data_7TXJ # _entry.id 7TXJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7TXJ pdb_00007txj 10.2210/pdb7txj/pdb WWPDB D_1000263088 ? ? EMDB EMD-26159 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-06-01 2 'Structure model' 1 1 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7TXJ _pdbx_database_status.recvd_initial_deposition_date 2022-02-09 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM of AFV6' _pdbx_database_related.db_id EMD-26159 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email egelman@virginia.edu _pdbx_contact_author.name_first Edward _pdbx_contact_author.name_last Egelman _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4844-5212 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wang, F.' 1 0000-0003-1008-663X 'Cvirkaite-Krupovic, V.' 2 ? 'Krupovic, M.' 3 ? 'Egelman, E.H.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Cryo-EM of AFV6' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wang, F.' 1 0000-0003-1008-663X primary 'Cvirkaite-Krupovic, V.' 2 ? primary 'Krupovic, M.' 3 ? primary 'Egelman, E.H.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat ;DNA (5'-D(*TP*AP*TP*AP*TP*AP*TP*AP*TP*AP*TP*A)-3') ; 3659.440 2 ? ? ? ? 2 polymer nat MCP1 18593.428 1 ? ? ? ? 3 polymer nat MCP2 22751.678 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DT)(DA)(DT)(DA)(DT)(DA)(DT)(DA)(DT)(DA)(DT)(DA)' TATATATATATA 1,2 ? 2 'polypeptide(L)' no no ;MAGKKRRLSQASVLRYYAKRFTMNVGTTAHVLGKEVAGNPWVAKAIDKLSYQETYNWISDYQASHLAKQVAKQVAEKYGI PPTFQGLLMAYAEKVVANYILDYKGESLTQMHDNYLYELMQKMPIAPTGTSSGYIYVFIGKDGKTHTVDMSKVLTDIEDA LLKRA ; ;MAGKKRRLSQASVLRYYAKRFTMNVGTTAHVLGKEVAGNPWVAKAIDKLSYQETYNWISDYQASHLAKQVAKQVAEKYGI PPTFQGLLMAYAEKVVANYILDYKGESLTQMHDNYLYELMQKMPIAPTGTSSGYIYVFIGKDGKTHTVDMSKVLTDIEDA LLKRA ; A ? 3 'polypeptide(L)' no no ;MAGRQAHRKFDVRNDTSTRWKGKLYGIFVNYMGEDYAKEFVEQAYSNYEKVFVNIYTKIHNQLRTTLTSSAGAGATFPLW QIINEAIYAVYLTHKETASFLYAKYVARGIQPNVVKKILAETGNALKGIVPAVAQELGETVLDESNVISVVDDIVRKNPA LPNSYAGIILQEARISTTPHYEGTEGFSSMESAYSALEEIEKGL ; ;MAGRQAHRKFDVRNDTSTRWKGKLYGIFVNYMGEDYAKEFVEQAYSNYEKVFVNIYTKIHNQLRTTLTSSAGAGATFPLW QIINEAIYAVYLTHKETASFLYAKYVARGIQPNVVKKILAETGNALKGIVPAVAQELGETVLDESNVISVVDDIVRKNPA LPNSYAGIILQEARISTTPHYEGTEGFSSMESAYSALEEIEKGL ; a ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DA n 1 3 DT n 1 4 DA n 1 5 DT n 1 6 DA n 1 7 DT n 1 8 DA n 1 9 DT n 1 10 DA n 1 11 DT n 1 12 DA n 2 1 MET n 2 2 ALA n 2 3 GLY n 2 4 LYS n 2 5 LYS n 2 6 ARG n 2 7 ARG n 2 8 LEU n 2 9 SER n 2 10 GLN n 2 11 ALA n 2 12 SER n 2 13 VAL n 2 14 LEU n 2 15 ARG n 2 16 TYR n 2 17 TYR n 2 18 ALA n 2 19 LYS n 2 20 ARG n 2 21 PHE n 2 22 THR n 2 23 MET n 2 24 ASN n 2 25 VAL n 2 26 GLY n 2 27 THR n 2 28 THR n 2 29 ALA n 2 30 HIS n 2 31 VAL n 2 32 LEU n 2 33 GLY n 2 34 LYS n 2 35 GLU n 2 36 VAL n 2 37 ALA n 2 38 GLY n 2 39 ASN n 2 40 PRO n 2 41 TRP n 2 42 VAL n 2 43 ALA n 2 44 LYS n 2 45 ALA n 2 46 ILE n 2 47 ASP n 2 48 LYS n 2 49 LEU n 2 50 SER n 2 51 TYR n 2 52 GLN n 2 53 GLU n 2 54 THR n 2 55 TYR n 2 56 ASN n 2 57 TRP n 2 58 ILE n 2 59 SER n 2 60 ASP n 2 61 TYR n 2 62 GLN n 2 63 ALA n 2 64 SER n 2 65 HIS n 2 66 LEU n 2 67 ALA n 2 68 LYS n 2 69 GLN n 2 70 VAL n 2 71 ALA n 2 72 LYS n 2 73 GLN n 2 74 VAL n 2 75 ALA n 2 76 GLU n 2 77 LYS n 2 78 TYR n 2 79 GLY n 2 80 ILE n 2 81 PRO n 2 82 PRO n 2 83 THR n 2 84 PHE n 2 85 GLN n 2 86 GLY n 2 87 LEU n 2 88 LEU n 2 89 MET n 2 90 ALA n 2 91 TYR n 2 92 ALA n 2 93 GLU n 2 94 LYS n 2 95 VAL n 2 96 VAL n 2 97 ALA n 2 98 ASN n 2 99 TYR n 2 100 ILE n 2 101 LEU n 2 102 ASP n 2 103 TYR n 2 104 LYS n 2 105 GLY n 2 106 GLU n 2 107 SER n 2 108 LEU n 2 109 THR n 2 110 GLN n 2 111 MET n 2 112 HIS n 2 113 ASP n 2 114 ASN n 2 115 TYR n 2 116 LEU n 2 117 TYR n 2 118 GLU n 2 119 LEU n 2 120 MET n 2 121 GLN n 2 122 LYS n 2 123 MET n 2 124 PRO n 2 125 ILE n 2 126 ALA n 2 127 PRO n 2 128 THR n 2 129 GLY n 2 130 THR n 2 131 SER n 2 132 SER n 2 133 GLY n 2 134 TYR n 2 135 ILE n 2 136 TYR n 2 137 VAL n 2 138 PHE n 2 139 ILE n 2 140 GLY n 2 141 LYS n 2 142 ASP n 2 143 GLY n 2 144 LYS n 2 145 THR n 2 146 HIS n 2 147 THR n 2 148 VAL n 2 149 ASP n 2 150 MET n 2 151 SER n 2 152 LYS n 2 153 VAL n 2 154 LEU n 2 155 THR n 2 156 ASP n 2 157 ILE n 2 158 GLU n 2 159 ASP n 2 160 ALA n 2 161 LEU n 2 162 LEU n 2 163 LYS n 2 164 ARG n 2 165 ALA n 3 1 MET n 3 2 ALA n 3 3 GLY n 3 4 ARG n 3 5 GLN n 3 6 ALA n 3 7 HIS n 3 8 ARG n 3 9 LYS n 3 10 PHE n 3 11 ASP n 3 12 VAL n 3 13 ARG n 3 14 ASN n 3 15 ASP n 3 16 THR n 3 17 SER n 3 18 THR n 3 19 ARG n 3 20 TRP n 3 21 LYS n 3 22 GLY n 3 23 LYS n 3 24 LEU n 3 25 TYR n 3 26 GLY n 3 27 ILE n 3 28 PHE n 3 29 VAL n 3 30 ASN n 3 31 TYR n 3 32 MET n 3 33 GLY n 3 34 GLU n 3 35 ASP n 3 36 TYR n 3 37 ALA n 3 38 LYS n 3 39 GLU n 3 40 PHE n 3 41 VAL n 3 42 GLU n 3 43 GLN n 3 44 ALA n 3 45 TYR n 3 46 SER n 3 47 ASN n 3 48 TYR n 3 49 GLU n 3 50 LYS n 3 51 VAL n 3 52 PHE n 3 53 VAL n 3 54 ASN n 3 55 ILE n 3 56 TYR n 3 57 THR n 3 58 LYS n 3 59 ILE n 3 60 HIS n 3 61 ASN n 3 62 GLN n 3 63 LEU n 3 64 ARG n 3 65 THR n 3 66 THR n 3 67 LEU n 3 68 THR n 3 69 SER n 3 70 SER n 3 71 ALA n 3 72 GLY n 3 73 ALA n 3 74 GLY n 3 75 ALA n 3 76 THR n 3 77 PHE n 3 78 PRO n 3 79 LEU n 3 80 TRP n 3 81 GLN n 3 82 ILE n 3 83 ILE n 3 84 ASN n 3 85 GLU n 3 86 ALA n 3 87 ILE n 3 88 TYR n 3 89 ALA n 3 90 VAL n 3 91 TYR n 3 92 LEU n 3 93 THR n 3 94 HIS n 3 95 LYS n 3 96 GLU n 3 97 THR n 3 98 ALA n 3 99 SER n 3 100 PHE n 3 101 LEU n 3 102 TYR n 3 103 ALA n 3 104 LYS n 3 105 TYR n 3 106 VAL n 3 107 ALA n 3 108 ARG n 3 109 GLY n 3 110 ILE n 3 111 GLN n 3 112 PRO n 3 113 ASN n 3 114 VAL n 3 115 VAL n 3 116 LYS n 3 117 LYS n 3 118 ILE n 3 119 LEU n 3 120 ALA n 3 121 GLU n 3 122 THR n 3 123 GLY n 3 124 ASN n 3 125 ALA n 3 126 LEU n 3 127 LYS n 3 128 GLY n 3 129 ILE n 3 130 VAL n 3 131 PRO n 3 132 ALA n 3 133 VAL n 3 134 ALA n 3 135 GLN n 3 136 GLU n 3 137 LEU n 3 138 GLY n 3 139 GLU n 3 140 THR n 3 141 VAL n 3 142 LEU n 3 143 ASP n 3 144 GLU n 3 145 SER n 3 146 ASN n 3 147 VAL n 3 148 ILE n 3 149 SER n 3 150 VAL n 3 151 VAL n 3 152 ASP n 3 153 ASP n 3 154 ILE n 3 155 VAL n 3 156 ARG n 3 157 LYS n 3 158 ASN n 3 159 PRO n 3 160 ALA n 3 161 LEU n 3 162 PRO n 3 163 ASN n 3 164 SER n 3 165 TYR n 3 166 ALA n 3 167 GLY n 3 168 ILE n 3 169 ILE n 3 170 LEU n 3 171 GLN n 3 172 GLU n 3 173 ALA n 3 174 ARG n 3 175 ILE n 3 176 SER n 3 177 THR n 3 178 THR n 3 179 PRO n 3 180 HIS n 3 181 TYR n 3 182 GLU n 3 183 GLY n 3 184 THR n 3 185 GLU n 3 186 GLY n 3 187 PHE n 3 188 SER n 3 189 SER n 3 190 MET n 3 191 GLU n 3 192 SER n 3 193 ALA n 3 194 TYR n 3 195 SER n 3 196 ALA n 3 197 LEU n 3 198 GLU n 3 199 GLU n 3 200 ILE n 3 201 GLU n 3 202 LYS n 3 203 GLY n 3 204 LEU n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample 1 12 ? 