data_7U17 # _entry.id 7U17 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.358 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7U17 pdb_00007u17 10.2210/pdb7u17/pdb WWPDB D_1000263352 ? ? EMDB EMD-26278 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details . _pdbx_database_related.db_id EMD-26278 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7U17 _pdbx_database_status.recvd_initial_deposition_date 2022-02-19 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Fitzpatrick, A.W.P.' 1 ? 'Stowell, M.H.B.' 2 ? 'Chang, A.' 3 ? 'Xiang, X.' 4 ? 'Wang, J.' 5 ? 'Lee, C.' 6 ? 'Arakhamia, T.' 7 ? 'Simjanoska, M.' 8 ? 'Wang, C.' 9 ? 'Carlomagno, Y.' 10 ? 'Zhang, G.' 11 ? 'Dhingra, S.' 12 ? 'Thierry, M.' 13 ? 'Perneel, J.' 14 ? 'Heeman, B.' 15 ? 'Forgrave, L.M.' 16 ? 'DeTure, M.' 17 ? 'DeMarco, M.L.' 18 ? 'Cook, C.N.' 19 ? 'Rademakers, R.' 20 ? 'Dickson, D.' 21 ? 'Petrucelli, L.' 22 ? 'Mackenzie, I.R.A.' 23 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Cell _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1097-4172 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 185 _citation.language ? _citation.page_first 1346 _citation.page_last 1355.e15 _citation.title 'Homotypic fibrillization of TMEM106B across diverse neurodegenerative diseases.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.cell.2022.02.026 _citation.pdbx_database_id_PubMed 35247328 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chang, A.' 1 ? primary 'Xiang, X.' 2 ? primary 'Wang, J.' 3 ? primary 'Lee, C.' 4 ? primary 'Arakhamia, T.' 5 ? primary 'Simjanoska, M.' 6 ? primary 'Wang, C.' 7 ? primary 'Carlomagno, Y.' 8 ? primary 'Zhang, G.' 9 ? primary 'Dhingra, S.' 10 ? primary 'Thierry, M.' 11 ? primary 'Perneel, J.' 12 ? primary 'Heeman, B.' 13 ? primary 'Forgrave, L.M.' 14 ? primary 'DeTure, M.' 15 ? primary 'DeMarco, M.L.' 16 ? primary 'Cook, C.N.' 17 ? primary 'Rademakers, R.' 18 ? primary 'Dickson, D.W.' 19 ? primary 'Petrucelli, L.' 20 ? primary 'Stowell, M.H.B.' 21 ? primary 'Mackenzie, I.R.A.' 22 ? primary 'Fitzpatrick, A.W.P.' 23 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7U17 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7U17 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Transmembrane protein 106B' 15488.652 3 ? T185S ? ? 2 non-polymer syn 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 12 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SIDVKYIGVKSAYVSYDVQKRTIYLNITNTLNITNNNYYSVEVENITAQVQFSKTVIGKARLNNISIIGPLDMKQIDYTV PTVIAEEMSYMYDFCTLISIKVHNIVLMMQVTVTTTYFGHSEQISQERYQYVDCG ; _entity_poly.pdbx_seq_one_letter_code_can ;SIDVKYIGVKSAYVSYDVQKRTIYLNITNTLNITNNNYYSVEVENITAQVQFSKTVIGKARLNNISIIGPLDMKQIDYTV PTVIAEEMSYMYDFCTLISIKVHNIVLMMQVTVTTTYFGHSEQISQERYQYVDCG ; _entity_poly.pdbx_strand_id B,A,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ILE n 1 3 ASP n 1 4 VAL n 1 5 LYS n 1 6 TYR n 1 7 ILE n 1 8 GLY n 1 9 VAL n 1 10 LYS n 1 11 SER n 1 12 ALA n 1 13 TYR n 1 14 VAL n 1 15 SER n 1 16 TYR n 1 17 ASP n 1 18 VAL n 1 19 GLN n 1 20 LYS n 1 21 ARG n 1 22 THR n 1 23 ILE n 1 24 TYR n 1 25 LEU n 1 26 ASN n 1 27 ILE n 1 28 THR n 1 29 ASN n 1 30 THR n 1 31 LEU n 1 32 ASN n 1 33 ILE n 1 34 THR n 1 35 ASN n 1 36 ASN n 1 37 ASN n 1 38 TYR n 1 39 TYR n 1 40 SER n 1 41 VAL n 1 42 GLU n 1 43 VAL n 1 44 GLU n 1 45 ASN n 1 46 ILE n 1 47 THR n 1 48 ALA n 1 49 GLN n 1 50 VAL n 1 51 GLN n 1 52 PHE n 1 53 SER n 1 54 LYS n 1 55 THR n 1 56 VAL n 1 57 ILE n 1 58 GLY n 1 59 LYS n 1 60 ALA n 1 61 ARG n 1 62 LEU n 1 63 ASN n 1 64 ASN n 1 65 ILE n 1 66 SER n 1 67 ILE n 1 68 ILE n 1 69 GLY n 1 70 PRO n 1 71 LEU n 1 72 ASP n 1 73 MET n 1 74 LYS n 1 75 GLN n 1 76 ILE n 1 77 ASP n 1 78 TYR n 1 79 THR n 1 80 VAL n 1 81 PRO n 1 82 THR n 1 83 VAL n 1 84 ILE n 1 85 ALA n 1 86 GLU n 1 87 GLU n 1 88 MET n 1 89 SER n 1 90 TYR n 1 91 MET n 1 92 TYR n 1 93 ASP n 1 94 PHE n 1 95 CYS n 1 96 THR n 1 97 LEU