HEADER VIRAL PROTEIN/IMMUNE SYSTEM 17-FEB-22 7U0A TITLE CRYSTAL STRUCTURE OF C77G12 FAB IN COMPLEX WITH SARS-COV-2 S FUSION TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SARS-COV-2 S FUSION PEPTIDE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HEAVY CHAIN FAB C77G12; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: LIGHT CHAIN FAB C77G12; COMPND 11 CHAIN: L; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 4 2; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS SARS-COV-2 SPIKE, COVID-19, FUSION PEPTIDE, FAB, VIRAL PROTEIN, VIRAL KEYWDS 2 PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.A.TORTORICI,D.VEESLER REVDAT 4 18-OCT-23 7U0A 1 REMARK REVDAT 3 24-AUG-22 7U0A 1 JRNL REVDAT 2 10-AUG-22 7U0A 1 SOURCE REMARK DBREF HELIX REVDAT 2 2 1 ATOM REVDAT 1 03-AUG-22 7U0A 0 JRNL AUTH J.S.LOW,J.JERAK,M.A.TORTORICI,M.MCCALLUM,D.PINTO,A.CASSOTTA, JRNL AUTH 2 M.FOGLIERINI,F.MELE,R.ABDELNABI,B.WEYNAND,J.NOACK, JRNL AUTH 3 M.MONTIEL-RUIZ,S.BIANCHI,F.BENIGNI,N.SPRUGASCI,A.JOSHI, JRNL AUTH 4 J.E.BOWEN,C.STEWART,M.REXHEPAJ,A.C.WALLS,D.JARROSSAY, JRNL AUTH 5 D.MORONE,P.PAPARODITIS,C.GARZONI,P.FERRARI,A.CESCHI,J.NEYTS, JRNL AUTH 6 L.A.PURCELL,G.SNELL,D.CORTI,A.LANZAVECCHIA,D.VEESLER, JRNL AUTH 7 F.SALLUSTO JRNL TITL ACE2-BINDING EXPOSES THE SARS-COV-2 FUSION PEPTIDE TO JRNL TITL 2 BROADLY NEUTRALIZING CORONAVIRUS ANTIBODIES. JRNL REF SCIENCE V. 377 735 2022 JRNL REFN ESSN 1095-9203 JRNL PMID 35857703 JRNL DOI 10.1126/SCIENCE.ABQ2679 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 49412 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 2526 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.1500 - 4.4500 1.00 2694 132 0.1450 0.1419 REMARK 3 2 4.4500 - 3.5400 0.99 2624 132 0.1243 0.1643 REMARK 3 3 3.5400 - 3.0900 1.00 2629 141 0.1368 0.1539 REMARK 3 4 3.0900 - 2.8100 1.00 2611 132 0.1516 0.1885 REMARK 3 5 2.8100 - 2.6100 1.00 2624 133 0.1614 0.1939 REMARK 3 6 2.6100 - 2.4500 1.00 2594 151 0.1637 0.2150 REMARK 3 7 2.4500 - 2.3300 1.00 2618 128 0.1591 0.2136 REMARK 3 8 2.3300 - 2.2300 1.00 2591 145 0.1543 0.1722 REMARK 3 9 2.2300 - 2.1400 1.00 2573 160 0.1459 0.1858 REMARK 3 10 2.1400 - 2.0700 1.00 2577 163 0.1484 0.1825 REMARK 3 11 2.0700 - 2.0000 1.00 2607 152 0.1554 0.2043 REMARK 3 12 2.0000 - 1.9500 1.00 2579 148 0.1680 0.2338 REMARK 3 13 1.9500 - 1.8900 1.00 2594 145 0.1969 0.2578 REMARK 3 14 1.8900 - 1.8500 1.00 2580 144 0.1858 0.2134 REMARK 3 15 1.8500 - 1.8100 1.00 2622 104 0.1844 0.2528 REMARK 3 16 1.8100 - 1.7700 1.00 2606 129 0.1976 0.2465 REMARK 3 17 1.7700 - 1.7300 1.00 2581 138 0.2323 0.2886 REMARK 3 18 1.7300 - 1.7000 1.00 2582 149 0.3023 0.3508 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 814 THROUGH 826 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.0587 57.8015 -40.2074 REMARK 3 T TENSOR REMARK 3 T11: 0.2702 T22: 0.2733 REMARK 3 T33: 0.2411 T12: -0.0213 REMARK 3 T13: 0.0467 T23: 0.1213 REMARK 3 L TENSOR REMARK 3 L11: 7.5190 L22: 7.4039 REMARK 3 L33: 2.2356 L12: -0.1261 REMARK 3 L13: 3.2993 L23: 2.0518 REMARK 3 S TENSOR REMARK 3 S11: -0.0655 S12: 0.6456 S13: 0.5532 REMARK 3 S21: -0.7040 S22: 0.2779 S23: 0.0693 REMARK 3 S31: -0.5497 S32: -0.0370 S33: -0.1069 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.7547 42.7947 -35.9299 REMARK 3 T TENSOR REMARK 3 T11: 