'Acidianus filamentous virus 6' 346882 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 1 165 ? 'Acidianus filamentous virus 6' 346882 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample 1 204 ? 'Acidianus filamentous virus 6' 346882 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT DT 1 . n A 1 2 DA 2 2 2 DA DA 1 . n A 1 3 DT 3 3 3 DT DT 1 . n A 1 4 DA 4 4 4 DA DA 1 . n A 1 5 DT 5 5 5 DT DT 1 . n A 1 6 DA 6 6 6 DA DA 1 . n A 1 7 DT 7 7 7 DT DT 1 . n A 1 8 DA 8 8 8 DA DA 1 . n A 1 9 DT 9 9 9 DT DT 1 . n A 1 10 DA 10 10 10 DA DA 1 . n A 1 11 DT 11 11 11 DT DT 1 . n A 1 12 DA 12 12 12 DA DA 1 . n B 1 1 DT 1 1 1 DT DT 2 . n B 1 2 DA 2 2 2 DA DA 2 . n B 1 3 DT 3 3 3 DT DT 2 . n B 1 4 DA 4 4 4 DA DA 2 . n B 1 5 DT 5 5 5 DT DT 2 . n B 1 6 DA 6 6 6 DA DA 2 . n B 1 7 DT 7 7 7 DT DT 2 . n B 1 8 DA 8 8 8 DA DA 2 . n B 1 9 DT 9 9 9 DT DT 2 . n B 1 10 DA 10 10 10 DA DA 2 . n B 1 11 DT 11 11 11 DT DT 2 . n B 1 12 DA 12 12 12 DA DA 2 . n C 2 1 MET 1 1 ? ? ? A . n C 2 2 ALA 2 2 ? ? ? A . n C 2 3 GLY 3 3 ? ? ? A . n C 2 4 LYS 4 4 ? ? ? A . n C 2 5 LYS 5 5 ? ? ? A . n C 2 6 ARG 6 6 ? ? ? A . n C 2 7 ARG 7 7 7 ARG ARG A . n C 2 8 LEU 8 8 8 LEU LEU A . n C 2 9 SER 9 9 9 SER SER A . n C 2 10 GLN 10 10 10 GLN GLN A . n C 2 11 ALA 11 11 11 ALA ALA A . n C 2 12 SER 12 12 12 SER SER A . n C 2 13 VAL 13 13 13 VAL VAL A . n C 2 14 LEU 14 14 14 LEU LEU A . n C 2 15 ARG 15 15 15 ARG ARG A . n C 2 16 TYR 16 16 16 TYR TYR A . n C 2 17 TYR 17 17 17 TYR TYR A . n C 2 18 ALA 18 18 18 ALA ALA A . n C 2 19 LYS 19 19 19 LYS LYS A . n C 2 20 ARG 20 20 20 ARG ARG A . n C 2 21 PHE 21 21 21 PHE PHE A . n C 2 22 THR 22 22 22 THR THR A . n C 2 23 MET 23 23 23 MET MET A . n C 2 24 ASN 24 24 24 ASN ASN A . n C 2 25 VAL 25 25 25 VAL VAL A . n C 2 26 GLY 26 26 26 GLY GLY A . n C 2 27 THR 27 27 27 THR THR A . n C 2 28 THR 28 28 28 THR THR A . n C 2 29 ALA 29 29 29 ALA ALA A . n C 2 30 HIS 30 30 30 HIS HIS A . n C 2 31 VAL 31 31 31 VAL VAL A . n C 2 32 LEU 32 32 32 LEU LEU A . n C 2 33 GLY 33 33 33 GLY GLY A . n C 2 34 LYS 34 34 34 LYS LYS A . n C 2 35 GLU 35 35 35 GLU GLU A . n C 2 36 VAL 36 36 36 VAL VAL A . n C 2 37 ALA 37 37 37 ALA ALA A . n C 2 38 GLY 38 38 38 GLY GLY A . n C 2 39 ASN 39 39 39 ASN ASN A . n C 2 40 PRO 40 40 40 PRO PRO A . n C 2 41 TRP 41 41 41 TRP TRP A . n C 2 42 VAL 42 42 42 VAL VAL A . n C 2 43 ALA 43 43 43 ALA ALA A . n C 2 44 LYS 44 44 44 LYS LYS A . n C 2 45 ALA 45 45 45 ALA ALA A . n C 2 46 ILE 46 46 46 ILE ILE A . n C 2 47 ASP 47 47 47 ASP ASP A . n C 2 48 LYS 48 48 48 LYS LYS A . n C 2 49 LEU 49 49 49 LEU LEU A . n C 2 50 SER 50 50 50 SER SER A . n C 2 51 TYR 51 51 51 TYR TYR A . n C 2 52 GLN 52 52 52 GLN GLN A . n C 2 53 GLU 53 53 53 GLU GLU A . n C 2 54 THR 54 54 54 THR THR A . n C 2 55 TYR 55 55 55 TYR TYR A . n C 2 56 ASN 56 56 56 ASN ASN A . n C 2 57 TRP 57 57 57 TRP TRP A . n C 2 58 ILE 58 58 58 ILE ILE A . n C 2 59 SER 59 59 59 SER SER A . n C 2 60 ASP 60 60 60 ASP ASP A . n C 2 61 TYR 61 61 61 TYR TYR A . n C 2 62 GLN 62 62 62 GLN GLN A . n C 2 63 ALA 63 63 63 ALA ALA A . n C 2 64 SER 64 64 64 SER SER A . n C 2 65 HIS 65 65 65 HIS HIS A . n C 2 66 LEU 66 66 66 LEU LEU A . n C 2 67 ALA 67 67 67 ALA ALA A . n C 2 68 LYS 68 68 68 LYS LYS A . n C 2 69 GLN 69 69 69 GLN GLN A . n C 2 70 VAL 70 70 70 VAL VAL A . n C 2 71 ALA 71 71 71 ALA ALA A . n C 2 72 LYS 72 72 72 LYS LYS A . n C 2 73 GLN 73 73 73 GLN GLN A . n C 2 74 VAL 74 74 74 VAL VAL A . n C 2 75 ALA 75 75 75 ALA ALA A . n C 2 76 GLU 76 76 76 GLU GLU A . n C 2 77 LYS 77 77 77 LYS LYS A . n C 2 78 TYR 78 78 78 TYR TYR A . n C 2 79 GLY 79 79 79 GLY GLY A . n C 2 80 ILE 80 80 80 ILE ILE A . n C 2 81 PRO 81 81 81 PRO PRO A . n C 2 82 PRO 82 82 82 PRO PRO A . n C 2 83 THR 83 83 83 THR THR A . n C 2 84 PHE 84 84 84 PHE PHE A . n C 2 85 GLN 85 85 85 GLN GLN A . n C 2 86 GLY 86 86 86 GLY GLY A . n C 2 87 LEU 87 87 87 LEU LEU A . n C 2 88 LEU 88 88 88 LEU LEU A . n C 2 89 MET 89 89 89 MET MET A . n C 2 90 ALA 90 90 90 ALA ALA A . n C 2 91 TYR 91 91 91 TYR TYR A . n C 2 92 ALA 92 92 92 ALA ALA A . n C 2 93 GLU 93 93 93 GLU GLU A . n C 2 94 LYS 94 94 94 LYS LYS A . n C 2 95 VAL 95 95 95 VAL VAL A . n C 2 96 VAL 96 96 96 VAL VAL A . n C 2 97 ALA 97 97 97 ALA ALA A . n C 2 98 ASN 98 98 98 ASN ASN A . n C 2 99 TYR 99 99 99 TYR TYR A . n C 2 100 ILE 100 100 100 ILE ILE A . n C 2 101 LEU 101 101 101 LEU LEU A . n C 2 102 ASP 102 102 102 ASP ASP A . n C 2 103 TYR 103 103 103 TYR TYR A . n C 2 104 LYS 104 104 104 LYS LYS A . n C 2 105 GLY 105 105 105 GLY GLY A . n C 2 106 GLU 106 106 106 GLU GLU A . n C 2 107 SER 107 107 107 SER SER A . n C 2 108 LEU 108 108 108 LEU LEU A . n C 2 109 THR 109 109 109 THR THR A . n C 2 110 GLN 110 110 110 GLN GLN A . n C 2 111 MET 111 111 111 MET MET A . n C 2 112 HIS 112 112 112 HIS HIS A . n C 2 113 ASP 113 113 113 ASP ASP A . n C 2 114 ASN 114 114 114 ASN ASN A . n C 2 115 TYR 115 115 115 TYR TYR A . n C 2 116 LEU 116 116 116 LEU LEU A . n C 2 117 TYR 117 117 117 TYR TYR A . n C 2 118 GLU 118 118 118 GLU GLU A . n C 2 119 LEU 119 119 119 LEU LEU A . n C 2 120 MET 120 120 120 MET MET A . n C 2 121 GLN 121 121 121 GLN GLN A . n C 2 122 LYS 122 122 122 LYS LYS A . n C 2 123 MET 123 123 123 MET MET A . n C 2 124 PRO 124 124 124 PRO PRO A . n C 2 125 ILE 125 125 ? ? ? A . n C 2 126 ALA 126 126 ? ? ? A . n C 2 127 PRO 127 127 ? ? ? A . n C 2 128 THR 128 128 ? ? ? A . n C 2 129 GLY 129 129 ? ? ? A . n C 2 130 THR 130 130 ? ? ? A . n C 2 131 SER 131 131 131 SER SER A . n C 2 132 SER 132 132 132 SER SER A . n C 2 133 GLY 133 133 133 GLY GLY A . n C 2 134 TYR 134 134 134 TYR TYR A . n C 2 135 ILE 135 135 135 ILE ILE A . n C 2 136 TYR 136 136 136 TYR TYR A . n C 2 137 VAL 137 137 137 VAL VAL A . n C 2 138 PHE 138 138 138 PHE PHE A . n C 2 139 ILE 139 139 139 ILE ILE A . n C 2 140 GLY 140 140 140 GLY GLY A . n C 2 141 LYS 141 141 141 LYS LYS A . n C 2 142 ASP 142 142 142 ASP ASP A . n C 2 143 GLY 143 143 143 GLY GLY A . n C 2 144 LYS 144 144 144 LYS LYS A . n C 2 145 THR 145 145 145 THR THR A . n C 2 146 HIS 146 146 146 HIS HIS A . n C 2 147 THR 147 147 147 THR THR A . n C 2 148 VAL 148 148 148 VAL VAL A . n C 2 149 ASP 149 149 149 ASP ASP A . n C 2 150 MET 150 150 150 MET MET A . n C 2 151 SER 151 151 151 SER SER A . n C 2 152 LYS 152 152 152 LYS LYS A . n C 2 153 VAL 153 153 153 VAL VAL A . n C 2 154 LEU 154 154 154 LEU LEU A . n C 2 155 THR 155 155 155 THR THR A . n C 2 156 ASP 156 156 156 ASP ASP A . n C 2 157 ILE 157 