n 1 98 ILE n 1 99 SER n 1 100 ILE n 1 101 LYS n 1 102 VAL n 1 103 HIS n 1 104 ASN n 1 105 ILE n 1 106 VAL n 1 107 LEU n 1 108 MET n 1 109 MET n 1 110 GLN n 1 111 VAL n 1 112 THR n 1 113 VAL n 1 114 THR n 1 115 THR n 1 116 THR n 1 117 TYR n 1 118 PHE n 1 119 GLY n 1 120 HIS n 1 121 SER n 1 122 GLU n 1 123 GLN n 1 124 ILE n 1 125 SER n 1 126 GLN n 1 127 GLU n 1 128 ARG n 1 129 TYR n 1 130 GLN n 1 131 TYR n 1 132 VAL n 1 133 ASP n 1 134 CYS n 1 135 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 135 _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene TMEM106B _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 9606 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code T106B_HUMAN _struct_ref.pdbx_db_accession Q9NUM4 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SIDVKYIGVKSAYVSYDVQKRTIYLNITNTLNITNNNYYSVEVENITAQVQFSKTVIGKARLNNITIIGPLDMKQIDYTV PTVIAEEMSYMYDFCTLISIKVHNIVLMMQVTVTTTYFGHSEQISQERYQYVDCG ; _struct_ref.pdbx_align_begin 120 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7U17 B 1 ? 135 ? Q9NUM4 120 ? 254 ? 120 254 2 1 7U17 A 1 ? 135 ? Q9NUM4 120 ? 254 ? 120 254 3 1 7U17 C 1 ? 135 ? Q9NUM4 120 ? 254 ? 120 254 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 7U17 SER B 66 ? UNP Q9NUM4 THR 185 'engineered mutation' 185 1 2 7U17 SER A 66 ? UNP Q9NUM4 THR 185 'engineered mutation' 185 2 3 7U17 SER C 66 ? UNP Q9NUM4 THR 185 'engineered mutation' 185 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7U17 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 7U17 _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.005 ? 3483 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 1.183 ? 4737 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 9.042 ? 522 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.123 ? 603 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.009 ? 573 ? f_plane_restr ? ? # _struct.entry_id 7U17 _struct.title ;TMEM106B(120-254) T185S singlet amyloid fibril from frontotemporal lobar degeneration with TDP-43 pathology (FTLD-TDP) type B case 2 (case 7). ; _struct.pdbx_structure_determination_methodology ? _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7U17 _struct_keywords.text 'TMEM106B, Amyloid fibril, TRANSPORT PROTEIN' _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 2 ? N N N 2 ? O N N 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 95 SG ? ? ? 1_555 A CYS 134 SG ? ? B CYS 214 B CYS 253 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf2 disulf ? ? B CYS 95 SG ? ? ? 1_555 B CYS 134 SG ? ? A CYS 214 A CYS 253 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf3 disulf ? ? C CYS 95 SG ? ? ? 1_555 C CYS 134 SG ? ? C CYS 214 C CYS 253 1_555 ? ? ? ? ? ? ? 2.031 ? ? covale1 covale one ? A ASN 26 ND2 ? ? ? 1_555 E NAG . C1 ? ? B ASN 145 B NAG 302 1_555 ? ? ? ? ? ? ? 1.437 ? N-Glycosylation covale2 covale one ? A ASN 32 ND2 ? ? ? 1_555 F NAG . C1 ? ? B ASN 151 B NAG 303 1_555 ? ? ? ? ? ? ? 1.437 ? N-Glycosylation covale3 covale one ? A ASN 45 ND2 ? ? ? 1_555 G NAG . C1 ? ? B ASN 164 B NAG 304 1_555 ? ? ? ? ? ? ? 1.440 ? N-Glycosylation covale4 covale one ? A ASN 64 ND2 ? ? ? 1_555 D NAG . C1 ? ? B ASN 183 B NAG 301 1_555 ? ? ? ? ? ? ? 1.438 ? N-Glycosylation covale5 covale one ? B ASN 26 ND2 ? ? ? 1_555 I NAG . C1 ? ? A ASN 145 A NAG 302 1_555 ? ? ? ? ? ? ? 1.437 ? N-Glycosylation covale6 covale one ? B ASN 32 ND2 ? ? ? 1_555 J NAG . C1 ? ? A ASN 151 A NAG 303 1_555 ? ? ? ? ? ? ? 1.438 ? N-Glycosylation covale7 covale one ? B ASN 45 ND2 ? ? ? 1_555 K NAG . C1 ? ? A ASN 164 A NAG 304 1_555 ? ? ? ? ? ? ? 1.441 ? N-Glycosylation covale8 covale one ? B ASN 64 ND2 ? ? ? 1_555 H NAG . C1 ? ? A ASN 183 A NAG 301 1_555 ? ? ? ? ? ? ? 1.438 ? N-Glycosylation covale9 covale one ? C ASN 26 ND2 ? ? ? 1_555 M NAG . C1 ? ? C ASN 145 C NAG 302 1_555 ? ? ? ? ? ? ? 1.437 ? N-Glycosylation covale10 covale one ? C ASN 32 ND2 ? ? ? 