALA A 1 UNP A0A3G5LE4 EXPRESSION TAG SEQADV 7TWE SER B -1 UNP A0A3G5LE4 EXPRESSION TAG SEQADV 7TWE ASN B 0 UNP A0A3G5LE4 EXPRESSION TAG SEQADV 7TWE ALA B 1 UNP A0A3G5LE4 EXPRESSION TAG SEQRES 1 A 418 SER ASN ALA MSE ALA SER LEU HIS ILE ASP ASP ILE PRO SEQRES 2 A 418 ALA ALA ILE LYS ALA VAL LYS GLN GLN LEU ARG GLN ALA SEQRES 3 A 418 LEU PRO ASP TYR GLN GLN VAL PHE GLN ALA VAL GLU GLU SEQRES 4 A 418 ASN ILE ARG GLN GLN VAL MSE GLU ILE ARG ARG ASN LEU SEQRES 5 A 418 ALA GLU GLY LYS ASN PRO VAL PRO GLN LEU HIS ALA ASP SEQRES 6 A 418 ASP ILE ILE ASN GLY LYS VAL THR GLU GLU GLN LYS ALA SEQRES 7 A 418 GLN ILE LYS GLN ARG GLY CYS CYS ALA ILE LEU GLY VAL SEQRES 8 A 418 PHE PRO GLN GLU LYS ALA THR ALA TRP ASN ARG GLU ILE SEQRES 9 A 418 GLY ASP TYR LEU ASP ARG ASN ASN PHE VAL GLU ARG LEU SEQRES 10 A 418 LYS ASN ALA ALA GLU ASP ASN TYR PHE GLY THR LEU ALA SEQRES 11 A 418 ALA SER LYS PRO GLN ILE TYR GLY ILE TYR TRP SER THR SEQRES 12 A 418 PRO GLN VAL GLU ALA ARG GLN ASP LYS ARG MSE GLN ALA SEQRES 13 A 418 VAL GLN ILE PHE LEU ASN ASN LEU TRP GLN THR GLU SER SEQRES 14 A 418 ASN GLY LYS GLN HIS PHE ASP ALA ASN ARG VAL VAL THR SEQRES 15 A 418 TYR ALA ASP ARG THR ARG ARG ARG PRO PRO LYS SER SER SEQRES 16 A 418 SER LEU GLY LEU SER PRO HIS VAL ASP GLY GLY SER ILE SEQRES 17 A 418 GLU ARG TRP LEU ASP GLU ASN PHE ARG HIS VAL TYR ARG SEQRES 18 A 418 HIS VAL PHE SER GLY GLN TRP GLN LYS TYR ASP PRO PHE SEQRES 19 A 418 ALA ALA GLU GLY ARG PRO GLU VAL ARG GLU PHE PRO SER SEQRES 20 A 418 PRO ALA VAL CYS SER MSE PHE ARG THR PHE GLN GLY TRP SEQRES 21 A 418 THR ALA LEU THR PRO GLN ARG THR HIS ALA GLY THR LEU SEQRES 22 A 418 ASN VAL ILE PRO ILE ALA ASN ALA MSE ALA TYR ILE LEU SEQRES 23 A 418 LEU ARG ALA LEU GLN ASP ASP VAL ALA ASP ASP ASP LEU SEQRES 24 A 418 CYS GLY ALA ALA PRO GLY ARG ALA LEU SER ALA SER GLU SEQRES 25 A 418 GLN TRP HIS PRO LEU LEU MSE GLU ALA ILE SER PRO ILE SEQRES 26 A 418 PRO ASP LEU GLU ALA GLY ASP THR VAL PHE TRP HIS CYS SEQRES 27 A 418 ASP VAL ILE HIS SER VAL GLU ASN GLU HIS ASN GLY GLU SEQRES 28 A 418 PHE ASP SER ASN VAL MSE TYR ILE ALA ALA ALA PRO TRP SEQRES 29 A 418 CYS GLU LYS ASN ALA ALA TYR LEU PRO ARG GLN LEU ALA SEQRES 30 A 418 SER PHE ILE ASP GLY ARG SER PRO PRO ASP PHE ALA ALA SEQRES 31 A 418 ASP ASP PHE GLU VAL ASP PHE ILE GLY ARG ALA THR ILE SEQRES 32 A 418 LYS ASN LEU THR GLU ILE GLY LYS GLN GLN LEU GLY ILE SEQRES 33 A 418 THR ASP SEQRES 1 B 418 SER ASN ALA MSE ALA SER LEU HIS ILE ASP ASP ILE PRO SEQRES 2 B 418 ALA ALA ILE LYS ALA VAL LYS GLN GLN LEU ARG GLN ALA SEQRES 3 B 418 LEU PRO ASP TYR GLN GLN VAL PHE GLN ALA VAL GLU GLU SEQRES 4 