157 157 ILE ILE A . n C 2 158 GLU 158 158 158 GLU GLU A . n C 2 159 ASP 159 159 159 ASP ASP A . n C 2 160 ALA 160 160 160 ALA ALA A . n C 2 161 LEU 161 161 161 LEU LEU A . n C 2 162 LEU 162 162 162 LEU LEU A . n C 2 163 LYS 163 163 163 LYS LYS A . n C 2 164 ARG 164 164 164 ARG ARG A . n C 2 165 ALA 165 165 165 ALA ALA A . n D 3 1 MET 1 1 ? ? ? a . n D 3 2 ALA 2 2 ? ? ? a . n D 3 3 GLY 3 3 3 GLY GLY a . n D 3 4 ARG 4 4 4 ARG ARG a . n D 3 5 GLN 5 5 5 GLN GLN a . n D 3 6 ALA 6 6 6 ALA ALA a . n D 3 7 HIS 7 7 7 HIS HIS a . n D 3 8 ARG 8 8 8 ARG ARG a . n D 3 9 LYS 9 9 9 LYS LYS a . n D 3 10 PHE 10 10 10 PHE PHE a . n D 3 11 ASP 11 11 11 ASP ASP a . n D 3 12 VAL 12 12 12 VAL VAL a . n D 3 13 ARG 13 13 13 ARG ARG a . n D 3 14 ASN 14 14 14 ASN ASN a . n D 3 15 ASP 15 15 15 ASP ASP a . n D 3 16 THR 16 16 16 THR THR a . n D 3 17 SER 17 17 17 SER SER a . n D 3 18 THR 18 18 18 THR THR a . n D 3 19 ARG 19 19 19 ARG ARG a . n D 3 20 TRP 20 20 20 TRP TRP a . n D 3 21 LYS 21 21 21 LYS LYS a . n D 3 22 GLY 22 22 22 GLY GLY a . n D 3 23 LYS 23 23 23 LYS LYS a . n D 3 24 LEU 24 24 24 LEU LEU a . n D 3 25 TYR 25 25 25 TYR TYR a . n D 3 26 GLY 26 26 26 GLY GLY a . n D 3 27 ILE 27 27 27 ILE ILE a . n D 3 28 PHE 28 28 28 PHE PHE a . n D 3 29 VAL 29 29 29 VAL VAL a . n D 3 30 ASN 30 30 30 ASN ASN a . n D 3 31 TYR 31 31 31 TYR TYR a . n D 3 32 MET 32 32 32 MET MET a . n D 3 33 GLY 33 33 33 GLY GLY a . n D 3 34 GLU 34 34 34 GLU GLU a . n D 3 35 ASP 35 35 35 ASP ASP a . n D 3 36 TYR 36 36 36 TYR TYR a . n D 3 37 ALA 37 37 37 ALA ALA a . n D 3 38 LYS 38 38 38 LYS LYS a . n D 3 39 GLU 39 39 39 GLU GLU a . n D 3 40 PHE 40 40 40 PHE PHE a . n D 3 41 VAL 41 41 41 VAL VAL a . n D 3 42 GLU 42 42 42 GLU GLU a . n D 3 43 GLN 43 43 43 GLN GLN a . n D 3 44 ALA 44 44 44 ALA ALA a . n D 3 45 TYR 45 45 45 TYR TYR a . n D 3 46 SER 46 46 46 SER SER a . n D 3 47 ASN 47 47 47 ASN ASN a . n D 3 48 TYR 48 48 48 TYR TYR a . n D 3 49 GLU 49 49 49 GLU GLU a . n D 3 50 LYS 50 50 50 LYS LYS a . n D 3 51 VAL 51 51 51 VAL VAL a . n D 3 52 PHE 52 52 52 PHE PHE a . n D 3 53 VAL 53 53 53 VAL VAL a . n D 3 54 ASN 54 54 54 ASN ASN a . n D 3 55 ILE 55 55 55 ILE ILE a . n D 3 56 TYR 56 56 56 TYR TYR a . n D 3 57 THR 57 57 57 THR THR a . n D 3 58 LYS 58 58 58 LYS LYS a . n D 3 59 ILE 59 59 59 ILE ILE a . n D 3 60 HIS 60 60 60 HIS HIS a . n D 3 61 ASN 61 61 61 ASN ASN a . n D 3 62 GLN 62 62 62 GLN GLN a . n D 3 63 LEU 63 63 63 LEU LEU a . n D 3 64 ARG 64 64 64 ARG ARG a . n D 3 65 THR 65 65 65 THR THR a . n D 3 66 THR 66 66 66 THR THR a . n D 3 67 LEU 67 67 67 LEU LEU a . n D 3 68 THR 68 68 68 THR THR a . n D 3 69 SER 69 69 69 SER SER a . n D 3 70 SER 70 70 70 SER SER a . n D 3 71 ALA 71 71 71 ALA ALA a . n D 3 72 GLY 72 72 72 GLY GLY a . n D 3 73 ALA 73 73 73 ALA ALA a . n D 3 74 GLY 74 74 74 GLY GLY a . n D 3 75 ALA 75 75 75 ALA ALA a . n D 3 76 THR 76 76 76 THR THR a . n D 3 77 PHE 77 77 77 PHE PHE a . n D 3 78 PRO 78 78 78 PRO PRO a . n D 3 79 LEU 79 79 79 LEU LEU a . n D 3 80 TRP 80 80 80 TRP TRP a . n D 3 81 GLN 81 81 81 GLN GLN a . n D 3 82 ILE 82 82 82 ILE ILE a . n D 3 83 ILE 83 83 83 ILE ILE a . n D 3 84 ASN 84 84 84 ASN ASN a . n D 3 85 GLU 85 85 85 GLU GLU a . n D 3 86 ALA 86 86 86 ALA ALA a . n D 3 87 ILE 87 87 87 ILE ILE a . n D 3 88 TYR 88 88 88 TYR TYR a . n D 3 89 ALA 89 89 89 ALA ALA a . n D 3 90 VAL 90 90 90 VAL VAL a . n D 3 91 TYR 91 91 91 TYR TYR a . n D 3 92 LEU 92 92 92 LEU LEU a . n D 3 93 THR 93 93 93 THR THR a . n D 3 94 HIS 94 94 94 HIS HIS a . n D 3 95 LYS 95 95 95 LYS LYS a . n D 3 96 GLU 96 96 96 GLU GLU a . n D 3 97 THR 97 97 97 THR THR a . n D 3 98 ALA 98 98 98 ALA ALA a . n D 3 99 SER 99 99 99 SER SER a . n D 3 100 PHE 100 100 100 PHE PHE a . n D 3 101 LEU 101 101 101 LEU LEU a . n D 3 102 TYR 102 102 102 TYR TYR a . n D 3 103 ALA 103 103 103 ALA ALA a . n D 3 104 LYS 104 104 104 LYS LYS a . n D 3 105 TYR 105 105 105 TYR TYR a . n D 3 106 VAL 106 106 106 VAL VAL a . n D 3 107 ALA 107 107 107 ALA ALA a . n D 3 108 ARG 108 108 108 ARG ARG a . n D 3 109 GLY 109 109 109 GLY GLY a . n D 3 110 ILE 110 110 110 ILE ILE a . n D 3 111 GLN 111 111 111 GLN GLN a . n D 3 112 PRO 112 112 112 PRO PRO a . n D 3 113 ASN 113 113 113 ASN ASN a . n D 3 114 VAL 114 114 114 VAL VAL a . n D 3 115 VAL 115 115 115 VAL VAL a . n D 3 116 LYS 116 116 116 LYS LYS a . n D 3 117 LYS 117 117 117 LYS LYS a . n D 3 118 ILE 118 118 118 ILE ILE a . n D 3 119 LEU 119 119 119 LEU LEU a . n D 3 120 ALA 120 120 120 ALA ALA a . n D 3 121 GLU 121 121 121 GLU GLU a . n D 3 122 THR 122 122 122 THR THR a . n D 3 123 GLY 123 123 123 GLY GLY a . n D 3 124 ASN 124 124 124 ASN ASN a . n D 3 125 ALA 125 125 125 ALA ALA a . n D 3 126 LEU 126 126 126 LEU LEU a . n D 3 127 LYS 127 127 127 LYS LYS a . n D 3 128 GLY 128 128 128 GLY GLY a . n D 3 129 ILE 129 129 129 ILE ILE a . n D 3 130 VAL 130 130 130 VAL VAL a . n D 3 131 PRO 131 131 131 PRO PRO a . n D 3 132 ALA 132 132 132 ALA ALA a . n D 3 133 VAL 133 133 133 VAL VAL a . n D 3 134 ALA 134 134 134 ALA ALA a . n D 3 135 GLN 135 135 135 GLN GLN a . n D 3 136 GLU 136 136 136 GLU GLU a . n D 3 137 LEU 137 137 137 LEU LEU a . n D 3 138 GLY 138 138 138 GLY GLY a . n D 3 139 GLU 139 139 139 GLU GLU a . n D 3 140 THR 140 140 140 THR THR a . n D 3 141 VAL 141 141 141 VAL VAL a . n D 3 142 LEU 142 142 142 LEU LEU a . n D 3 143 ASP 143 143 143 ASP ASP a . n D 3 144 GLU 144 144 144 GLU GLU a . n D 3 145 SER 145 145 145 SER SER a . n D 3 146 ASN 146 146 146 ASN ASN a . n D 3 147 VAL 147 147 147 VAL VAL a . n D 3 148 ILE 148 148 148 ILE ILE a . n D 3 149 SER 149 149 149 SER SER a . n D 3 150 VAL 150 150 150 VAL VAL a . n D 3 151 VAL 151 151 151 VAL VAL a . n D 3 152 ASP 152 152 152 ASP ASP a . n D 3 153 ASP 153 153 153 ASP ASP a . n D 3 154 ILE 154 154 154 ILE ILE a . n D 3 155 VAL 155 155 155 VAL VAL a . n D 3 156 ARG 156 156 156 ARG ARG a . n D 3 157 LYS 157 157 157 LYS LYS a . n D 3 158 ASN 158 158 158 ASN ASN a . n D 3 159 PRO 159 159 159 PRO PRO a . n D 3 160 ALA 160 160 160 ALA ALA a . n D 3 161 LEU 161 161 161 LEU LEU a . n D 3 162 PRO 162 162 162 PRO PRO a . n D 3 163 ASN 163 163 163 ASN ASN a . n D 3 164 SER 164 164 164 SER SER a . n D 3 165 TYR 165 165 165 TYR TYR a . n D 3 166 ALA 166 166 166 ALA ALA a . n D 3 167 GLY 167 167 167 GLY GLY a . n D 3 168 ILE 168 168 168 ILE ILE a . n D 3 169 ILE 169 169 169 ILE ILE a . n D 3 170 LEU 170 170 170 LEU LEU a . n D 3 171 GLN 171 171 171 GLN GLN a . n D 3 172 GLU 172 172 172 GLU GLU a . n D 3 173 ALA 173 173 173 ALA ALA a . n D 3 174 ARG 174 174 174 ARG ARG a . n D 3 175 ILE 175 175 175 