HEADER HYDROLASE/HYDROLASE INHIBITOR 15-FEB-22 7TZJ TITLE SARS COV-2 PLPRO IN COMPLEX WITH INHIBITOR 3K COMPND MOL_ID: 1; COMPND 2 MOLECULE: PAPAIN-LIKE PROTEASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NON-STRUCTURAL PROTEIN 3, NSP3, PL2-PRO, PAPAIN-LIKE COMPND 5 PROTEINASE, PL-PRO; COMPND 6 EC: 3.4.19.12; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: INHIBITOR 3K SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_TAXID: 2697049; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SARS COV-2, PAPAIN-LIKE PROTEASE, 3K, COVID19, INHIBITOR, COMPLEX, KEYWDS 2 HYDROLASE/INHIBITOR, HYDROLASE, HYDROLASE-HYDROLASE INHIBITOR KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.J.CALLEJA,T.KLEMM,B.C.LECHTENBERG,N.W.KUCHEL,G.LESSENE,D.KOMANDER REVDAT 3 18-OCT-23 7TZJ 1 REMARK REVDAT 2 11-MAY-22 7TZJ 1 JRNL REVDAT 1 02-MAR-22 7TZJ 0 JRNL AUTH D.J.CALLEJA,N.KUCHEL,B.G.C.LU,R.W.BIRKINSHAW,T.KLEMM, JRNL AUTH 2 M.DOERFLINGER,J.P.COONEY,L.MACKIEWICZ,A.E.AU,Y.Q.YAP, JRNL AUTH 3 T.R.BLACKMORE,K.KATNENI,E.CRIGHTON,J.NEWMAN,K.E.JARMAN, JRNL AUTH 4 M.J.CALL,B.C.LECHTENBERG,P.E.CZABOTAR,M.PELLEGRINI, JRNL AUTH 5 S.A.CHARMAN,K.N.LOWES,J.P.MITCHELL,U.NACHBUR,G.LESSENE, JRNL AUTH 6 D.KOMANDER JRNL TITL INSIGHTS INTO DRUG REPURPOSING, AS WELL AS SPECIFICITY AND JRNL TITL 2 COMPOUND PROPERTIES OF PIPERIDINE-BASED SARS-COV-2 PLPRO JRNL TITL 3 INHIBITORS. JRNL REF FRONT CHEM V. 10 61209 2022 JRNL REFN ESSN 2296-2646 JRNL PMID 35494659 JRNL DOI 10.3389/FCHEM.2022.861209 REMARK 2 REMARK 2 RESOLUTION. 2.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 19521 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 977 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.4900 - 5.0900 1.00 2796 148 0.1922 0.2171 REMARK 3 2 5.0900 - 4.0400 1.00 2680 141 0.1562 0.2331 REMARK 3 3 4.0400 - 3.5300 1.00 2635 138 0.1843 0.2310 REMARK 3 4 3.5300 - 3.2100 1.00 2620 138 0.2082 0.2922 REMARK 3 5 3.2100 - 2.9800 1.00 2631 139 0.2579 0.3221 REMARK 3 6 2.9800 - 2.8000 1.00 2590 137 0.2757 0.3344 REMARK 3 7 2.8000 - 2.6600 0.99 2592 136 0.3009 0.3909 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.458 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.972 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.64 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4976 REMARK 3 ANGLE : 0.691 6747 REMARK 3 CHIRALITY : 0.042 744 REMARK 3 PLANARITY : 0.004 891 REMARK 3 DIHEDRAL : 13.837 1831 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -22.6894 -15.7746 -25.2315 REMARK 3 T TENSOR REMARK 3 T11: 0.3819 T22: 0.3350 REMARK 3 T33: 0.4920 T12: 0.0072 REMARK 3 T13: -0.0192 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 0.2196 L22: 0.2136 REMARK 3 L33: 0.1081 L12: 0.3188 REMARK 3 L13: 0.0211 L23: 0.0532 REMARK 3 S TENSOR REMARK 3 S11: -0.0538 S12: 0.0617 S13: 0.0536 REMARK 3 S21: -0.0919 S22: 0.0237 S23: 0.1018 REMARK 3 S31: 0.0125 S32: 0.0007 S33: 0.0221 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7TZJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1000262771. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-SEP-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.46 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19532 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.660 REMARK 200 RESOLUTION RANGE LOW (A) : 38.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.06169 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.60760 REMARK 200 R SYM FOR SHELL (I) : 0.60760 REMARK 200 FOR SHELL : 0.880 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 6WRH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.117 M ZINC ACETATE 21.6% PEG 8000 REMARK 280 0.1 M BIS-TRIS CHLORIDE (PH 5.46), VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 281K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 36.47550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.31600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.47550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.31600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 GLU A 1 REMARK 465 VAL A 2 REMARK 465 CYS A 189 REMARK 465 LYS A 190 REMARK 465 ILE A 222 REMARK 465 PRO A 223 REMARK 465 CYS A 224 REMARK 465 THR A 225 REMARK 465 CYS A 226 REMARK 465 GLY A 227 REMARK 465 LYS A 228 REMARK 465 GLN A 229 REMARK 465 THR A 313 REMARK 465 ILE A 314 REMARK 465 LYS A 315 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 CYS B 189 REMARK 465 LYS B 190 REMARK 465 THR B 191 REMARK 465 CYS B 192 REMARK 465 GLY B 193 REMARK 465 GLN B 194 REMARK 465 ILE B 222 REMARK 465 PRO B 223 REMARK 465 CYS B 224 REMARK 465 THR B 225 REMARK 465 CYS B 226 REMARK 465 GLY B 227 REMARK 465 LYS B 228 REMARK 465 GLN B 229 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TYR B 95 O HOH B 501 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 61 -169.79 -116.69 REMARK 500 THR A 210 141.34 -177.34 REMARK 500 GLN A 269 -62.16 -90.21 REMARK 500 LYS A 279 -118.30 -91.21 REMARK 500 THR A 301 -26.39 -140.15 REMARK 500 ASP B 37 37.44 38.12 REMARK 500 TYR B 95 77.39 -117.26 REMARK 500 SER B 103 -167.72 -129.38 REMARK 500 LYS B 279 -140.52 -119.21 REMARK 500 THR B 301 -30.58 -131.27 REMARK 500 ASN B 308 -60.02 -149.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 15 OD1 REMARK 620 2 HIS B 17 NE2 165.0 REMARK 620 3 GLU B 67 OE2 165.3 3.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 405 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 17 NE2 REMARK 620 2 GLU A 67 OE2 131.5 REMARK 620 3 HOH A 511 O 95.6 120.7 REMARK 620 4 ASN B 15 OD1 128.4 45.0 132.