0.1526 T22: 0.1946 REMARK 3 T33: 0.1600 T12: -0.0330 REMARK 3 T13: 0.0097 T23: 0.0148 REMARK 3 L TENSOR REMARK 3 L11: 1.3374 L22: 1.2365 REMARK 3 L33: 1.0168 L12: -0.3927 REMARK 3 L13: 0.1383 L23: -0.3336 REMARK 3 S TENSOR REMARK 3 S11: -0.0144 S12: 0.0810 S13: -0.0127 REMARK 3 S21: -0.0973 S22: 0.0252 S23: 0.0196 REMARK 3 S31: 0.0327 S32: -0.0527 S33: -0.0260 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 122 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.4985 11.0496 -16.1910 REMARK 3 T TENSOR REMARK 3 T11: 0.1654 T22: 0.1330 REMARK 3 T33: 0.1622 T12: -0.0030 REMARK 3 T13: -0.0143 T23: -0.0259 REMARK 3 L TENSOR REMARK 3 L11: 3.4011 L22: 3.3976 REMARK 3 L33: 2.4814 L12: 1.6794 REMARK 3 L13: -1.6274 L23: -1.7918 REMARK 3 S TENSOR REMARK 3 S11: 0.0317 S12: -0.0282 S13: -0.2259 REMARK 3 S21: 0.1070 S22: 0.0120 S23: 0.0231 REMARK 3 S31: 0.1639 S32: -0.0362 S33: -0.0420 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 1 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.7061 43.7794 -19.0749 REMARK 3 T TENSOR REMARK 3 T11: 0.1564 T22: 0.1686 REMARK 3 T33: 0.1773 T12: -0.0164 REMARK 3 T13: 0.0185 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 0.6808 L22: 1.3576 REMARK 3 L33: 1.1530 L12: 0.0047 REMARK 3 L13: -0.3828 L23: -0.8898 REMARK 3 S TENSOR REMARK 3 S11: 0.0288 S12: -0.0113 S13: 0.0574 REMARK 3 S21: 0.1108 S22: -0.0027 S23: 0.0283 REMARK 3 S31: -0.1086 S32: 0.0218 S33: -0.0327 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 116 THROUGH 213) REMARK 3 ORIGIN FOR THE GROUP (A): -2.7850 19.1659 -3.4124 REMARK 3 T TENSOR REMARK 3 T11: 0.2104 T22: 0.1849 REMARK 3 T33: 0.1391 T12: -0.0119 REMARK 3 T13: 0.0097 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 5.0815 L22: 1.9316 REMARK 3 L33: 1.1208 L12: -1.7853 REMARK 3 L13: 0.1733 L23: -0.4215 REMARK 3 S TENSOR REMARK 3 S11: -0.1281 S12: -0.3911 S13: 0.0373 REMARK 3 S21: 0.2683 S22: 0.1360 S23: -0.1005 REMARK 3 S31: -0.0225 S32: 0.1439 S33: -0.0074 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7U0A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1000263267. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.988 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49412 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 49.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 7R6W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM CHLORIDE 20 % (W/V) PEG REMARK 280 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.02800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 825 REMARK 465 CYS L 214 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 813 OG REMARK 470 GLU H 1 CG CD OE1 OE2 REMARK 470 LYS L 126 CG CD CE NZ REMARK 470 LYS L 145 CG CD CE NZ REMARK 470 ASN L 152 CG OD1 ND2 REMARK 470 LYS L 169 CG CD CE NZ REMARK 470 LYS L 190 CG CD CE NZ REMARK 470 SER L 203 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH H 470 O HOH H 608 1.70 REMARK 500 O HOH L 337 O HOH L 520 1.86 REMARK 500 O HOH L 345 O HOH L 532 1.95 REMARK 500 O HOH H 579 O HOH L 520 2.00 REMARK 500 O HOH H 608 O HOH L 520 2.04 REMARK 500 O HOH L 344 O HOH L 540 2.06 REMARK 500 O HOH L 518 O HOH L 523 2.06 REMARK 500 O HOH H 466 O HOH L 532 2.07 REMARK 500 O HOH H 464 O HOH H 642 2.08 REMARK 500 O HOH L 450 O HOH L 499 2.09 REMARK 500 O HOH