ILE ILE a . n D 3 176 SER 176 176 176 SER SER a . n D 3 177 THR 177 177 177 THR THR a . n D 3 178 THR 178 178 178 THR THR a . n D 3 179 PRO 179 179 179 PRO PRO a . n D 3 180 HIS 180 180 180 HIS HIS a . n D 3 181 TYR 181 181 181 TYR TYR a . n D 3 182 GLU 182 182 182 GLU GLU a . n D 3 183 GLY 183 183 183 GLY GLY a . n D 3 184 THR 184 184 184 THR THR a . n D 3 185 GLU 185 185 185 GLU GLU a . n D 3 186 GLY 186 186 186 GLY GLY a . n D 3 187 PHE 187 187 187 PHE PHE a . n D 3 188 SER 188 188 188 SER SER a . n D 3 189 SER 189 189 189 SER SER a . n D 3 190 MET 190 190 190 MET MET a . n D 3 191 GLU 191 191 191 GLU GLU a . n D 3 192 SER 192 192 192 SER SER a . n D 3 193 ALA 193 193 193 ALA ALA a . n D 3 194 TYR 194 194 194 TYR TYR a . n D 3 195 SER 195 195 195 SER SER a . n D 3 196 ALA 196 196 196 ALA ALA a . n D 3 197 LEU 197 197 197 LEU LEU a . n D 3 198 GLU 198 198 198 GLU GLU a . n D 3 199 GLU 199 199 199 GLU GLU a . n D 3 200 ILE 200 200 200 ILE ILE a . n D 3 201 GLU 201 201 201 GLU GLU a . n D 3 202 LYS 202 202 ? ? ? a . n D 3 203 GLY 203 203 ? ? ? a . n D 3 204 LEU 204 204 ? ? ? a . n # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 a ARG 4 ? CG ? D ARG 4 CG 2 1 Y 1 a ARG 4 ? CD ? D ARG 4 CD 3 1 Y 1 a ARG 4 ? NE ? D ARG 4 NE 4 1 Y 1 a ARG 4 ? CZ ? D ARG 4 CZ 5 1 Y 1 a ARG 4 ? NH1 ? D ARG 4 NH1 6 1 Y 1 a ARG 4 ? NH2 ? D ARG 4 NH2 7 1 Y 1 a GLN 5 ? CG ? D GLN 5 CG 8 1 Y 1 a GLN 5 ? CD ? D GLN 5 CD 9 1 Y 1 a GLN 5 ? OE1 ? D GLN 5 OE1 10 1 Y 1 a GLN 5 ? NE2 ? D GLN 5 NE2 11 1 Y 1 a ARG 8 ? CG ? D ARG 8 CG 12 1 Y 1 a ARG 8 ? CD ? D ARG 8 CD 13 1 Y 1 a ARG 8 ? NE ? D ARG 8 NE 14 1 Y 1 a ARG 8 ? CZ ? D ARG 8 CZ 15 1 Y 1 a ARG 8 ? NH1 ? D ARG 8 NH1 16 1 Y 1 a ARG 8 ? NH2 ? D ARG 8 NH2 17 1 Y 1 a GLU 182 ? CG ? D GLU 182 CG 18 1 Y 1 a GLU 182 ? CD ? D GLU 182 CD 19 1 Y 1 a GLU 182 ? OE1 ? D GLU 182 OE1 20 1 Y 1 a GLU 182 ? OE2 ? D GLU 182 OE2 21 1 Y 1 a GLU 185 ? CG ? D GLU 185 CG 22 1 Y 1 a GLU 185 ? CD ? D GLU 185 CD 23 1 Y 1 a GLU 185 ? OE1 ? D GLU 185 OE1 24 1 Y 1 a GLU 185 ? OE2 ? D GLU 185 OE2 25 1 Y 1 a MET 190 ? CG ? D MET 190 CG 26 1 Y 1 a MET 190 ? SD ? D MET 190 SD 27 1 Y 1 a MET 190 ? CE ? D MET 190 CE # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.19.2_4158: _software.pdbx_ordinal 1 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7TXJ _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 7TXJ _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.006 ? 101010 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.781 ? 139950 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 17.138 ? 18600 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.045 ? 15690 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.005 ? 15240 ? f_plane_restr ? ? # _struct.entry_id 7TXJ _struct.title 'Cryo-EM of AFV6' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7TXJ _struct_keywords.text 'helical symmetry, archaeal virus, VIRUS' _struct_keywords.pdbx_keywords VIRUS # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 7TXJ 7TXJ ? 1 ? 1 2 UNP A7WKI9_9VIRU A7WKI9 ? 2 ;MAGKKRRLSQASVLRYYAKRFTMNVGTTAHVLGKEVAGNPWVAKAIDKLSYQETYNWISDYQASHLAKQVAKQVAEKYGI PPTFQGLLMAYAEKVVANYILDYKGESLTQMHDNYLYELMQKMPIAPTGTSSGYIYVFIGKDGKTHTVDMSKVLTDIEDA LLKRA ; 1 3 UNP A7WKJ0_9VIRU A7WKJ0 ? 3 ;MAGRQAHRKFDVRNDTSTRWKGKLYGIFVNYMGEDYAKEFVEQAYSNYEKVFVNIYTKIHNQLRTTLTSSAGAGATFPLW QIINEAIYAVYLTHKETASFLYAKYVARGIQPNVVKKILAETGNALKGIVPAVAQELGETVLDESNVISVVDDIVRKNPA LPNSYAGIILQEARISTTPHYEGTEGFSSMESAYSALEEIEKGL ; 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7TXJ 1 1 ? 12 ? 7TXJ 1 ? 12 ? 1 12 2 1 7TXJ 2 1 ? 12 ? 7TXJ 1 ? 12 ? 1 12 3 2 7TXJ A 1 ? 165 ? A7WKI9 1 ? 165 ? 1 165 4 3 7TXJ a 1 ? 204 ? A7WKJ0 1 ? 204 ? 1 204 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'representative helical assembly' ? 120-meric 120 2 'helical asymmetric unit' ? tetrameric 4 3 'helical asymmetric unit, std helical frame' ? tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-30)' A,B,C,D 2 16 A,B,C,D 3 H A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support microscopy _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] H 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 1 'helical symmetry operation' ? ? -0.79952744 -0.60062956 0.00000000 0.00000 0.60062956 -0.79952744 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -86.25000 2 'helical symmetry operation' ? ? -0.99963599 0.02697952 0.00000000 0.00000 -0.02697952 -0.99963599 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -80.50000 3 'helical symmetry operation' ? ? -0.76596591 0.64288119 0.00000000 0.00000 -0.64288119 -0.76596591 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -74.75000 4 'helical symmetry operation' ? ? -0.19991520 0.97981320 0.00000000 0.00000 -0.97981320 -0.19991520 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -69.00000 5 'helical symmetry operation' ? ? 0.45288603 0.89156842 0.00000000 0.00000 -0.89156842 0.45288603 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -63.25000 6 'helical symmetry operation' ? ? 0.90916344 0.41643948 0.00000000 0.00000 -0.41643948 0.90916344 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -57.50000 7 'helical symmetry operation' ? ? 0.97092157 -0.23939779 0.00000000 0.00000 0.23939779 0.97092157 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -51.75000 8 'helical symmetry operation' ? ? 0.61136131 -0.79135159 0.00000000 0.00000 0.79135159 0.61136131 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -46.00000 9 'helical symmetry operation' ? ? -0.01349099 -0.99990899 0.00000000 0.00000 0.99990899 -0.01349099 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -40.25000 10 'helical symmetry operation' ? ? -0.63248905 -0.77456930 0.00000000 0.00000 0.77456930 -0.63248905 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -34.50000 11 'helical symmetry operation' ? ? -0.97702698 -0.21311565 0.00000000 0.00000 0.21311565 -0.97702698 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -28.75000 12 'helical symmetry operation' ? ? -0.89759716 0.44081668 0.00000000 0.00000 -0.44081668 -0.89759716 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -23.00000 13 'helical symmetry operation' ? ? -0.42866709 0.90346252 0.00000000 0.00000 -0.90346252 -0.42866709 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -17.25000 14 'helical symmetry operation' ? ? 0.22627731 0.97406292 0.00000000 0.00000 -0.97406292 0.22627731 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -11.50000 15 'helical symmetry operation' ? ? 