1_555 N NAG . C1 ? ? C ASN 151 C NAG 303 1_555 ? ? ? ? ? ? ? 1.436 ? N-Glycosylation covale11 covale one ? C ASN 45 ND2 ? ? ? 1_555 O NAG . C1 ? ? C ASN 164 C NAG 304 1_555 ? ? ? ? ? ? ? 1.439 ? N-Glycosylation covale12 covale one ? C ASN 64 ND2 ? ? ? 1_555 L NAG . C1 ? ? C ASN 183 C NAG 301 1_555 ? ? ? ? ? ? ? 1.438 ? N-Glycosylation # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 69 A . ? GLY 188 B PRO 70 A ? PRO 189 B 1 0.21 2 GLY 69 B . ? GLY 188 A PRO 70 B ? PRO 189 A 1 0.32 3 GLY 69 C . ? GLY 188 C PRO 70 C ? PRO 189 C 1 0.24 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 3 ? AA3 ? 3 ? AA4 ? 3 ? AA5 ? 3 ? AA6 ? 3 ? AA7 ? 3 ? AA8 ? 3 ? AA9 ? 3 ? AB1 ? 3 ? AB2 ? 3 ? AB3 ? 3 ? AB4 ? 3 ? AB5 ? 3 ? AB6 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA5 1 2 ? parallel AA5 2 3 ? parallel AA6 1 2 ? parallel AA6 2 3 ? parallel AA7 1 2 ? parallel AA7 2 3 ? parallel AA8 1 2 ? parallel AA8 2 3 ? parallel AA9 1 2 ? parallel AA9 2 3 ? parallel AB1 1 2 ? parallel AB1 2 3 ? parallel AB2 1 2 ? parallel AB2 2 3 ? parallel AB3 1 2 ? parallel AB3 2 3 ? parallel AB4 1 2 ? parallel AB4 2 3 ? parallel AB5 1 2 ? parallel AB5 2 3 ? parallel AB6 1 2 ? parallel AB6 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ASP B 3 ? VAL B 4 ? ASP A 122 VAL A 123 AA1 2 ASP A 3 ? LYS A 5 ? ASP B 122 LYS B 124 AA1 3 ASP C 3 ? LYS C 5 ? ASP C 122 LYS C 124 AA2 1 LYS B 10 ? SER B 11 ? LYS A 129 SER A 130 AA2 2 LYS A 10 ? SER A 11 ? LYS B 129 SER B 130 AA2 3 LYS C 10 ? SER C 11 ? LYS C 129 SER C 130 AA3 1 VAL B 14 ? SER B 15 ? VAL A 133 SER A 134 AA3 2 VAL A 14 ? SER A 15 ? VAL B 133 SER B 134 AA3 3 VAL C 14 ? SER C 15 ? VAL C 133 SER C 134 AA4 1 TYR B 24 ? LEU B 25 ? TYR A 143 LEU A 144 AA4 2 TYR A 24 ? LEU A 25 ? TYR B 143 LEU B 144 AA4 3 TYR C 24 ? LEU C 25 ? TYR C 143 LEU C 144 AA5 1 LEU B 31 ? ILE B 33 ? LEU A 150 ILE A 152 AA5 2 LEU A 31 ? ILE A 33 ? LEU B 150 ILE B 152 AA5 3 LEU C 31 ? ILE C 33 ? LEU C 150 ILE C 152 AA6 1 ASN B 37 ? TYR B 39 ? ASN A 156 TYR A 158 AA6 2 ASN A 37 ? TYR A 39 ? ASN B 156 TYR B 158 AA6 3 ASN C 37 ? TYR C 39 ? ASN C 156 TYR C 158 AA7 1 VAL B 50 ? PHE B 52 ? VAL A 169 PHE A 171 AA7 2 VAL A 50 ? PHE A 52 ? VAL B 169 PHE B 171 AA7 3 GLN C 51 ? PHE C 52 ? GLN C 170 PHE C 171 AA8 1 SER B 66 ? ILE B 67 ? SER A 185 ILE A 186 AA8 2 SER A 66 ? ILE A 67 ? SER B 185 ILE B 186 AA8 3 SER C 66 ? ILE C 67 ? SER C 185 ILE C 186 AA9 1 LEU B 71 ? ASP B 72 ? LEU A 190 ASP A 191 AA9 2 LEU A 71 ? ASP A 72 ? LEU B 190 ASP B 191 AA9 3 LEU C 71 ? ASP C 72 ? LEU C 190 ASP C 191 AB1 1 ILE B 76 ? ASP B 77 ? ILE A 195 ASP A 196 AB1 2 ILE A 76 ? ASP A 77 ? ILE B 195 ASP B 196 AB1 3 ILE C 76 ? ASP C 77 ? ILE C 195 ASP C 196 AB2 1 GLU B 87 ? MET B 88 ? GLU A 206 MET A 207 AB2 2 GLU A 87 ? MET A 88 ? GLU B 206 MET B 207 AB2 3 GLU C 87 ? MET C 88 ? GLU C 206 MET C 207 AB3 1 MET B 91 ? ASP B 93 ? MET A 210 ASP A 212 AB3 2 MET A 91 ? ASP A 93 ? MET B 210 ASP B 212 AB3 3 MET C 91 ? ASP C 93 ? MET C 210 ASP C 212 AB4 1 ILE B 98 ? ILE B 100 ? ILE A 217 ILE A 219 AB4 2 ILE A 98 ? ILE A 100 ? ILE B 217 ILE B 219 AB4 3 ILE C 98 ? ILE C 100 ? ILE C 217 ILE C 219 AB5 1 ILE B 105 ? THR B 112 ? ILE A 224 THR A 231 AB5 2 ILE A 105 ? THR A 112 ? ILE B 224 THR B 231 AB5 3 ILE C 105 ? THR C 112 ? ILE C 224 THR C 231 AB6 1 THR B 116 ? TYR B 117 ? THR A 235 TYR A 236 AB6 2 THR A 116 ? TYR A 117 ? THR B 235 TYR B 236 AB6 3 THR C 116 ? TYR C 117 ? THR C 235 TYR C 236 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O VAL B 4 ? O VAL A 123 N ASP A 3 ? N ASP B 122 AA1 2 3 N VAL A 4 ? N VAL B 123 O ASP C 3 ? O ASP C 122 AA2 1 2 O LYS B 10 ? O LYS A 129 N SER A 11 ? N SER B 130 AA2 2 3 N LYS A 10 ? N LYS B 129 O SER C 11 ? O SER C 130 AA3 1 2 O SER B 15 ? O SER A 134 N VAL A 14 ? N VAL B 133 AA3 2 3 N SER A 15 ? N SER B 134 O VAL C 14 ? O VAL C 133 AA4 1 2 O LEU B 25 ? O LEU A 144 N TYR A 24 ? N TYR B 143 AA4 2 3 N LEU A 25 ? N LEU B 