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 73 NE2 REMARK 620 2 HOH A 517 O 151.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 405 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 47 NE2 REMARK 620 2 HOH B 509 O 89.5 REMARK 620 3 HOH B 511 O 110.8 97.0 REMARK 620 N 1 2 DBREF 7TZJ A 1 315 UNP P0DTC1 R1A_SARS2 1564 1878 DBREF 7TZJ B 1 315 UNP P0DTC1 R1A_SARS2 1564 1878 SEQADV 7TZJ SER A -2 UNP P0DTC1 EXPRESSION TAG SEQADV 7TZJ ASN A -1 UNP P0DTC1 EXPRESSION TAG SEQADV 7TZJ ALA A 0 UNP P0DTC1 EXPRESSION TAG SEQADV 7TZJ SER A 111 UNP P0DTC1 CYS 1674 ENGINEERED MUTATION SEQADV 7TZJ SER B -2 UNP P0DTC1 EXPRESSION TAG SEQADV 7TZJ ASN B -1 UNP P0DTC1 EXPRESSION TAG SEQADV 7TZJ ALA B 0 UNP P0DTC1 EXPRESSION TAG SEQADV 7TZJ SER B 111 UNP P0DTC1 CYS 1674 ENGINEERED MUTATION SEQRES 1 A 318 SER ASN ALA GLU VAL ARG THR ILE LYS VAL PHE THR THR SEQRES 2 A 318 VAL ASP ASN ILE ASN LEU HIS THR GLN VAL VAL ASP MET SEQRES 3 A 318 SER MET THR TYR GLY GLN GLN PHE GLY PRO THR TYR LEU SEQRES 4 A 318 ASP GLY ALA ASP VAL THR LYS ILE LYS PRO HIS ASN SER SEQRES 5 A 318 HIS GLU GLY LYS THR PHE TYR VAL LEU PRO ASN ASP ASP SEQRES 6 A 318 THR LEU ARG VAL GLU ALA PHE GLU TYR TYR HIS THR THR SEQRES 7 A 318 ASP PRO SER PHE LEU GLY ARG TYR MET SER ALA LEU ASN SEQRES 8 A 318 HIS THR LYS LYS TRP LYS TYR PRO GLN VAL ASN GLY LEU SEQRES 9 A 318 THR SER ILE LYS TRP ALA ASP ASN ASN SER TYR LEU ALA SEQRES 10 A 318 THR ALA LEU LEU THR LEU GLN GLN ILE GLU LEU LYS PHE SEQRES 11 A 318 ASN PRO PRO ALA LEU GLN ASP ALA TYR TYR ARG ALA ARG SEQRES 12 A 318 ALA GLY GLU ALA ALA ASN PHE CYS ALA LEU ILE LEU ALA SEQRES 13 A 318 TYR CYS ASN LYS THR VAL GLY GLU LEU GLY ASP VAL ARG SEQRES 14 A 318 GLU THR MET SER TYR LEU PHE GLN HIS ALA ASN LEU ASP SEQRES 15 A 318 SER CYS LYS ARG VAL LEU ASN VAL VAL CYS LYS THR CYS SEQRES 16 A 318 GLY GLN GLN GLN THR THR LEU LYS GLY VAL GLU ALA VAL SEQRES 17 A 318 MET TYR MET GLY THR LEU SER TYR GLU GLN PHE LYS LYS SEQRES 18 A 318 GLY VAL GLN ILE PRO CYS THR CYS GLY LYS GLN ALA THR SEQRES 19 A 318 LYS TYR LEU VAL GLN GLN GLU SER PRO PHE VAL MET MET SEQRES 20 A 318 SER ALA PRO PRO ALA GLN TYR GLU LEU LYS HIS GLY THR SEQRES 21 A 318 PHE THR CYS ALA SER GLU TYR THR GLY ASN TYR GLN CYS SEQRES 22 A 318 GLY HIS TYR LYS HIS ILE THR SER LYS GLU THR LEU TYR SEQRES 23 A 318 CYS ILE ASP GLY ALA LEU LEU THR LYS SER SER GLU TYR SEQRES 24 A 318 LYS GLY PRO ILE THR ASP VAL PHE TYR LYS GLU ASN SER SEQRES 25 A 318 TYR THR THR THR ILE LYS SEQRES 1 B 318 SER ASN ALA GLU VAL ARG THR ILE LYS VAL PHE THR THR SEQRES 2 B 318 VAL ASP ASN ILE ASN LEU HIS THR GLN VAL VAL ASP MET SEQRES 3 B 318 SER MET THR TYR GLY GLN GLN PHE GLY PRO THR TYR LEU SEQRES 4 B 318 ASP GLY ALA ASP VAL THR LYS ILE LYS PRO HIS