H 587 O HOH H 597 2.09 REMARK 500 NE2 GLN H 201 O HOH H 401 2.09 REMARK 500 O HOH H 626 O HOH H 640 2.14 REMARK 500 O HOH H 436 O HOH H 643 2.14 REMARK 500 O HOH H 486 O HOH H 643 2.15 REMARK 500 O HOH H 638 O HOH L 384 2.17 REMARK 500 O HOH L 363 O HOH L 487 2.18 REMARK 500 O HOH L 508 O HOH L 545 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH H 627 O HOH L 314 1655 1.88 REMARK 500 O HOH H 434 O HOH H 620 2544 2.04 REMARK 500 O HOH H 590 O HOH L 305 1545 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS H 205 CA - CB - SG ANGL. DEV. = 7.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP H 153 52.15 71.23 REMARK 500 ALA L 30 -126.14 54.48 REMARK 500 ALA L 51 -39.81 69.99 REMARK 500 ALA L 84 -179.85 -171.81 REMARK 500 REMARK 500 REMARK: NULL DBREF 7U0A A 812 825 PDB 7U0A 7U0A 812 825 DBREF 7U0A H 1 225 PDB 7U0A 7U0A 1 225 DBREF 7U0A L 1 214 PDB 7U0A 7U0A 1 214 SEQRES 1 A 14 PRO SER LYS ARG SER PHE ILE GLU ASP LEU LEU PHE ASN SEQRES 2 A 14 LYS SEQRES 1 H 225 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY VAL VAL GLN SEQRES 2 H 225 PRO GLY ARG SER LEU ARG ILE SER CYS ALA VAL SER GLY SEQRES 3 H 225 PHE THR PHE GLY SER TYR ALA MET HIS TRP VAL ARG GLN SEQRES 4 H 225 ALA PRO GLY LYS GLY LEU GLU TRP VAL GLY VAL MET SER SEQRES 5 H 225 SER ASP GLY HIS ASN GLU TYR TYR ALA ASP SER VAL LYS SEQRES 6 H 225 GLY ARG PHE THR ILE SER ARG ASP ASN SER ARG ASN LYS SEQRES 7 H 225 LEU TYR LEU GLU MET ASN ASN LEU ARG VAL ASP ASP THR SEQRES 8 H 225 ALA VAL PHE TYR CYS ALA ARG GLY SER ASP TYR VAL ASP SEQRES 9 H 225 ASP SER PRO PRO LEU HIS TYR TRP GLY GLN GLY THR LEU SEQRES 10 H 225 VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL SEQRES 11 H 225 PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY SEQRES 12 H 225 THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO SEQRES 13 H 225 GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SEQRES 14 H 225 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER SEQRES 15 H 225 GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SEQRES 16 H 225 SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN SEQRES 17 H 225 HIS LYS PRO SER ASN THR LYS VAL ASP LYS ARG VAL GLU SEQRES 18 H 225 PRO LYS SER CYS SEQRES 1 L 214 ASP ILE GLN LEU THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 214 SER ILE GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 L 214 GLN ASP ILE ALA ASN LYS LEU ALA TRP PHE GLN GLN ALA SEQRES 4 L 214 PRO GLY LYS ALA PRO LYS SER LEU ILE TYR ALA ALA SER SEQRES 5 L 214 ARG LEU GLN SER GLY VAL PRO SER GLN PHE SER GLY SER SEQRES 6 L 214 GLY SER GLY THR ASP PHE THR LEU THR ILE GLU SER LEU SEQRES 7 L 214 GLN ALA GLY ASP PHE ALA THR TYR PHE CYS GLN GLN TYR SEQRES 8 L 214 ASP SER PHE PRO PHE THR PHE GLY PRO GLY THR LYS VAL SEQRES 9 L 214 ASP VAL LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 L 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 L 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 L 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 L 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 L 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 L 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 L 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 L 214 PHE ASN ARG GLY GLU CYS HET CL H 301 1 HETNAM CL CHLORIDE ION