144 O TYR C 24 ? O TYR C 143 AA5 1 2 O ASN B 32 ? O ASN A 151 N LEU A 31 ? N LEU B 150 AA5 2 3 N ASN A 32 ? N ASN B 151 O LEU C 31 ? O LEU C 150 AA6 1 2 O TYR B 38 ? O TYR A 157 N ASN A 37 ? N ASN B 156 AA6 2 3 N TYR A 38 ? N TYR B 157 O ASN C 37 ? O ASN C 156 AA7 1 2 O GLN B 51 ? O GLN A 170 N VAL A 50 ? N VAL B 169 AA7 2 3 N GLN A 51 ? N GLN B 170 O PHE C 52 ? O PHE C 171 AA8 1 2 O ILE B 67 ? O ILE A 186 N SER A 66 ? N SER B 185 AA8 2 3 N ILE A 67 ? N ILE B 186 O SER C 66 ? O SER C 185 AA9 1 2 O ASP B 72 ? O ASP A 191 N LEU A 71 ? N LEU B 190 AA9 2 3 N ASP A 72 ? N ASP B 191 O LEU C 71 ? O LEU C 190 AB1 1 2 O ASP B 77 ? O ASP A 196 N ILE A 76 ? N ILE B 195 AB1 2 3 N ASP A 77 ? N ASP B 196 O ILE C 76 ? O ILE C 195 AB2 1 2 O MET B 88 ? O MET A 207 N GLU A 87 ? N GLU B 206 AB2 2 3 N MET A 88 ? N MET B 207 O GLU C 87 ? O GLU C 206 AB3 1 2 O TYR B 92 ? O TYR A 211 N ASP A 93 ? N ASP B 212 AB3 2 3 N TYR A 92 ? N TYR B 211 O ASP C 93 ? O ASP C 212 AB4 1 2 O SER B 99 ? O SER A 218 N ILE A 100 ? N ILE B 219 AB4 2 3 N SER A 99 ? N SER B 218 O ILE C 100 ? O ILE C 219 AB5 1 2 O MET B 108 ? O MET A 227 N MET A 109 ? N MET B 228 AB5 2 3 N MET A 108 ? N MET B 227 O MET C 109 ? O MET C 228 AB6 1 2 O TYR B 117 ? O TYR A 236 N THR A 116 ? N THR B 235 AB6 2 3 N TYR A 117 ? N TYR B 236 O THR C 116 ? O THR C 235 # _atom_sites.entry_id 7U17 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 120 120 SER SER B . n A 1 2 ILE 2 121 121 ILE ILE B . n A 1 3 ASP 3 122 122 ASP ASP B . n A 1 4 VAL 4 123 123 VAL VAL B . n A 1 5 LYS 5 124 124 LYS LYS B . n A 1 6 TYR 6 125 125 TYR TYR B . n A 1 7 ILE 7 126 126 ILE ILE B . n A 1 8 GLY 8 127 127 GLY GLY B . n A 1 9 VAL 9 128 128 VAL VAL B . n A 1 10 LYS 10 129 129 LYS LYS B . n A 1 11 SER 11 130 130 SER SER B . n A 1 12 ALA 12 131 131 ALA ALA B . n A 1 13 TYR 13 132 132 TYR TYR B . n A 1 14 VAL 14 133 133 VAL VAL B . n A 1 15 SER 15 134 134 SER SER B . n A 1 16 TYR 16 135 135 TYR TYR B . n A 1 17 ASP 17 136 136 ASP ASP B . n A 1 18 VAL 18 137 137 VAL VAL B . n A 1 19 GLN 19 138 138 GLN GLN B . n A 1 20 LYS 20 139 139 LYS LYS B . n A 1 21 ARG 21 140 140 ARG ARG B . n A 1 22 THR 22 141 141 THR THR B . n A 1 23 ILE 23 142 142 ILE ILE B . n A 1 24 TYR 24 143 143 TYR TYR B . n A 1 25 LEU 25 144 144 LEU LEU B . n A 1 26 ASN 26 145 145 ASN ASN B . n A 1 27 ILE 27 146 146 ILE ILE B . n A 1 28 THR 28 147 147 THR THR B . n A 1 29 ASN 29 148 148 ASN ASN B . n A 1 30 THR 30 149 149 THR THR B . n A 1 31 LEU 31 150 150 LEU LEU B . n A 1 32 ASN 32 151 151 ASN ASN B . n A 1 33 ILE 33 152 152 ILE ILE B . n A 1 34 THR 34 153 153 THR THR B . n A 1 35 ASN 35 154 154 ASN ASN B . n A 1 36 ASN 36 155 155 ASN ASN B . n A 1 37 ASN 37 156 156 ASN ASN B . n A 1 38 TYR 38 157 157 TYR TYR B . n A 1 39 TYR 39 158 158 TYR TYR B . n A 1 40 SER 40 159 159 SER SER B . n A 1 41 VAL 41 160 160 VAL VAL B . n A 1 42 GLU 42 161 161 GLU GLU B . n A 1 43 VAL 43 162 162 VAL VAL B . n A 1 44 GLU 44 163 163 GLU GLU B . n A 1 45 ASN 45 164 164 ASN ASN B . n A 1 46 ILE 46 165 165 ILE ILE B . n A 1 47 THR 47 166 166 THR THR B . n A 1 48 ALA 48 167 167 ALA ALA B . n A 1 49 GLN 49 168 168 GLN GLN B . n A 1 50 VAL 50 169 169 VAL VAL B . n A 1 51 GLN 51 170 170 GLN GLN B . n A 1 52 PHE 52 171 171 PHE PHE B . n A 1 53 SER 53 172 172 SER SER B . n A 1 54 LYS 54 173 173 LYS LYS B . n A 1 55 THR 55 174 174 THR THR B . n A 1 56 VAL 56 175 175 VAL VAL B . n A 1 57 ILE 57 176 176 ILE ILE B . n A 1 58 GLY 58 177 177 GLY GLY B . n A 1 59 LYS 59 178 178 LYS LYS B . n A 1 60 ALA 60 179 179 ALA ALA B . n A 1 61 ARG 61 180 180 ARG ARG B . n A 1 62 LEU 62 181 181 LEU LEU B . n A 1 63 ASN 63 182 182 ASN ASN B . n A 1 64 ASN 64 183 183 ASN ASN B . n A 1 65 ILE 65 184 184 ILE ILE B . n A 1 66 SER 66 185 185 SER SER B . n A 1 67 ILE 67 186 186 ILE ILE B . n A 1 68 ILE 68 187 187 ILE ILE B . n A 1 69 GLY 69 188 188 GLY GLY B . n A 1 70 PRO 70 189 189 