B 418 ASN ILE ARG GLN GLN VAL MSE GLU ILE ARG ARG ASN LEU SEQRES 5 B 418 ALA GLU GLY LYS ASN PRO VAL PRO GLN LEU HIS ALA ASP SEQRES 6 B 418 ASP ILE ILE ASN GLY LYS VAL THR GLU GLU GLN LYS ALA SEQRES 7 B 418 GLN ILE LYS GLN ARG GLY CYS CYS ALA ILE LEU GLY VAL SEQRES 8 B 418 PHE PRO GLN GLU LYS ALA THR ALA TRP ASN ARG GLU ILE SEQRES 9 B 418 GLY ASP TYR LEU ASP ARG ASN ASN PHE VAL GLU ARG LEU SEQRES 10 B 418 LYS ASN ALA ALA GLU ASP ASN TYR PHE GLY THR LEU ALA SEQRES 11 B 418 ALA SER LYS PRO GLN ILE TYR GLY ILE TYR TRP SER THR SEQRES 12 B 418 PRO GLN VAL GLU ALA ARG GLN ASP LYS ARG MSE GLN ALA SEQRES 13 B 418 VAL GLN ILE PHE LEU ASN ASN LEU TRP GLN THR GLU SER SEQRES 14 B 418 ASN GLY LYS GLN HIS PHE ASP ALA ASN ARG VAL VAL THR SEQRES 15 B 418 TYR ALA ASP ARG THR ARG ARG ARG PRO PRO LYS SER SER SEQRES 16 B 418 SER LEU GLY LEU SER PRO HIS VAL ASP GLY GLY SER ILE SEQRES 17 B 418 GLU ARG TRP LEU ASP GLU ASN PHE ARG HIS VAL TYR ARG SEQRES 18 B 418 HIS VAL PHE SER GLY GLN TRP GLN LYS TYR ASP PRO PHE SEQRES 19 B 418 ALA ALA GLU GLY ARG PRO GLU VAL ARG GLU PHE PRO SER SEQRES 20 B 418 PRO ALA VAL CYS SER MSE PHE ARG THR PHE GLN GLY TRP SEQRES 21 B 418 THR ALA LEU THR PRO GLN ARG THR HIS ALA GLY THR LEU SEQRES 22 B 418 ASN VAL ILE PRO ILE ALA ASN ALA MSE ALA TYR ILE LEU SEQRES 23 B 418 LEU ARG ALA LEU GLN ASP ASP VAL ALA ASP ASP ASP LEU SEQRES 24 B 418 CYS GLY ALA ALA PRO GLY ARG ALA LEU SER ALA SER GLU SEQRES 25 B 418 GLN TRP HIS PRO LEU LEU MSE GLU ALA ILE SER PRO ILE SEQRES 26 B 418 PRO ASP LEU GLU ALA GLY ASP THR VAL PHE TRP HIS CYS SEQRES 27 B 418 ASP VAL ILE HIS SER VAL GLU ASN GLU HIS ASN GLY GLU SEQRES 28 B 418 PHE ASP SER ASN VAL MSE TYR ILE ALA ALA ALA PRO TRP SEQRES 29 B 418 CYS GLU LYS ASN ALA ALA TYR LEU PRO ARG GLN LEU ALA SEQRES 30 B 418 SER PHE ILE ASP GLY ARG SER PRO PRO ASP PHE ALA ALA SEQRES 31 B 418 ASP ASP PHE GLU VAL ASP PHE ILE GLY ARG ALA THR ILE SEQRES 32 B 418 LYS ASN LEU THR GLU ILE GLY LYS GLN GLN LEU GLY ILE SEQRES 33 B 418 THR ASP MODRES 7TWE MSE A 44 MET MODIFIED RESIDUE MODRES 7TWE MSE A 152 MET MODIFIED RESIDUE MODRES 7TWE MSE A 251 MET MODIFIED RESIDUE MODRES 7TWE MSE A 280 MET MODIFIED RESIDUE MODRES 7TWE MSE A 317 MET MODIFIED RESIDUE MODRES 7TWE MSE A 355 MET MODIFIED RESIDUE MODRES 7TWE MSE B 44 MET MODIFIED RESIDUE MODRES 7TWE MSE B 152 MET MODIFIED RESIDUE MODRES 7TWE MSE B 251 MET MODIFIED RESIDUE MODRES 7TWE MSE B 280 MET MODIFIED RESIDUE MODRES 7TWE MSE B 317 MET MODIFIED RESIDUE MODRES 7TWE MSE B 355 MET MODIFIED RESIDUE HET MSE A 44 8 HET MSE A 152 8 HET MSE A 251 8 HET MSE A 280 8 HET MSE A 317 8 HET MSE A 355 