0.78303171 0.62198179 0.00000000 0.00000 -0.62198179 0.78303171 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -5.75000 16 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 17 'helical symmetry operation' ? ? 0.78303171 -0.62198179 0.00000000 0.00000 0.62198179 0.78303171 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 5.75000 18 'helical symmetry operation' ? ? 0.22627731 -0.97406292 0.00000000 0.00000 0.97406292 0.22627731 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 11.50000 19 'helical symmetry operation' ? ? -0.42866709 -0.90346252 0.00000000 0.00000 0.90346252 -0.42866709 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 17.25000 20 'helical symmetry operation' ? ? -0.89759716 -0.44081668 0.00000000 0.00000 0.44081668 -0.89759716 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 23.00000 21 'helical symmetry operation' ? ? -0.97702698 0.21311565 0.00000000 0.00000 -0.21311565 -0.97702698 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 28.75000 22 'helical symmetry operation' ? ? -0.63248905 0.77456930 0.00000000 0.00000 -0.77456930 -0.63248905 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 34.50000 23 'helical symmetry operation' ? ? -0.01349099 0.99990899 0.00000000 0.00000 -0.99990899 -0.01349099 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 40.25000 24 'helical symmetry operation' ? ? 0.61136131 0.79135159 0.00000000 0.00000 -0.79135159 0.61136131 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 46.00000 25 'helical symmetry operation' ? ? 0.97092157 0.23939779 0.00000000 0.00000 -0.23939779 0.97092157 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 51.75000 26 'helical symmetry operation' ? ? 0.90916344 -0.41643948 0.00000000 0.00000 0.41643948 0.90916344 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 57.50000 27 'helical symmetry operation' ? ? 0.45288603 -0.89156842 0.00000000 0.00000 0.89156842 0.45288603 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 63.25000 28 'helical symmetry operation' ? ? -0.19991520 -0.97981320 0.00000000 0.00000 0.97981320 -0.19991520 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 69.00000 29 'helical symmetry operation' ? ? -0.76596591 -0.64288119 0.00000000 0.00000 0.64288119 -0.76596591 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 74.75000 30 'helical symmetry operation' ? ? -0.99963599 -0.02697952 0.00000000 0.00000 0.02697952 -0.99963599 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 80.50000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLN C 10 ? LYS C 19 ? GLN A 10 LYS A 19 1 ? 10 HELX_P HELX_P2 AA2 LYS C 19 ? ALA C 29 ? LYS A 19 ALA A 29 1 ? 11 HELX_P HELX_P3 AA3 GLY C 33 ? GLY C 38 ? GLY A 33 GLY A 38 1 ? 6 HELX_P HELX_P4 AA4 ASN C 39 ? ASP C 60 ? ASN A 39 ASP A 60 1 ? 22 HELX_P HELX_P5 AA5 TYR C 61 ? TYR C 78 ? TYR A 61 TYR A 78 1 ? 18 HELX_P HELX_P6 AA6 PRO C 81 ? ALA C 97 ? PRO A 81 ALA A 97 1 ? 17 HELX_P HELX_P7 AA7 SER C 107 ? TYR C 117 ? SER A 107 TYR A 117 1 ? 11 HELX_P HELX_P8 AA8 MET C 150 ? ALA C 165 ? MET A 150 ALA A 165 1 ? 16 HELX_P HELX_P9 AA9 ASP D 15 ? GLY D 33 ? ASP a 15 GLY a 33 1 ? 19 HELX_P HELX_P10 AB1 GLY D 33 ? GLY D 72 ? GLY a 33 GLY a 72 1 ? 40 HELX_P HELX_P11 AB2 THR D 76 ? ALA D 89 ? THR a 76 ALA a 89 1 ? 14 HELX_P HELX_P12 AB3 THR D 97 ? ALA D 107 ? THR a 97 ALA a 107 1 ? 11 HELX_P HELX_P13 AB4 GLN D 111 ? VAL D 130 ? GLN a 111 VAL a 130 1 ? 20 HELX_P HELX_P14 AB5 VAL D 130 ? GLY D 138 ? VAL a 130 GLY a 138 1 ? 9 HELX_P HELX_P15 AB6 ASN D 146 ? ASN D 158 ? ASN a 146 ASN a 158 1 ? 13 HELX_P HELX_P16 AB7 MET D 190 ? ILE D 200 ? MET a 190 ILE a 200 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DT 1 O4 ? ? ? 1_555 B DA 12 N6 ? ? 1 DT 1 2 DA 12 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog2 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B DT 11 O4 ? ? 1 DA 2 2 DT 11 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog3 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 10 N6 ? ? 1 DT 3 2 DA 10 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog4 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DT 7 O4 ? ? 1 DT 7 2 DT 7 1_555 ? ? ? ? ? ? 'DT-DT MISPAIR' ? ? ? hydrog5 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DA 6 N1 ? ? 1 DA 8 2 DA 6 1_555 ? ? ? ? ? ? 'DA-DA MISPAIR' ? ? ? hydrog6 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DT 5 N3 ? ? 1 DT 9 2 DT 5 1_555 ? ? ? ? ? ? 'DT-DT MISPAIR' ? ? ? hydrog7 hydrog ? ? A DA 12 N1 ? ? ? 1_555 B DA 2 N6 ? ? 1 DA 12 2 DA 2 1_555 ? ? ? ? ? ? 'DA-DA MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA1 _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ILE C 135 ? ILE C 139 ? ILE A 135 ILE A 139 AA1 2 THR C 145 ? ASP C 149 ? THR A 145 ASP A 149 # _pdbx_struct_sheet_hbond.sheet_id AA1 _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id PHE _pdbx_struct_sheet_hbond.range_1_label_asym_id C _pdbx_struct_sheet_hbond.range_1_label_seq_id 138 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id PHE _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 138 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id HIS _pdbx_struct_sheet_hbond.range_2_label_asym_id C _pdbx_struct_sheet_hbond.range_2_label_seq_id 146 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id HIS _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 146 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 a _pdbx_validate_close_contact.auth_comp_id_1 PRO _pdbx_validate_close_contact.auth_seq_id_1 78 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OH _pdbx_validate_close_contact.auth_asym_id_2 a _pdbx_validate_close_contact.auth_comp_id_2 TYR _pdbx_validate_close_contact.auth_seq_id_2 105 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.09 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" 2 DA 10 ? ? "C1'" 2 DA 10 ? ? N9 2 DA 10 ? ? 110.56 108.30 2.26 0.30 N 2 1 "O4'" 2 DT 11 ? ? "C1'" 2 DT 11 ? ? N1 2 DT 11 ? ? 110.50 108.30 2.20 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 10 ? ? 53.19 -73.06 2 1 ASN a 14 ? ? 63.13 -0.59 3 1 VAL a 51 ? ? -92.71 -61.45 4 1 ILE a 55 ? ? -122.58 -64.01 5 1 ALA a 73 ? ? -170.16 -175.60 6 1 LEU a 92 ? ? 71.80 -11.85 7 1 PRO a 179 ? ? -62.94 0.64 8 1 TYR a 181 ? ? -58.62 -71.05 9 1 GLU a 182 ? ? 150.29 -23.16 10 1 GLU a 185 ? ? -61.90 -73.84 11 1 PHE a 187 ? ? 