PRO PRO B . n A 1 71 LEU 71 190 190 LEU LEU B . n A 1 72 ASP 72 191 191 ASP ASP B . n A 1 73 MET 73 192 192 MET MET B . n A 1 74 LYS 74 193 193 LYS LYS B . n A 1 75 GLN 75 194 194 GLN GLN B . n A 1 76 ILE 76 195 195 ILE ILE B . n A 1 77 ASP 77 196 196 ASP ASP B . n A 1 78 TYR 78 197 197 TYR TYR B . n A 1 79 THR 79 198 198 THR THR B . n A 1 80 VAL 80 199 199 VAL VAL B . n A 1 81 PRO 81 200 200 PRO PRO B . n A 1 82 THR 82 201 201 THR THR B . n A 1 83 VAL 83 202 202 VAL VAL B . n A 1 84 ILE 84 203 203 ILE ILE B . n A 1 85 ALA 85 204 204 ALA ALA B . n A 1 86 GLU 86 205 205 GLU GLU B . n A 1 87 GLU 87 206 206 GLU GLU B . n A 1 88 MET 88 207 207 MET MET B . n A 1 89 SER 89 208 208 SER SER B . n A 1 90 TYR 90 209 209 TYR TYR B . n A 1 91 MET 91 210 210 MET MET B . n A 1 92 TYR 92 211 211 TYR TYR B . n A 1 93 ASP 93 212 212 ASP ASP B . n A 1 94 PHE 94 213 213 PHE PHE B . n A 1 95 CYS 95 214 214 CYS CYS B . n A 1 96 THR 96 215 215 THR THR B . n A 1 97 LEU 97 216 216 LEU LEU B . n A 1 98 ILE 98 217 217 ILE ILE B . n A 1 99 SER 99 218 218 SER SER B . n A 1 100 ILE 100 219 219 ILE ILE B . n A 1 101 LYS 101 220 220 LYS LYS B . n A 1 102 VAL 102 221 221 VAL VAL B . n A 1 103 HIS 103 222 222 HIS HIS B . n A 1 104 ASN 104 223 223 ASN ASN B . n A 1 105 ILE 105 224 224 ILE ILE B . n A 1 106 VAL 106 225 225 VAL VAL B . n A 1 107 LEU 107 226 226 LEU LEU B . n A 1 108 MET 108 227 227 MET MET B . n A 1 109 MET 109 228 228 MET MET B . n A 1 110 GLN 110 229 229 GLN GLN B . n A 1 111 VAL 111 230 230 VAL VAL B . n A 1 112 THR 112 231 231 THR THR B . n A 1 113 VAL 113 232 232 VAL VAL B . n A 1 114 THR 114 233 233 THR THR B . n A 1 115 THR 115 234 234 THR THR B . n A 1 116 THR 116 235 235 THR THR B . n A 1 117 TYR 117 236 236 TYR TYR B . n A 1 118 PHE 118 237 237 PHE PHE B . n A 1 119 GLY 119 238 238 GLY GLY B . n A 1 120 HIS 120 239 239 HIS HIS B . n A 1 121 SER 121 240 240 SER SER B . n A 1 122 GLU 122 241 241 GLU GLU B . n A 1 123 GLN 123 242 242 GLN GLN B . n A 1 124 ILE 124 243 243 ILE ILE B . n A 1 125 SER 125 244 244 SER SER B . n A 1 126 GLN 126 245 245 GLN GLN B . n A 1 127 GLU 127 246 246 GLU GLU B . n A 1 128 ARG 128 247 247 ARG ARG B . n A 1 129 TYR 129 248 248 TYR TYR B . n A 1 130 GLN 130 249 249 GLN GLN B . n A 1 131 TYR 131 250 250 TYR TYR B . n A 1 132 VAL 132 251 251 VAL VAL B . n A 1 133 ASP 133 252 252 ASP ASP B . n A 1 134 CYS 134 253 253 CYS CYS B . n A 1 135 GLY 135 254 254 GLY GLY B . n B 1 1 SER 1 120 120 SER SER A . n B 1 2 ILE 2 121 121 ILE ILE A . n B 1 3 ASP 3 122 122 ASP ASP A . n B 1 4 VAL 4 123 123 VAL VAL A . n B 1 5 LYS 5 124 124 LYS LYS A . n B 1 6 TYR 6 125 125 TYR TYR A . n B 1 7 ILE 7 126 126 ILE ILE A . n B 1 8 GLY 8 127 127 GLY GLY A . n B 1 9 VAL 9 128 128 VAL VAL A . n B 1 10 LYS 10 129 129 LYS LYS A . n B 1 11 SER 11 130 130 SER SER A . n B 1 12 ALA 12 131 131 ALA ALA A . n B 1 13 TYR 13 132 132 TYR TYR A . n B 1 14 VAL 14 133 133 VAL VAL A . n B 1 15 SER 15 134 134 SER SER A . n B 1 16 TYR 16 135 135 TYR TYR A . n B 1 17 ASP 17 136 136 ASP ASP A . n B 1 18 VAL 18 137 137 VAL VAL A . n B 1 19 GLN 19 138 138 GLN GLN A . n B 1 20 LYS 20 139 139 LYS LYS A . n B 1 21 ARG 21 140 140 ARG ARG A . n B 1 22 THR 22 141 141 THR THR A . n B 1 23 ILE 23 142 142 ILE ILE A . n B 1 24 TYR 24 143 143 TYR TYR A . n B 1 25 LEU 25 144 144 LEU LEU A . n B 1 26 ASN 26 145 145 ASN ASN A . n B 1 27 ILE 27 146 146 ILE ILE A . n B 1 28 THR 28 147 147 THR THR A . n B 1 29 ASN 29 148 148 ASN ASN A . n B 1 30 THR 30 149 149 THR THR A . n B 1 31 LEU 31 150 150 LEU LEU A . n B 1 32 ASN 32 151 151 ASN ASN A . n B 1 33 ILE 33 152 152 ILE ILE A . n B 1 34 THR 34 153 153 THR THR A . n B 1 35 ASN 35 154 154 ASN ASN A . n B 1 36 ASN 36 155 155 ASN ASN A . n B 1 37 ASN 37 156 156 ASN ASN A . n B 1 38 TYR 38 157 157 TYR TYR A . n B 1 39 TYR 39 158 158 TYR TYR A . n B 1 40 SER 40 159 159 SER SER A . n B 1 41 VAL 41 160 160 