FORMUL 4 CL CL 1- FORMUL 5 HOH *546(H2 O) HELIX 1 AA1 SER A 816 ASN A 824 1 9 HELIX 2 AA2 THR H 28 TYR H 32 5 5 HELIX 3 AA3 ARG H 87 THR H 91 5 5 HELIX 4 AA4 SER H 136 LYS H 138 5 3 HELIX 5 AA5 SER H 165 ALA H 167 5 3 HELIX 6 AA6 SER H 196 LEU H 198 5 3 HELIX 7 AA7 LYS H 210 ASN H 213 5 4 HELIX 8 AA8 GLN L 79 PHE L 83 5 5 HELIX 9 AA9 SER L 121 SER L 127 1 7 HELIX 10 AB1 LYS L 183 GLU L 187 1 5 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O ALA H 23 N VAL H 5 SHEET 3 AA1 4 LYS H 78 MET H 83 -1 O MET H 83 N LEU H 18 SHEET 4 AA1 4 PHE H 68 ASP H 73 -1 N THR H 69 O GLU H 82 SHEET 1 AA2 6 GLY H 10 VAL H 12 0 SHEET 2 AA2 6 THR H 116 VAL H 120 1 O THR H 119 N VAL H 12 SHEET 3 AA2 6 ALA H 92 ARG H 98 -1 N PHE H 94 O THR H 116 SHEET 4 AA2 6 MET H 34 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 AA2 6 GLU H 46 MET H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AA2 6 GLU H 58 TYR H 60 -1 O TYR H 59 N VAL H 50 SHEET 1 AA3 4 SER H 129 LEU H 133 0 SHEET 2 AA3 4 THR H 144 TYR H 154 -1 O GLY H 148 N LEU H 133 SHEET 3 AA3 4 TYR H 185 PRO H 194 -1 O LEU H 187 N VAL H 151 SHEET 4 AA3 4 VAL H 172 THR H 174 -1 N HIS H 173 O VAL H 190 SHEET 1 AA4 4 THR H 140 SER H 141 0 SHEET 2 AA4 4 THR H 144 TYR H 154 -1 O THR H 144 N SER H 141 SHEET 3 AA4 4 TYR H 185 PRO H 194 -1 O LEU H 187 N VAL H 151 SHEET 4 AA4 4 VAL H 178 LEU H 179 -1 N VAL H 178 O SER H 186 SHEET 1 AA5 3 THR H 160 TRP H 163 0 SHEET 2 AA5 3 ILE H 204 HIS H 209 -1 O ASN H 206 N SER H 162 SHEET 3 AA5 3 THR H 214 ARG H 219 -1 O VAL H 216 N VAL H 207 SHEET 1 AA6 4 LEU L 4 SER L 7 0 SHEET 2 AA6 4 VAL L 19 ALA L 25 -1 O THR L 22 N SER L 7 SHEET 3 AA6 4 ASP L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 AA6 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA7 6 SER L 10 ALA L 13 0 SHEET 2 AA7 6 THR L 102 VAL L 106 1 O LYS L 103 N LEU L 11 SHEET 3 AA7 6 THR L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA7 6 LEU L 33 GLN L 38 -1 N ALA L 34 O GLN L 89 SHEET 5 AA7 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA7 6 ARG L 53 LEU L 54 -1 O ARG L 53 N TYR L 49 SHEET 1 AA8 4 SER L 10 ALA L 13 0 SHEET 2 AA8 4 THR L 102 VAL L 106 1 O LYS L 103 N LEU L 11 SHEET 3 AA8 4 THR L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA8 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AA9 4 SER L 114 PHE L 118 0 SHEET 2 AA9 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 AA9 4 TYR L 173 SER L 182 -1 O LEU L 179 N VAL L 132 SHEET 4 AA9 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 AB1 4 ALA L 153 LEU L 154 0 SHEET 2 AB1 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AB1 4 VAL L 191 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 4 AB1 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.04 SSBOND 2 CYS H 149 CYS H 205 1555 1555 2.05 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.12 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.04 CISPEP 1 PHE H 155 PRO H 156 0 -7.48 CISPEP 2 GLU H 157 PRO H 158 0 0.37 CISPEP 3 SER L 7 PRO L 8 0 -7.47 CISPEP 4 PHE L 94 PRO L 95 0 -4.22 CISPEP 5 TYR L 140 PRO L 141 0 5.10 CRYST1 45.227 64.056 78.813 90.00 93.33 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022111 0.000000 0.001288 0.00000 SCALE2 0.000000 0.015611 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012710 0.00000