62.42 70.42 # _pdbx_helical_symmetry.entry_id 7TXJ _pdbx_helical_symmetry.number_of_operations 30 _pdbx_helical_symmetry.rotation_per_n_subunits 38.461000 _pdbx_helical_symmetry.rise_per_n_subunits 5.750000 _pdbx_helical_symmetry.n_subunits_divisor 1 _pdbx_helical_symmetry.dyad_axis no _pdbx_helical_symmetry.circular_symmetry 1 # _em_3d_fitting.entry_id 7TXJ _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7TXJ _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 78141 _em_3d_reconstruction.resolution 3.9 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type HELICAL _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 6 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'Acidianus filamentous virus 6' _em_entity_assembly.source NATURAL _em_entity_assembly.type VIRUS _em_entity_assembly.entity_id_list '1, 2, 3' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 7TXJ _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max 3000 _em_imaging.nominal_defocus_min 500 _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_virus_entity.entity_assembly_id 1 _em_virus_entity.empty NO _em_virus_entity.enveloped YES _em_virus_entity.virus_isolate STRAIN _em_virus_entity.virus_type VIRION _em_virus_entity.id 1 _em_virus_entity.virus_host_category ? _em_virus_entity.details ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 7TXJ _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7TXJ _em_experiment.id 1 _em_experiment.aggregation_state FILAMENT _em_experiment.reconstruction_method HELICAL _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? C MET 1 2 1 Y 1 A ALA 2 ? C ALA 2 3 1 Y 1 A GLY 3 ? C GLY 3 4 1 Y 1 A LYS 4 ? C LYS 4 5 1 Y 1 A LYS 5 ? C LYS 5 6 1 Y 1 A ARG 6 ? C ARG 6 7 1 Y 1 A ILE 125 ? C ILE 125 8 1 Y 1 A ALA 126 ? C ALA 126 9 1 Y 1 A PRO 127 ? C PRO 127 10 1 Y 1 A THR 128 ? C THR 128 11 1 Y 1 A GLY 129 ? C GLY 129 12 1 Y 1 A THR 130 ? C THR 130 13 1 Y 1 a MET 1 ? D MET 1 14 1 Y 1 a ALA 2 ? D ALA 2 15 1 Y 1 a LYS 202 ? D LYS 202 16 1 Y 1 a GLY 203 ? D GLY 203 17 1 Y 1 a LEU 204 ? D LEU 204 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DA OP3 O N N 74 DA P P N N 75 DA OP1 O N N 76 DA OP2 O N N 77 DA "O5'" O N N 78 DA "C5'" C N N 79 DA "C4'" C N R 80 DA "O4'" O N N 81 DA "C3'" C N S 82 DA "O3'" O N N 83 DA "C2'" C N N 84 DA "C1'" C N R 85 DA N9 N Y N 86 DA C8 C Y N 87 DA N7 N Y N 88 DA C5 C Y N 89 DA C6 C Y N 90 DA N6 N N N 91 DA N1 N Y N 92 DA C2 C Y N 93 DA N3 N Y N 94 DA C4 C Y N 95 DA HOP3 H N N 96 DA HOP2 H N N 97 DA "H5'" H N N 98 DA "H5''" H N N 99 DA "H4'" H N N 100 DA "H3'" H N N 101 DA "HO3'" H N N 102 DA "H2'" H N N 103 DA "H2''" H N N 104 DA "H1'" H N N 105 DA H8 H N N 106 DA H61 H N N 107 DA H62 H N N 108 DA H2 H N N 109 DT OP3 O N N 110 DT P P N N 111 DT OP1 O N N 112 DT OP2 O N N 113 DT "O5'" O N N 114 DT "C5'" C N N 115 DT "C4'" C N R 116 DT "O4'" O N N 117 DT "C3'" C N S 118 DT "O3'" O N N 119 DT "C2'" C N N 120 DT "C1'" C N R 121 DT N1 N N N 122 DT C2 C N N 123 DT O2 O N N 124 DT N3 N N N 125 DT C4 C N N 126 DT O4 O N N 127 DT C5 C N N 128 DT C7 C N N 129 DT C6 C N N 130 DT HOP3 H N N 131 DT HOP2 H N N 132 DT "H5'" H N N 133 DT "H5''" H N N 134 DT "H4'" H N N 135 DT "H3'" H N N 136 DT "HO3'" H N N 137 DT "H2'" H N N 138 DT "H2''" H N N 139 DT "H1'" H N N 140 DT H3 H N N 141 DT H71 H N N 142 DT H72 H N N 143 DT H73 H N N 144 DT H6 H N N 145 GLN N N N N 146 GLN CA C N S 147 GLN C C N N 148 GLN O O N N 149 GLN CB C N N 150 GLN CG C N N 151 GLN CD C N N 152 GLN OE1 O N N 153 GLN NE2 N N N 154 GLN OXT O N N 155 GLN H H N N 156 GLN H2 H N N 157 GLN HA H N N 158 GLN HB2 H N N 159 GLN HB3 H N N 160 GLN HG2 H N N 161 GLN HG3 H N N 162 GLN HE21 H N N 163 GLN HE22 H N N 164 GLN HXT H N N 165 GLU N N N N 166 GLU CA C N S 167 GLU C C N N 168 GLU O O N N 169 GLU CB C N N 170 GLU CG C N N 171 GLU CD C N N 172 GLU OE1 O N N 173 GLU OE2 O N N 174 GLU OXT O N N 175 GLU H H N N 176 GLU H2 H N N 177 GLU HA H N N 178 GLU HB2 H N N 179 GLU HB3 H N N 180 GLU HG2 H N N 181 GLU HG3 H N N 182 GLU HE2 H N N 183 GLU HXT H N N 184 GLY N N N N 185 GLY CA C N N 186 GLY C C N N 187 GLY O O N N 188 GLY OXT O N N 189 GLY H H N N 190 GLY H2 H N N 191 GLY HA2 H N N 192 GLY HA3 H N N 193 GLY HXT H N N 194 HIS N N N N 195 HIS CA C N S 196 HIS C C N N 197 HIS O O N N 198 HIS CB C N N 199 HIS CG C Y N 200 HIS ND1 N Y N 201 HIS CD2 C Y N 202 HIS CE1 C Y N 203 HIS NE2 N Y N 204 HIS OXT O N N 205 HIS H H N N 206 HIS H2 H N N 207 HIS HA H N N 208 HIS HB2 H N N 209 HIS HB3 H N N 210 HIS HD1 H N N 211 HIS HD2 H N N 212 HIS HE1 H N N 213 HIS HE2 H N N 214 HIS HXT H N N 215 ILE N N N N 216 ILE CA C N S 217 ILE C C N N 218 ILE O O N N 219 ILE CB C N S 220 ILE CG1 C N N 221 ILE CG2 C N N 222 ILE CD1 C N N 223 ILE OXT O N N 224 ILE H H N N 225 ILE H2 H N N 226 ILE HA H N N 227 ILE HB H N N 228 ILE HG12 H N N 229 ILE HG13 H N N 230 ILE HG21 H N N 231 ILE HG22 H N N 232 ILE HG23 H N N 233 ILE HD11 H N N 234 ILE HD12 H N N 235 ILE HD13 H N N 236 ILE HXT H N N 237 LEU N N N N 238 LEU CA C N S 239 LEU C C N N 240 LEU O O N N 241 LEU CB C N N 242 LEU CG C N N 243 LEU CD1 C N N 244 LEU CD2 C N N 245 LEU OXT O N N 246 LEU H H N N 247 LEU H2 H N N 248 LEU HA H N N 249 LEU HB2 H N N 250 LEU HB3 H N N 251 LEU HG H N N 252 LEU HD11 H N N 253 LEU HD12 H N N 254 LEU HD13 H N N 255 LEU HD21 H N N 256 LEU HD22 H N N 257 LEU HD23 H N N 258 LEU HXT H N N 259 LYS N N N N 260 LYS CA C N S 261 LYS C C N N 262 LYS O O N N 263 LYS CB C N N 264 LYS CG C N N 265 LYS CD C N N 266 LYS CE C N N 267 LYS NZ N N N 268 LYS OXT O N N 269 LYS H H N N 270 LYS H2 H N N 271 LYS HA H N N 272 LYS HB2 H N N 273 LYS HB3 H N N 274 LYS HG2 H N N 275 LYS HG3 H N N 276 LYS HD2 H N N 277 LYS HD3 H N N 278 LYS HE2 H N N 279 LYS HE3 H N N 280 LYS HZ1 H N N 281 LYS HZ2 H N N 282 LYS HZ3 H N N 283 LYS HXT H N N 284 MET N N N N 285 MET CA C N S 286 MET C C N N 287 MET O O N N 288 MET CB C N N 289 MET CG C N N 290 MET SD S N N 291 MET CE C N N 292 MET OXT O N N 293 MET H H N N 294 MET H2 H N N 295 MET HA H N N 296 MET HB2 H N N 297 MET HB3 H N N 298 MET HG2 H N N 299 MET HG3 H N N 300 MET HE1 H N N 301 MET HE2 H N N 302 MET HE3 H N N 303 MET HXT H N N 304 PHE N N N N 305 PHE CA C N S 306 PHE C C N N 307 PHE O O N N 308 PHE CB C N N 309 PHE CG C Y N 310 PHE CD1 C Y N 311 PHE CD2 C Y N 312 PHE CE1 C Y N 313 PHE CE2 C Y N 314 PHE CZ C Y N 315 PHE OXT O N N 316 PHE H H N N 317 PHE H2 H N N 318 PHE HA H N N 319 PHE HB2 H N N 320 PHE HB3 H N N 321 PHE HD1 H N N 322 PHE HD2 H N N 323 PHE HE1 H N N 324 PHE HE2 H N N 325 PHE HZ H N N 326 PHE HXT H N N 327 PRO N N N N 328 PRO CA C N S 329 PRO C C N N 330 PRO O O N N 331 PRO CB C N N 332 PRO CG C N N 333 PRO CD C N N 334 PRO OXT O N N 335 PRO H H N N 336 PRO HA H N N 337 PRO HB2 H N N 338 PRO HB3 H N N 339 PRO HG2 H N N 340 PRO HG3 H N N 341 PRO HD2 H N N 342 PRO HD3 H N N 343 PRO HXT H N N 344 SER N N N N 345 SER CA C N S 346 