VAL VAL A . n B 1 42 GLU 42 161 161 GLU GLU A . n B 1 43 VAL 43 162 162 VAL VAL A . n B 1 44 GLU 44 163 163 GLU GLU A . n B 1 45 ASN 45 164 164 ASN ASN A . n B 1 46 ILE 46 165 165 ILE ILE A . n B 1 47 THR 47 166 166 THR THR A . n B 1 48 ALA 48 167 167 ALA ALA A . n B 1 49 GLN 49 168 168 GLN GLN A . n B 1 50 VAL 50 169 169 VAL VAL A . n B 1 51 GLN 51 170 170 GLN GLN A . n B 1 52 PHE 52 171 171 PHE PHE A . n B 1 53 SER 53 172 172 SER SER A . n B 1 54 LYS 54 173 173 LYS LYS A . n B 1 55 THR 55 174 174 THR THR A . n B 1 56 VAL 56 175 175 VAL VAL A . n B 1 57 ILE 57 176 176 ILE ILE A . n B 1 58 GLY 58 177 177 GLY GLY A . n B 1 59 LYS 59 178 178 LYS LYS A . n B 1 60 ALA 60 179 179 ALA ALA A . n B 1 61 ARG 61 180 180 ARG ARG A . n B 1 62 LEU 62 181 181 LEU LEU A . n B 1 63 ASN 63 182 182 ASN ASN A . n B 1 64 ASN 64 183 183 ASN ASN A . n B 1 65 ILE 65 184 184 ILE ILE A . n B 1 66 SER 66 185 185 SER SER A . n B 1 67 ILE 67 186 186 ILE ILE A . n B 1 68 ILE 68 187 187 ILE ILE A . n B 1 69 GLY 69 188 188 GLY GLY A . n B 1 70 PRO 70 189 189 PRO PRO A . n B 1 71 LEU 71 190 190 LEU LEU A . n B 1 72 ASP 72 191 191 ASP ASP A . n B 1 73 MET 73 192 192 MET MET A . n B 1 74 LYS 74 193 193 LYS LYS A . n B 1 75 GLN 75 194 194 GLN GLN A . n B 1 76 ILE 76 195 195 ILE ILE A . n B 1 77 ASP 77 196 196 ASP ASP A . n B 1 78 TYR 78 197 197 TYR TYR A . n B 1 79 THR 79 198 198 THR THR A . n B 1 80 VAL 80 199 199 VAL VAL A . n B 1 81 PRO 81 200 200 PRO PRO A . n B 1 82 THR 82 201 201 THR THR A . n B 1 83 VAL 83 202 202 VAL VAL A . n B 1 84 ILE 84 203 203 ILE ILE A . n B 1 85 ALA 85 204 204 ALA ALA A . n B 1 86 GLU 86 205 205 GLU GLU A . n B 1 87 GLU 87 206 206 GLU GLU A . n B 1 88 MET 88 207 207 MET MET A . n B 1 89 SER 89 208 208 SER SER A . n B 1 90 TYR 90 209 209 TYR TYR A . n B 1 91 MET 91 210 210 MET MET A . n B 1 92 TYR 92 211 211 TYR TYR A . n B 1 93 ASP 93 212 212 ASP ASP A . n B 1 94 PHE 94 213 213 PHE PHE A . n B 1 95 CYS 95 214 214 CYS CYS A . n B 1 96 THR 96 215 215 THR THR A . n B 1 97 LEU 97 216 216 LEU LEU A . n B 1 98 ILE 98 217 217 ILE ILE A . n B 1 99 SER 99 218 218 SER SER A . n B 1 100 ILE 100 219 219 ILE ILE A . n B 1 101 LYS 101 220 220 LYS LYS A . n B 1 102 VAL 102 221 221 VAL VAL A . n B 1 103 HIS 103 222 222 HIS HIS A . n B 1 104 ASN 104 223 223 ASN ASN A . n B 1 105 ILE 105 224 224 ILE ILE A . n B 1 106 VAL 106 225 225 VAL VAL A . n B 1 107 LEU 107 226 226 LEU LEU A . n B 1 108 MET 108 227 227 MET MET A . n B 1 109 MET 109 228 228 MET MET A . n B 1 110 GLN 110 229 229 GLN GLN A . n B 1 111 VAL 111 230 230 VAL VAL A . n B 1 112 THR 112 231 231 THR THR A . n B 1 113 VAL 113 232 232 VAL VAL A . n B 1 114 THR 114 233 233 THR THR A . n B 1 115 THR 115 234 234 THR THR A . n B 1 116 THR 116 235 235 THR THR A . n B 1 117 TYR 117 236 236 TYR TYR A . n B 1 118 PHE 118 237 237 PHE PHE A . n B 1 119 GLY 119 238 238 GLY GLY A . n B 1 120 HIS 120 239 239 HIS HIS A . n B 1 121 SER 121 240 240 SER SER A . n B 1 122 GLU 122 241 241 GLU GLU A . n B 1 123 GLN 123 242 242 GLN GLN A . n B 1 124 ILE 124 243 243 ILE ILE A . n B 1 125 SER 125 244 244 SER SER A . n B 1 126 GLN 126 245 245 GLN GLN A . n B 1 127 GLU 127 246 246 GLU GLU A . n B 1 128 ARG 128 247 247 ARG ARG A . n B 1 129 TYR 129 248 248 TYR TYR A . n B 1 130 GLN 130 249 249 GLN GLN A . n B 1 131 TYR 131 250 250 TYR TYR A . n B 1 132 VAL 132 251 251 VAL VAL A . n B 1 133 ASP 133 252 252 ASP ASP A . n B 1 134 CYS 134 253 253 CYS CYS A . n B 1 135 GLY 135 254 254 GLY GLY A . n C 1 1 SER 1 120 120 SER SER C . n C 1 2 ILE 2 121 121 ILE ILE C . n C 1 3 ASP 3 122 122 ASP ASP C . n C 1 4 VAL 4 123 123 VAL VAL C . n C 1 5 LYS 5 124 124 LYS LYS C . n C 1 6 TYR 6 125 125 TYR TYR C . n C 1 7 ILE 7 126 126 ILE ILE C . n C 1 8 GLY 8 127 127 GLY GLY C . n C 1 9 VAL 9 128 128 VAL VAL C . n C 1 10 LYS 10 129 129 LYS LYS C . n C 1 11 SER 11 130 130 SER SER C . n C 1 12 ALA 12 131 131 