ASN SER SEQRES 5 B 318 HIS GLU GLY LYS THR PHE TYR VAL LEU PRO ASN ASP ASP SEQRES 6 B 318 THR LEU ARG VAL GLU ALA PHE GLU TYR TYR HIS THR THR SEQRES 7 B 318 ASP PRO SER PHE LEU GLY ARG TYR MET SER ALA LEU ASN SEQRES 8 B 318 HIS THR LYS LYS TRP LYS TYR PRO GLN VAL ASN GLY LEU SEQRES 9 B 318 THR SER ILE LYS TRP ALA ASP ASN ASN SER TYR LEU ALA SEQRES 10 B 318 THR ALA LEU LEU THR LEU GLN GLN ILE GLU LEU LYS PHE SEQRES 11 B 318 ASN PRO PRO ALA LEU GLN ASP ALA TYR TYR ARG ALA ARG SEQRES 12 B 318 ALA GLY GLU ALA ALA ASN PHE CYS ALA LEU ILE LEU ALA SEQRES 13 B 318 TYR CYS ASN LYS THR VAL GLY GLU LEU GLY ASP VAL ARG SEQRES 14 B 318 GLU THR MET SER TYR LEU PHE GLN HIS ALA ASN LEU ASP SEQRES 15 B 318 SER CYS LYS ARG VAL LEU ASN VAL VAL CYS LYS THR CYS SEQRES 16 B 318 GLY GLN GLN GLN THR THR LEU LYS GLY VAL GLU ALA VAL SEQRES 17 B 318 MET TYR MET GLY THR LEU SER TYR GLU GLN PHE LYS LYS SEQRES 18 B 318 GLY VAL GLN ILE PRO CYS THR CYS GLY LYS GLN ALA THR SEQRES 19 B 318 LYS TYR LEU VAL GLN GLN GLU SER PRO PHE VAL MET MET SEQRES 20 B 318 SER ALA PRO PRO ALA GLN TYR GLU LEU LYS HIS GLY THR SEQRES 21 B 318 PHE THR CYS ALA SER GLU TYR THR GLY ASN TYR GLN CYS SEQRES 22 B 318 GLY HIS TYR LYS HIS ILE THR SER LYS GLU THR LEU TYR SEQRES 23 B 318 CYS ILE ASP GLY ALA LEU LEU THR LYS SER SER GLU TYR SEQRES 24 B 318 LYS GLY PRO ILE THR ASP VAL PHE TYR LYS GLU ASN SER SEQRES 25 B 318 TYR THR THR THR ILE LYS HET S88 A 401 56 HET ZN A 402 1 HET ZN A 403 1 HET ZN A 404 1 HET ZN A 405 1 HET DMS A 406 10 HET S88 B 401 56 HET ZN B 402 1 HET ZN B 403 1 HET ZN B 404 1 HET ZN B 405 1 HET ZN B 406 1 HET DMS B 407 10 HETNAM S88 N-[(3-FLUOROPHENYL)METHYL]-1-[(1R)-1-NAPHTHALEN-1- HETNAM 2 S88 YLETHYL]PIPERIDINE-4-CARBOXAMIDE HETNAM ZN ZINC ION HETNAM DMS DIMETHYL SULFOXIDE FORMUL 3 S88 2(C25 H27 F N2 O) FORMUL 4 ZN 9(ZN 2+) FORMUL 8 DMS 2(C2 H6 O S) FORMUL 16 HOH *30(H2 O) HELIX 1 AA1 THR A 26 GLY A 32 1 7 HELIX 2 AA2 HIS A 47 GLU A 51 5 5 HELIX 3 AA3 ASP A 61 HIS A 73 1 13 HELIX 4 AA4 SER A 78 LYS A 91 1 14 HELIX 5 AA5 ASN A 110 GLN A 122 1 13 HELIX 6 AA6 PRO A 129 ALA A 141 1 13 HELIX 7 AA7 ALA A 144 CYS A 155 1 12 HELIX 8 AA8 ASP A 164 HIS A 175 1 12 HELIX 9 AA9 LYS A 200 ALA A 204 5 5 HELIX 10 AB1 SER A 212 GLY A 219 1 8 HELIX 11 AB2 THR B 26 GLY B 32 1 7 HELIX 12 AB3 HIS B 47 GLU B 51 5 5 HELIX 13 AB4 ASP B 61 HIS B 73 1 13 HELIX 14 AB5 SER B 78 LYS B 91 1 14 HELIX 15 AB6 ASN B 110 GLN B 122 1 13 HELIX 16 AB7 PRO B 129 ALA B 141 1 13 HELIX 17 AB8 ALA B 144 CYS B 155 1 12 HELIX 18 AB9 ASP B 164 HIS B 175 1 12 HELIX 19 AC1 LYS B 200 ALA B 204 5 5 HELIX 20 AC2 SER B 212 GLY B 219 1 8 SHEET 1 AA1 3 HIS A 17 ASP A 22 0 SHEET 2 AA1 3 THR A 4 THR A 10 -1 N ILE A 5 O VAL A 21 SHEET 3 AA1 3 THR A 54 TYR A 56 1 O PHE A 55 N PHE A 8 SHEET 1 