SER C C N N 347 SER O O N N 348 SER CB C N N 349 SER OG O N N 350 SER OXT O N N 351 SER H H N N 352 SER H2 H N N 353 SER HA H N N 354 SER HB2 H N N 355 SER HB3 H N N 356 SER HG H N N 357 SER HXT H N N 358 THR N N N N 359 THR CA C N S 360 THR C C N N 361 THR O O N N 362 THR CB C N R 363 THR OG1 O N N 364 THR CG2 C N N 365 THR OXT O N N 366 THR H H N N 367 THR H2 H N N 368 THR HA H N N 369 THR HB H N N 370 THR HG1 H N N 371 THR HG21 H N N 372 THR HG22 H N N 373 THR HG23 H N N 374 THR HXT H N N 375 TRP N N N N 376 TRP CA C N S 377 TRP C C N N 378 TRP O O N N 379 TRP CB C N N 380 TRP CG C Y N 381 TRP CD1 C Y N 382 TRP CD2 C Y N 383 TRP NE1 N Y N 384 TRP CE2 C Y N 385 TRP CE3 C Y N 386 TRP CZ2 C Y N 387 TRP CZ3 C Y N 388 TRP CH2 C Y N 389 TRP OXT O N N 390 TRP H H N N 391 TRP H2 H N N 392 TRP HA H N N 393 TRP HB2 H N N 394 TRP HB3 H N N 395 TRP HD1 H N N 396 TRP HE1 H N N 397 TRP HE3 H N N 398 TRP HZ2 H N N 399 TRP HZ3 H N N 400 TRP HH2 H N N 401 TRP HXT H N N 402 TYR N N N N 403 TYR CA C N S 404 TYR C C N N 405 TYR O O N N 406 TYR CB C N N 407 TYR CG C Y N 408 TYR CD1 C Y N 409 TYR CD2 C Y N 410 TYR CE1 C Y N 411 TYR CE2 C Y N 412 TYR CZ C Y N 413 TYR OH O N N 414 TYR OXT O N N 415 TYR H H N N 416 TYR H2 H N N 417 TYR HA H N N 418 TYR HB2 H N N 419 TYR HB3 H N N 420 TYR HD1 H N N 421 TYR HD2 H N N 422 TYR HE1 H N N 423 TYR HE2 H N N 424 TYR HH H N N 425 TYR HXT H N N 426 VAL N N N N 427 VAL CA C N S 428 VAL C C N N 429 VAL O O N N 430 VAL CB C N N 431 VAL CG1 C N N 432 VAL CG2 C N N 433 VAL OXT O N N 434 VAL H H N N 435 VAL H2 H N N 436 VAL HA H N N 437 VAL HB H N N 438 VAL HG11 H N N 439 VAL HG12 H N N 440 VAL HG13 H N N 441 VAL HG21 H N N 442 VAL HG22 H N N 443 VAL HG23 H N N 444 VAL HXT H N N 445 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DA OP3 P sing N N 70 DA OP3 HOP3 sing N N 71 DA P OP1 doub N N 72 DA P OP2 sing N N 73 DA P "O5'" sing N N 74 DA OP2 HOP2 sing N N 75 DA "O5'" "C5'" sing N N 76 DA "C5'" "C4'" sing N N 77 DA "C5'" "H5'" sing N N 78 DA "C5'" "H5''" sing N N 79 DA "C4'" "O4'" sing N N 80 DA "C4'" "C3'" sing N N 81 DA "C4'" "H4'" sing N N 82 DA "O4'" "C1'" sing N N 83 DA "C3'" "O3'" sing N N 84 DA "C3'" "C2'" sing N N 85 DA "C3'" "H3'" sing N N 86 DA "O3'" "HO3'" sing N N 87 DA "C2'" "C1'" sing N N 88 DA "C2'" "H2'" sing N N 89 DA "C2'" "H2''" sing N N 90 DA "C1'" N9 sing N N 91 DA "C1'" "H1'" sing N N 92 DA N9 C8 sing Y N 93 DA N9 C4 sing Y N 94 DA C8 N7 doub Y N 95 DA C8 H8 sing N N 96 DA N7 C5 sing Y N 97 DA C5 C6 sing Y N 98 DA C5 C4 doub Y N 99 DA C6 N6 sing N N 100 DA C6 N1 doub Y N 101 DA N6 H61 sing N N 102 DA N6 H62 sing N N 103 DA N1 C2 sing Y N 104 DA C2 N3 doub Y N 105 DA C2 H2 sing N N 106 DA N3 C4 sing Y N 107 DT OP3 P sing N N 108 DT OP3 HOP3 sing N N 109 DT P OP1 doub N N 110 DT P OP2 sing N N 111 DT P "O5'" sing N N 112 DT OP2 HOP2 sing N N 113 DT "O5'" "C5'" sing N N 114 DT "C5'" "C4'" sing N N 115 DT "C5'" "H5'" sing N N 116 DT "C5'" "H5''" sing N N 117 DT "C4'" "O4'" sing N N 118 DT "C4'" "C3'" sing N N 119 DT "C4'" "H4'" sing N N 120 DT "O4'" "C1'" sing N N 121 DT "C3'" "O3'" sing N N 122 DT "C3'" "C2'" sing N N 123 DT "C3'" "H3'" sing N N 124 DT "O3'" "HO3'" sing N N 125 DT "C2'" "C1'" sing N N 126 DT "C2'" "H2'" sing N N 127 DT "C2'" "H2''" sing N N 128 DT "C1'" N1 sing N N 129 DT "C1'" "H1'" sing N N 130 DT N1 C2 sing N N 131 DT N1 C6 sing N N 132 DT C2 O2 doub N N 133 DT C2 N3 sing N N 134 DT N3 C4 sing N N 135 DT N3 H3 sing N N 136 DT C4 O4 doub N N 137 DT C4 C5 sing N N 138 DT C5 C7 sing N N 139 DT C5 C6 doub N N 140 DT C7 H71 sing N N 141 DT C7 H72 sing N N 142 DT C7 H73 sing N N 143 DT C6 H6 sing N N 144 GLN N CA sing N N 145 GLN N H sing N N 146 GLN N H2 sing N N 147 GLN CA C sing N N 148 GLN CA CB sing N N 149 GLN CA HA sing N N 150 GLN C O doub N N 151 GLN C OXT sing N N 152 GLN CB CG sing N N 153 GLN CB HB2 sing N N 154 GLN CB HB3 sing N N 155 GLN CG CD sing N N 156 GLN CG HG2 sing N N 157 GLN CG HG3 sing N N 158 GLN CD OE1 doub N N 159 GLN CD NE2 sing N N 160 GLN NE2 HE21 sing N N 161 GLN NE2 HE22 sing N N 162 GLN OXT HXT sing N N 163 GLU N CA sing N N 164 GLU N H sing N N 165 GLU N H2 sing N N 166 GLU CA C sing N N 167 GLU CA CB sing N N 168 GLU CA HA sing N N 169 GLU C O doub N N 170 GLU C OXT sing N N 171 GLU CB CG sing N N 172 GLU CB HB2 sing N N 173 GLU CB HB3 sing N N 174 GLU CG CD sing N N 175 GLU CG HG2 sing N N 176 GLU CG HG3 sing N N 177 GLU CD OE1 doub N N 178 GLU CD OE2 sing N N 179 GLU OE2 HE2 sing N N 180 GLU OXT HXT sing N N 181 GLY N CA sing N N 182 GLY N H sing N N 183 GLY N H2 sing N N 184 GLY CA C sing N N 185 GLY CA HA2 sing N N 186 GLY CA HA3 sing N N 187 GLY C O doub N N 188 GLY C OXT sing N N 189 GLY OXT HXT sing N N 190 HIS N CA sing N N 191 HIS N H sing N N 192 HIS N H2 sing N N 193 HIS CA C sing N N 194 HIS CA CB sing N N 195 HIS CA HA sing N N 196 HIS C O doub N N 197 HIS C OXT sing N N 198 HIS CB CG sing N N 199 HIS CB HB2 sing N N 200 HIS CB HB3 sing N N 201 HIS CG ND1 sing Y N 202 HIS CG CD2 doub Y N 203 HIS ND1 CE1 doub Y N 204 HIS ND1 HD1 sing N N 205 HIS CD2 NE2 sing Y N 206 HIS CD2 HD2 sing N N 207 HIS CE1 NE2 sing Y N 208 HIS CE1 HE1 sing N N 209 HIS NE2 HE2 sing N N 210 HIS OXT HXT sing N N 211 ILE N CA sing N N 212 ILE N H sing N N 213 ILE N H2 sing N N 214 ILE CA C sing N N 215 ILE CA CB sing N N 216 ILE CA HA sing N N 217 ILE C O doub N N 218 ILE C OXT sing N N 219 ILE CB CG1 sing N N 220 ILE CB CG2 sing N N 221 ILE CB HB sing N N 222 ILE CG1 CD1 sing N N 223 ILE CG1 HG12 sing N N 224 ILE CG1 HG13 sing N N 225 ILE CG2 HG21 sing N N 226 ILE CG2 HG22 sing N N 227 ILE CG2 HG23 sing N N 228 ILE CD1 HD11 sing N N 229 ILE CD1 HD12 sing N N 230 ILE CD1 HD13 sing N N 231 ILE OXT HXT sing N N 232 LEU N CA sing N N 233 LEU N H sing N N 234 LEU N H2 sing N N 235 LEU CA C sing N N 236 LEU CA CB sing N N 237 LEU CA HA sing N N 238 LEU C O doub N N 239 LEU C OXT sing N N 240 LEU CB CG sing N N 241 LEU CB HB2 sing N N 242 LEU CB HB3 sing N N 243 LEU CG CD1 sing N N 244 LEU CG CD2 sing N N 245 LEU CG HG sing N N 246 LEU CD1 HD11 sing N N 247 LEU CD1 HD12 sing N N 248 LEU CD1 HD13 sing N N 249 LEU CD2 HD21 sing N N 250 LEU CD2 HD22 sing N N 251 LEU CD2 HD23 sing N N 252 LEU OXT HXT sing N N 253 LYS N CA sing N N 254 LYS N H sing N N 255 LYS N H2 sing N N 256 LYS CA C sing N N 257 LYS CA CB sing N N 258 LYS CA HA sing N N 259 LYS C O doub N N 260 LYS C OXT sing N N 261 LYS CB CG sing N N 262 LYS CB HB2 sing N N 263 LYS CB HB3 sing N N 264 LYS CG CD sing N N 265 LYS CG HG2 sing N N 266 LYS CG HG3 sing N N 267 LYS CD CE