ALA ALA C . n C 1 13 TYR 13 132 132 TYR TYR C . n C 1 14 VAL 14 133 133 VAL VAL C . n C 1 15 SER 15 134 134 SER SER C . n C 1 16 TYR 16 135 135 TYR TYR C . n C 1 17 ASP 17 136 136 ASP ASP C . n C 1 18 VAL 18 137 137 VAL VAL C . n C 1 19 GLN 19 138 138 GLN GLN C . n C 1 20 LYS 20 139 139 LYS LYS C . n C 1 21 ARG 21 140 140 ARG ARG C . n C 1 22 THR 22 141 141 THR THR C . n C 1 23 ILE 23 142 142 ILE ILE C . n C 1 24 TYR 24 143 143 TYR TYR C . n C 1 25 LEU 25 144 144 LEU LEU C . n C 1 26 ASN 26 145 145 ASN ASN C . n C 1 27 ILE 27 146 146 ILE ILE C . n C 1 28 THR 28 147 147 THR THR C . n C 1 29 ASN 29 148 148 ASN ASN C . n C 1 30 THR 30 149 149 THR THR C . n C 1 31 LEU 31 150 150 LEU LEU C . n C 1 32 ASN 32 151 151 ASN ASN C . n C 1 33 ILE 33 152 152 ILE ILE C . n C 1 34 THR 34 153 153 THR THR C . n C 1 35 ASN 35 154 154 ASN ASN C . n C 1 36 ASN 36 155 155 ASN ASN C . n C 1 37 ASN 37 156 156 ASN ASN C . n C 1 38 TYR 38 157 157 TYR TYR C . n C 1 39 TYR 39 158 158 TYR TYR C . n C 1 40 SER 40 159 159 SER SER C . n C 1 41 VAL 41 160 160 VAL VAL C . n C 1 42 GLU 42 161 161 GLU GLU C . n C 1 43 VAL 43 162 162 VAL VAL C . n C 1 44 GLU 44 163 163 GLU GLU C . n C 1 45 ASN 45 164 164 ASN ASN C . n C 1 46 ILE 46 165 165 ILE ILE C . n C 1 47 THR 47 166 166 THR THR C . n C 1 48 ALA 48 167 167 ALA ALA C . n C 1 49 GLN 49 168 168 GLN GLN C . n C 1 50 VAL 50 169 169 VAL VAL C . n C 1 51 GLN 51 170 170 GLN GLN C . n C 1 52 PHE 52 171 171 PHE PHE C . n C 1 53 SER 53 172 172 SER SER C . n C 1 54 LYS 54 173 173 LYS LYS C . n C 1 55 THR 55 174 174 THR THR C . n C 1 56 VAL 56 175 175 VAL VAL C . n C 1 57 ILE 57 176 176 ILE ILE C . n C 1 58 GLY 58 177 177 GLY GLY C . n C 1 59 LYS 59 178 178 LYS LYS C . n C 1 60 ALA 60 179 179 ALA ALA C . n C 1 61 ARG 61 180 180 ARG ARG C . n C 1 62 LEU 62 181 181 LEU LEU C . n C 1 63 ASN 63 182 182 ASN ASN C . n C 1 64 ASN 64 183 183 ASN ASN C . n C 1 65 ILE 65 184 184 ILE ILE C . n C 1 66 SER 66 185 185 SER SER C . n C 1 67 ILE 67 186 186 ILE ILE C . n C 1 68 ILE 68 187 187 ILE ILE C . n C 1 69 GLY 69 188 188 GLY GLY C . n C 1 70 PRO 70 189 189 PRO PRO C . n C 1 71 LEU 71 190 190 LEU LEU C . n C 1 72 ASP 72 191 191 ASP ASP C . n C 1 73 MET 73 192 192 MET MET C . n C 1 74 LYS 74 193 193 LYS LYS C . n C 1 75 GLN 75 194 194 GLN GLN C . n C 1 76 ILE 76 195 195 ILE ILE C . n C 1 77 ASP 77 196 196 ASP ASP C . n C 1 78 TYR 78 197 197 TYR TYR C . n C 1 79 THR 79 198 198 THR THR C . n C 1 80 VAL 80 199 199 VAL VAL C . n C 1 81 PRO 81 200 200 PRO PRO C . n C 1 82 THR 82 201 201 THR THR C . n C 1 83 VAL 83 202 202 VAL VAL C . n C 1 84 ILE 84 203 203 ILE ILE C . n C 1 85 ALA 85 204 204 ALA ALA C . n C 1 86 GLU 86 205 205 GLU GLU C . n C 1 87 GLU 87 206 206 GLU GLU C . n C 1 88 MET 88 207 207 MET MET C . n C 1 89 SER 89 208 208 SER SER C . n C 1 90 TYR 90 209 209 TYR TYR C . n C 1 91 MET 91 210 210 MET MET C . n C 1 92 TYR 92 211 211 TYR TYR C . n C 1 93 ASP 93 212 212 ASP ASP C . n C 1 94 PHE 94 213 213 PHE PHE C . n C 1 95 CYS 95 214 214 CYS CYS C . n C 1 96 THR 96 215 215 THR THR C . n C 1 97 LEU 97 216 216 LEU LEU C . n C 1 98 ILE 98 217 217 ILE ILE C . n C 1 99 SER 99 218 218 SER SER C . n C 1 100 ILE 100 219 219 ILE ILE C . n C 1 101 LYS 101 220 220 LYS LYS C . n C 1 102 VAL 102 221 221 VAL VAL C . n C 1 103 HIS 103 222 222 HIS HIS C . n C 1 104 ASN 104 223 223 ASN ASN C . n C 1 105 ILE 105 224 224 ILE ILE C . n C 1 106 VAL 106 225 225 VAL VAL C . n C 1 107 LEU 107 226 226 LEU LEU C . n C 1 108 MET 108 227 227 MET MET C . n C 1 109 MET 109 228 228 MET MET C . n C 1 110 GLN 110 229 229 GLN GLN C . n C 1 111 VAL 111 230 230 VAL VAL C . n C 1 112 THR 112 231 231 THR THR C . n C 1 113 VAL 113 232 232 VAL VAL C . n C 1 114 THR 114 233 233 THR THR C . n C 1 115 THR 115 234 234 THR THR C . n C 1 116 THR 116 235 235 THR THR C . n C 1 117 TYR 117 236 236 TYR TYR C . n C 1 118 PHE 118 237 237 PHE PHE C . n C 1 