8 HET MSE B 44 8 HET MSE B 152 8 HET MSE B 251 8 HET MSE B 280 8 HET MSE B 317 8 HET MSE B 355 8 HET MN A 501 1 HET AKG A 502 10 HET MN B 501 1 HET AKG B 502 10 HET EDO B 503 4 HETNAM MSE SELENOMETHIONINE HETNAM MN MANGANESE (II) ION HETNAM AKG 2-OXOGLUTARIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 MN 2(MN 2+) FORMUL 4 AKG 2(C5 H6 O5) FORMUL 7 EDO C2 H6 O2 FORMUL 8 HOH *87(H2 O) HELIX 1 AA1 ASP A 9 LEU A 25 1 17 HELIX 2 AA2 ASP A 27 GLY A 53 1 27 HELIX 3 AA3 ALA A 62 ASN A 67 1 6 HELIX 4 AA4 THR A 71 GLY A 82 1 12 HELIX 5 AA5 PRO A 91 ASN A 109 1 19 HELIX 6 AA6 ASN A 110 ALA A 118 1 9 HELIX 7 AA7 TYR A 123 ALA A 128 1 6 HELIX 8 AA8 SER A 140 GLN A 148 1 9 HELIX 9 AA9 ASP A 149 ASN A 161 1 13 HELIX 10 AB1 ILE A 206 ASP A 211 1 6 HELIX 11 AB2 ASP A 211 TYR A 218 1 8 HELIX 12 AB3 TYR A 218 SER A 223 1 6 HELIX 13 AB4 GLN A 225 TYR A 229 5 5 HELIX 14 AB5 GLY A 236 VAL A 240 5 5 HELIX 15 AB6 ASN A 278 ALA A 287 1 10 HELIX 16 AB7 HIS A 313 GLU A 318 1 6 HELIX 17 AB8 CYS A 363 GLY A 380 1 18 HELIX 18 AB9 ASP A 390 PHE A 395 5 6 HELIX 19 AC1 THR A 400 LEU A 404 5 5 HELIX 20 AC2 THR A 405 GLN A 411 1 7 HELIX 21 AC3 ASP B 9 LEU B 25 1 17 HELIX 22 AC4 ASP B 27 GLY B 53 1 27 HELIX 23 AC5 ALA B 62 ASN B 67 1 6 HELIX 24 AC6 THR B 71 GLY B 82 1 12 HELIX 25 AC7 PRO B 91 ARG B 108 1 18 HELIX 26 AC8 ASN B 110 LYS B 116 1 7 HELIX 27 AC9 SER B 140 GLN B 148 1 9 HELIX 28 AD1 ASP B 149 ASN B 161 1 13 HELIX 29 AD2 ILE B 206 ASP B 211 1 6 HELIX 30 AD3 ASP B 211 TYR B 218 1 8 HELIX 31 AD4 GLN B 225 TYR B 229 5 5 HELIX 32 AD5 ASN B 278 ALA B 287 1 10 HELIX 33 AD6 HIS B 313 GLU B 318 1 6 HELIX 34 AD7 CYS B 363 GLY B 380 1 18 HELIX 35 AD8 ASP B 390 ASP B 394 5 5 HELIX 36 AD9 THR B 400 LEU B 404 5 5 HELIX 37 AE1 THR B 405 GLN B 411 1 7 SHEET 1 AA1 7 GLN A 59 HIS A 61 0 SHEET 2 AA1 7 CYS A 83 LEU A 87 1 O LEU A 87 N LEU A 60 SHEET 3 AA1 7 THR A 331 HIS A 335 -1 O PHE A 333 N CYS A 84 SHEET 4 AA1 7 PHE A 255 ALA A 260 -1 N GLN A 256 O TRP A 334 SHEET 5 AA1 7 SER A 352 TYR A 356 -1 O MSE A 355 N THR A 259 SHEET 6 AA1 7 THR A 185 ARG A 188 -1 N ARG A 186 O VAL A 354 SHEET 7 AA1 7 ILE A 134 TYR A 135 -1 N TYR A 135 O THR A 185 SHEET 1 AA2 2 ASP A 174 VAL A 179 0 SHEET 2 AA2 2 ALA A 360 TRP A 362 -1 O TRP A 362 N ASP A 174 SHEET 1 AA3 2 HIS A 200 VAL A 201 0 SHEET 2 AA3 2 LEU A 306 SER A 307 -1 O LEU A 306 N VAL A 201 SHEET 1 AA4 3 SER A 321 PRO A 322 0 SHEET 2 AA4 3 LEU A 271 VAL A 273 -1 N VAL A 273 O SER A 321 SHEET 3 AA4 3 HIS A 340 VAL A 342 -1 O SER A 341 N ASN A 272 SHEET 1 AA5 7 GLN B 59 HIS B 61 0 SHEET 2 AA5 7 CYS B 83 LEU B 87 1 O LEU B 87 N LEU B 60 