sing N N 268 LYS CD HD2 sing N N 269 LYS CD HD3 sing N N 270 LYS CE NZ sing N N 271 LYS CE HE2 sing N N 272 LYS CE HE3 sing N N 273 LYS NZ HZ1 sing N N 274 LYS NZ HZ2 sing N N 275 LYS NZ HZ3 sing N N 276 LYS OXT HXT sing N N 277 MET N CA sing N N 278 MET N H sing N N 279 MET N H2 sing N N 280 MET CA C sing N N 281 MET CA CB sing N N 282 MET CA HA sing N N 283 MET C O doub N N 284 MET C OXT sing N N 285 MET CB CG sing N N 286 MET CB HB2 sing N N 287 MET CB HB3 sing N N 288 MET CG SD sing N N 289 MET CG HG2 sing N N 290 MET CG HG3 sing N N 291 MET SD CE sing N N 292 MET CE HE1 sing N N 293 MET CE HE2 sing N N 294 MET CE HE3 sing N N 295 MET OXT HXT sing N N 296 PHE N CA sing N N 297 PHE N H sing N N 298 PHE N H2 sing N N 299 PHE CA C sing N N 300 PHE CA CB sing N N 301 PHE CA HA sing N N 302 PHE C O doub N N 303 PHE C OXT sing N N 304 PHE CB CG sing N N 305 PHE CB HB2 sing N N 306 PHE CB HB3 sing N N 307 PHE CG CD1 doub Y N 308 PHE CG CD2 sing Y N 309 PHE CD1 CE1 sing Y N 310 PHE CD1 HD1 sing N N 311 PHE CD2 CE2 doub Y N 312 PHE CD2 HD2 sing N N 313 PHE CE1 CZ doub Y N 314 PHE CE1 HE1 sing N N 315 PHE CE2 CZ sing Y N 316 PHE CE2 HE2 sing N N 317 PHE CZ HZ sing N N 318 PHE OXT HXT sing N N 319 PRO N CA sing N N 320 PRO N CD sing N N 321 PRO N H sing N N 322 PRO CA C sing N N 323 PRO CA CB sing N N 324 PRO CA HA sing N N 325 PRO C O doub N N 326 PRO C OXT sing N N 327 PRO CB CG sing N N 328 PRO CB HB2 sing N N 329 PRO CB HB3 sing N N 330 PRO CG CD sing N N 331 PRO CG HG2 sing N N 332 PRO CG HG3 sing N N 333 PRO CD HD2 sing N N 334 PRO CD HD3 sing N N 335 PRO OXT HXT sing N N 336 SER N CA sing N N 337 SER N H sing N N 338 SER N H2 sing N N 339 SER CA C sing N N 340 SER CA CB sing N N 341 SER CA HA sing N N 342 SER C O doub N N 343 SER C OXT sing N N 344 SER CB OG sing N N 345 SER CB HB2 sing N N 346 SER CB HB3 sing N N 347 SER OG HG sing N N 348 SER OXT HXT sing N N 349 THR N CA sing N N 350 THR N H sing N N 351 THR N H2 sing N N 352 THR CA C sing N N 353 THR CA CB sing N N 354 THR CA HA sing N N 355 THR C O doub N N 356 THR C OXT sing N N 357 THR CB OG1 sing N N 358 THR CB CG2 sing N N 359 THR CB HB sing N N 360 THR OG1 HG1 sing N N 361 THR CG2 HG21 sing N N 362 THR CG2 HG22 sing N N 363 THR CG2 HG23 sing N N 364 THR OXT HXT sing N N 365 TRP N CA sing N N 366 TRP N H sing N N 367 TRP N H2 sing N N 368 TRP CA C sing N N 369 TRP CA CB sing N N 370 TRP CA HA sing N N 371 TRP C O doub N N 372 TRP C OXT sing N N 373 TRP CB CG sing N N 374 TRP CB HB2 sing N N 375 TRP CB HB3 sing N N 376 TRP CG CD1 doub Y N 377 TRP CG CD2 sing Y N 378 TRP CD1 NE1 sing Y N 379 TRP CD1 HD1 sing N N 380 TRP CD2 CE2 doub Y N 381 TRP CD2 CE3 sing Y N 382 TRP NE1 CE2 sing Y N 383 TRP NE1 HE1 sing N N 384 TRP CE2 CZ2 sing Y N 385 TRP CE3 CZ3 doub Y N 386 TRP CE3 HE3 sing N N 387 TRP CZ2 CH2 doub Y N 388 TRP CZ2 HZ2 sing N N 389 TRP CZ3 CH2 sing Y N 390 TRP CZ3 HZ3 sing N N 391 TRP CH2 HH2 sing N N 392 TRP OXT HXT sing N N 393 TYR N CA sing N N 394 TYR N H sing N N 395 TYR N H2 sing N N 396 TYR CA C sing N N 397 TYR CA CB sing N N 398 TYR CA HA sing N N 399 TYR C O doub N N 400 TYR C OXT sing N N 401 TYR CB CG sing N N 402 TYR CB HB2 sing N N 403 TYR CB HB3 sing N N 404 TYR CG CD1 doub Y N 405 TYR CG CD2 sing Y N 406 TYR CD1 CE1 sing Y N 407 TYR CD1 HD1 sing N N 408 TYR CD2 CE2 doub Y N 409 TYR CD2 HD2 sing N N 410 TYR CE1 CZ doub Y N 411 TYR CE1 HE1 sing N N 412 TYR CE2 CZ sing Y N 413 TYR CE2 HE2 sing N N 414 TYR CZ OH sing N N 415 TYR OH HH sing N N 416 TYR OXT HXT sing N N 417 VAL N CA sing N N 418 VAL N H sing N N 419 VAL N H2 sing N N 420 VAL CA C sing N N 421 VAL CA CB sing N N 422 VAL CA HA sing N N 423 VAL C O doub N N 424 VAL C OXT sing N N 425 VAL CB CG1 sing N N 426 VAL CB CG2 sing N N 427 VAL CB HB sing N N 428 VAL CG1 HG11 sing N N 429 VAL CG1 HG12 sing N N 430 VAL CG1 HG13 sing N N 431 VAL CG2 HG21 sing N N 432 VAL CG2 HG22 sing N N 433 VAL CG2 HG23 sing N N 434 VAL OXT HXT sing N N 435 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 346882 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Acidianus filamentous virus 6' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.angular_rotation_per_subunit 38.46 _em_helical_entity.axial_rise_per_subunit 5.75 _em_helical_entity.axial_symmetry C1 _em_helical_entity.details ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? _em_image_recording.avg_electron_dose_per_subtomogram ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? ? ? 1 ? ? 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? ? ? 8 'MODEL REFINEMENT' ? ? ? ? ? ? 9 OTHER ? ? ? ? ? ? 10 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 12 CLASSIFICATION ? ? ? 1 ? ? 13 RECONSTRUCTION ? ? ? 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _ndb_struct_conf_na.entry_id 7TXJ _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 B DA 12 1_555 -1.307 0.426 -2.019 30.061 -37.970 -21.799 1 1_DT1:DA12_2 1 1 ? 2 12 ? ? ? 1 A DA 2 1_555 B DT 11 1_555 1.448 0.824 0.083 -16.133 16.024 -30.950 2 1_DA2:DT11_2 1 2 ? 2 11 ? ? ? 1 A DT 3 1_555 B DA 10 1_555 -0.149 1.322 -0.563 25.877 1.442 -51.154 3 1_DT3:DA10_2 1 3 ? 2 10 ? ? ? 1 A DT 7 1_555 B DT 7 1_555 1.438 -1.241 -1.410 0.935 -38.858 -12.231 4 1_DT7:DT7_2 1 7 ? 2 7 ? ? ? 1 A DA 8 1_555 B DA 6 1_555 -1.791 0.938 0.797 -2.133 46.149 19.049 5 1_DA8:DA6_2 1 8 ? 2 6 ? ? 1 1 A DT 9 1_555 B DT 5 1_555 -1.441 -1.159 -1.458 19.469 -30.951 -7.300 6 1_DT9:DT5_2 1 9 ? 2 5 ? ? ? 1 A DA 12 1_555 B DA 2 1_555 1.354 0.894 1.312 -20.486 20.071 5.145 7 1_DA12:DA2_2 1 12 ? 2 2 ? ? 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 1 1_555 B DA 12 1_555 A DA 2 1_555 B DT 11 1_555 0.130 -2.882 4.551 -4.476 22.301 44.421 -5.412 -0.552 2.858 27.470 5.514 49.643 1 11_DT1DA2:DT11DA12_22 1 1 ? 2 12 ? 1 2 ? 2 11 ? 1 A DA 2 1_555 B DT 11 1_555 A DT 3 1_555 B DA 10 1_555 -1.081 -2.077 2.361 5.786 -19.276 24.781 -0.584 2.933 2.893 -37.920 -11.383 31.825 2 11_DA2DT3:DA10DT11_22 1 2 ? 2 11 ? 1 3 ? 2 10 ? 1 A DT 7 1_555 B DT 7 1_555 A DA 8 1_555 B DA 6 1_555 0.897 -2.144 3.155 -30.665 21.874 18.761 -4.402 -3.226 -0.321 37.432 52.476 41.929 3 11_DT7DA8:DA6DT7_22 1 7 ? 2 7 ? 1 8 ? 2 6 ? 1 A DA 8 1_555 B DA 6 1_555 A DT 9 1_555 B DT 5 1_555 -1.619 -1.631 2.813 24.504 4.242 29.115 -2.854 4.538 0.969 7.037 -40.652 38.115 4 11_DA8DT9:DT5DA6_22 1 8 ? 2 6 ? 1 9 ? 2 5 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' R35GM122510 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' K99GM138756 2 # _atom_sites.entry_id 7TXJ _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P S # loop_