AA2 2 TYR A 35 LEU A 36 0 SHEET 2 AA2 2 ALA A 39 ASP A 40 -1 O ALA A 39 N LEU A 36 SHEET 1 AA3 2 GLN A 97 VAL A 98 0 SHEET 2 AA3 2 LEU A 101 THR A 102 -1 O LEU A 101 N VAL A 98 SHEET 1 AA4 4 THR A 197 LEU A 199 0 SHEET 2 AA4 4 LYS A 182 VAL A 188 -1 N ARG A 183 O LEU A 199 SHEET 3 AA4 4 THR A 231 GLU A 238 -1 O THR A 231 N VAL A 188 SHEET 4 AA4 4 SER A 309 THR A 311 -1 O TYR A 310 N GLN A 237 SHEET 1 AA5 7 MET A 206 MET A 208 0 SHEET 2 AA5 7 VAL A 242 LEU A 253 1 O SER A 245 N TYR A 207 SHEET 3 AA5 7 TYR A 296 TYR A 305 -1 O VAL A 303 N MET A 244 SHEET 4 AA5 7 CYS A 260 GLY A 266 -1 N CYS A 260 O PHE A 304 SHEET 5 AA5 7 GLY A 271 SER A 278 -1 O LYS A 274 N GLU A 263 SHEET 6 AA5 7 LEU A 282 ASP A 286 -1 O TYR A 283 N THR A 277 SHEET 7 AA5 7 LEU A 289 SER A 293 -1 O THR A 291 N CYS A 284 SHEET 1 AA6 5 HIS B 17 ASP B 22 0 SHEET 2 AA6 5 THR B 4 THR B 10 -1 N VAL B 7 O GLN B 19 SHEET 3 AA6 5 THR B 54 VAL B 57 1 O PHE B 55 N PHE B 8 SHEET 4 AA6 5 THR B 34 LEU B 36 -1 N TYR B 35 O TYR B 56 SHEET 5 AA6 5 ALA B 39 ASP B 40 -1 O ALA B 39 N LEU B 36 SHEET 1 AA7 2 GLN B 97 VAL B 98 0 SHEET 2 AA7 2 LEU B 101 THR B 102 -1 O LEU B 101 N VAL B 98 SHEET 1 AA8 4 THR B 197 LEU B 199 0 SHEET 2 AA8 4 LYS B 182 VAL B 187 -1 N ARG B 183 O LEU B 199 SHEET 3 AA8 4 LYS B 232 GLU B 238 -1 O GLN B 236 N VAL B 184 SHEET 4 AA8 4 SER B 309 THR B 311 -1 O TYR B 310 N GLN B 237 SHEET 1 AA9 7 MET B 206 MET B 208 0 SHEET 2 AA9 7 PHE B 241 LEU B 253 1 O MET B 243 N TYR B 207 SHEET 3 AA9 7 TYR B 296 LYS B 306 -1 O ILE B 300 N ALA B 249 SHEET 4 AA9 7 CYS B 260 GLY B 266 -1 N CYS B 260 O PHE B 304 SHEET 5 AA9 7 GLY B 271 SER B 278 -1 O LYS B 274 N GLU B 263 SHEET 6 AA9 7 LEU B 282 ASP B 286 -1 O ILE B 285 N HIS B 275 SHEET 7 AA9 7 LEU B 289 SER B 293 -1 O SER B 293 N LEU B 282 LINK OD1 ASN A 15 ZN ZN B 404 1555 3455 1.96 LINK NE2 HIS A 17 ZN ZN A 405 1555 1555 2.07 LINK NE2 HIS A 47 ZN ZN A 402 1555 1555 2.33 LINK OE2 GLU A 67 ZN ZN A 405 1555 1555 1.99 LINK NE2 HIS A 73 ZN ZN A 404 1555 1555 2.15 LINK ND1 HIS A 89 ZN ZN A 403 1555 1555 2.33 LINK ZN ZN A 404 O HOH A 517 1555 1555 2.44 LINK ZN ZN A 405 O HOH A 511 1555 1555 2.61 LINK ZN ZN A 405 OD1 ASN B 15 3445 1555 1.83 LINK NE2 HIS B 17 ZN ZN B 404 1555 1555 2.01 LINK NE2 HIS B 47 ZN ZN B 405 1555 1555 2.20 LINK OE2 GLU B 67 ZN ZN B 404 1555 1555 1.94 LINK NE2 HIS B 73 ZN ZN B 406 1555 1555 2.29 LINK ND1 HIS B 89 ZN ZN B 402 1555 1555 2.22 LINK NE2 HIS B 255 ZN ZN B 403 1555 1555 2.29 LINK ZN ZN B 405 O HOH B 509 1555 1555 2.45 LINK ZN ZN B 405 O HOH B 511 1555 1555 2.22 CRYST1 72.951 90.632 99.766 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013708 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011034 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010023 0.00000