SHEET 3 AA5 7 THR B 331 HIS B 335 -1 O PHE B 333 N CYS B 84 SHEET 4 AA5 7 PHE B 255 ALA B 260 -1 N GLN B 256 O TRP B 334 SHEET 5 AA5 7 SER B 352 TYR B 356 -1 O MSE B 355 N THR B 259 SHEET 6 AA5 7 THR B 185 ARG B 188 -1 N ARG B 186 O VAL B 354 SHEET 7 AA5 7 ILE B 134 TYR B 135 -1 N TYR B 135 O THR B 185 SHEET 1 AA6 2 GLU B 166 SER B 167 0 SHEET 2 AA6 2 LYS B 170 GLN B 171 -1 O LYS B 170 N SER B 167 SHEET 1 AA7 2 ASP B 174 VAL B 179 0 SHEET 2 AA7 2 ALA B 360 TRP B 362 -1 O ALA B 360 N VAL B 179 SHEET 1 AA8 5 LEU B 306 SER B 307 0 SHEET 2 AA8 5 LEU B 197 VAL B 201 -1 N VAL B 201 O LEU B 306 SHEET 3 AA8 5 HIS B 340 VAL B 342 -1 O HIS B 340 N HIS B 200 SHEET 4 AA8 5 LEU B 271 VAL B 273 -1 N ASN B 272 O SER B 341 SHEET 5 AA8 5 SER B 321 PRO B 322 -1 O SER B 321 N VAL B 273 LINK C VAL A 43 N MSE A 44 1555 1555 1.33 LINK C MSE A 44 N GLU A 45 1555 1555 1.34 LINK C ARG A 151 N MSE A 152 1555 1555 1.33 LINK C MSE A 152 N GLN A 153 1555 1555 1.34 LINK C SER A 250 N MSE A 251 1555 1555 1.33 LINK C MSE A 251 N PHE A 252 1555 1555 1.33 LINK C ALA A 279 N MSE A 280 1555 1555 1.33 LINK C MSE A 280 N ALA A 281 1555 1555 1.34 LINK C LEU A 316 N MSE A 317 1555 1555 1.33 LINK C MSE A 317 N GLU A 318 1555 1555 1.34 LINK C VAL A 354 N MSE A 355 1555 1555 1.33 LINK C MSE A 355 N TYR A 356 1555 1555 1.33 LINK C VAL B 43 N MSE B 44 1555 1555 1.33 LINK C MSE B 44 N GLU B 45 1555 1555 1.34 LINK C ARG B 151 N MSE B 152 1555 1555 1.33 LINK C MSE B 152 N GLN B 153 1555 1555 1.34 LINK C SER B 250 N MSE B 251 1555 1555 1.33 LINK C MSE B 251 N PHE B 252 1555 1555 1.33 LINK C ALA B 279 N MSE B 280 1555 1555 1.33 LINK C MSE B 280 N ALA B 281 1555 1555 1.34 LINK C LEU B 316 N MSE B 317 1555 1555 1.33 LINK C MSE B 317 N GLU B 318 1555 1555 1.34 LINK C VAL B 354 N MSE B 355 1555 1555 1.33 LINK C MSE B 355 N TYR B 356 1555 1555 1.33 LINK NE2 HIS A 200 MN MN A 501 1555 1555 2.13 LINK OD2 ASP A 202 MN MN A 501 1555 1555 2.23 LINK NE2 HIS A 340 MN MN A 501 1555 1555 2.12 LINK MN MN A 501 O1 AKG A 502 1555 1555 1.99 LINK MN MN A 501 O5 AKG A 502 1555 1555 2.60 LINK MN MN A 501 O HOH A 626 1555 1555 2.29 LINK NE2 HIS B 200 MN MN B 501 1555 1555 2.29 LINK OD2 ASP B 202 MN MN B 501 1555 1555 2.14 LINK NE2 HIS B 340 MN MN B 501 1555 1555 2.15 LINK MN MN B 501 O5 AKG B 502 1555 1555 2.16 LINK MN MN B 501 O2 AKG B 502 1555 1555 2.03 LINK MN MN B 501 O HOH B 634 1555 1555 2.75 CRYST1 54.426 54.054 148.290 90.00 92.97 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018374 0.000000 0.000954 0.00000 SCALE2 0.000000 0.018500 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006753 0.00000