119 GLY 119 238 238 GLY GLY C . n C 1 120 HIS 120 239 239 HIS HIS C . n C 1 121 SER 121 240 240 SER SER C . n C 1 122 GLU 122 241 241 GLU GLU C . n C 1 123 GLN 123 242 242 GLN GLN C . n C 1 124 ILE 124 243 243 ILE ILE C . n C 1 125 SER 125 244 244 SER SER C . n C 1 126 GLN 126 245 245 GLN GLN C . n C 1 127 GLU 127 246 246 GLU GLU C . n C 1 128 ARG 128 247 247 ARG ARG C . n C 1 129 TYR 129 248 248 TYR TYR C . n C 1 130 GLN 130 249 249 GLN GLN C . n C 1 131 TYR 131 250 250 TYR TYR C . n C 1 132 VAL 132 251 251 VAL VAL C . n C 1 133 ASP 133 252 252 ASP ASP C . n C 1 134 CYS 134 253 253 CYS CYS C . n C 1 135 GLY 135 254 254 GLY GLY C . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email awpfitzpatrick@gmail.com _pdbx_contact_author.name_first Anthony _pdbx_contact_author.name_last Fitzpatrick _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-3527-7961 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NAG 1 301 263 NAG NAG B . E 2 NAG 1 302 265 NAG NAG B . F 2 NAG 1 303 266 NAG NAG B . G 2 NAG 1 304 267 NAG NAG B . H 2 NAG 1 301 263 NAG NAG A . I 2 NAG 1 302 265 NAG NAG A . J 2 NAG 1 303 266 NAG NAG A . K 2 NAG 1 304 267 NAG NAG A . L 2 NAG 1 301 263 NAG NAG C . M 2 NAG 1 302 265 NAG NAG C . N 2 NAG 1 303 266 NAG NAG C . O 2 NAG 1 304 267 NAG NAG C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-03-23 2 'Structure model' 1 1 2022-04-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.20.1_4487: _software.pdbx_ordinal 1 # _pdbx_entry_details.entry_id 7U17 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y # _em_3d_fitting.entry_id 7U17 _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7U17 _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 31000 _em_3d_reconstruction.resolution 3.0 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type HELICAL _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.4 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name ;TMEM106B(120-254) T185S singlet amyloid fibril from frontotemporal lobar degeneration with TDP-43 pathology (FTLD-TDP) type B case 2 (case 7). ; _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 7U17 _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max 2800 _em_imaging.nominal_defocus_min 1400 _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 7U17 _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7U17 _em_experiment.id 1 _em_experiment.aggregation_state FILAMENT _em_experiment.reconstruction_method HELICAL _em_experiment.entity_assembly_id 1 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 H B VAL 128 ? ? O C VAL 128 ? ? 1.59 2 1 OG A SER 120 ? ? OE2 C GLU 241 ? ? 1.88 3 1 OH B TYR 248 ? ? O A GLY 127 ? ? 2.12 4 1 ND2 B ASN 145 ? ? O5 B NAG 302 ? ? 2.14 5 1 ND2 C ASN 145 ? ? O5 C NAG 302 ? ? 2.14 6 1 ND2 A ASN 145 ? ? O5 A NAG 302 ? ? 2.14 7 1 O B GLY 127 ? ? OH C TYR 248 ? ? 2.17 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.angular_rotation_per_subunit -0.67 _em_helical_entity.axial_rise_per_subunit 4.8 _em_helical_entity.axial_symmetry C1 _em_helical_entity.details ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 60 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? _em_image_recording.avg_electron_dose_per_subtomogram ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 1 1 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? ? ? 8 'MODEL REFINEMENT' ? ? ? ? ? ? 9 OTHER ? ? ? ? ? ? 10 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 12 CLASSIFICATION ? ? ? 1 ? ? 13 RECONSTRUCTION ? ? ? 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number UO1NS110438 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id NAG _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id NAG _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 2-acetamido-2-deoxy-beta-D-glucopyranose _pdbx_entity_nonpoly.comp_id NAG # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details ? #