HEADER DNA 28-FEB-22 7U3P TITLE [3T7] SELF-ASSEMBLING TENSEGRITY TRIANGLE WITH THREE TURNS OF DNA PER TITLE 2 AXIS WITH R3 SYMMETRY COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(P*GP*TP*AP*CP*TP*CP*AP*GP*CP*AP*TP*CP*TP*GP*AP*TP*GP*T)-3'); COMPND 4 CHAIN: C; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (31-MER); COMPND 8 CHAIN: A; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'-D(P*CP*CP*GP*TP*AP*CP*A)-3'); COMPND 12 CHAIN: B; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 4; COMPND 15 MOLECULE: DNA (5'-D(P*GP*GP*CP*TP*GP*C)-3'); COMPND 16 CHAIN: D; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630; SOURCE 13 MOL_ID: 4; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630 KEYWDS TENSEGRITY TRIANGLE, SELF-ASSEMBLING CRYSTAL, DNA EXPDTA X-RAY DIFFRACTION AUTHOR K.WOLOSZYN,S.VECCHIONI,B.LU,Y.MA,N.C.SEEMAN,R.SHA,Y.P.OHAYON REVDAT 3 25-OCT-23 7U3P 1 REMARK REVDAT 2 21-DEC-22 7U3P 1 JRNL REVDAT 1 28-SEP-22 7U3P 0 JRNL AUTH K.WOLOSZYN,S.VECCHIONI,Y.P.OHAYON,B.LU,Y.MA,Q.HUANG,E.ZHU, JRNL AUTH 2 D.CHERNOVOLENKO,T.MARKUS,N.JONOSKA,C.MAO,N.C.SEEMAN,R.SHA JRNL TITL AUGMENTED DNA NANOARCHITECTURES: A STRUCTURAL LIBRARY OF 3D JRNL TITL 2 SELF-ASSEMBLING TENSEGRITY TRIANGLE VARIANTS. JRNL REF ADV MATER V. 34 06876 2022 JRNL REFN ISSN 1521-4095 JRNL PMID 36100349 JRNL DOI 10.1002/ADMA.202206876 REMARK 2 REMARK 2 RESOLUTION. 6.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 6.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 64.3 REMARK 3 NUMBER OF REFLECTIONS : 1885 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.130 REMARK 3 R VALUE (WORKING SET) : 0.128 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.260 REMARK 3 FREE R VALUE TEST SET COUNT : 118 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.5500 - 6.0600 0.64 1767 118 0.1277 0.1740 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.000 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.364 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 549.8 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 638.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.026 1418 REMARK 3 ANGLE : 2.336 2177 REMARK 3 CHIRALITY : 0.137 247 REMARK 3 PLANARITY : 0.011 62 REMARK 3 DIHEDRAL : 43.270 604 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN C AND RESID 101:118 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.114 -32.563 14.126 REMARK 3 T TENSOR REMARK 3 T11: 8.5775 T22: 6.7466 REMARK 3 T33: 8.0920 T12: 1.7063 REMARK 3 T13: -2.8863 T23: 3.2581 REMARK 3 L TENSOR REMARK 3 L11: 6.3337 L22: 6.3560 REMARK 3 L33: 4.8361 L12: 3.1814 REMARK 3 L13: -1.3436 L23: 4.0341 REMARK 3 S TENSOR REMARK 3 S11: 7.0867 S12: 2.9598 S13: 1.7157 REMARK 3 S21: -3.3703 S22: -0.1778 S23: -0.2258 REMARK 3 S31: -0.2549 S32: -2.3569 S33: 1.6943 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 101:121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.228 -12.305 33.769 REMARK 3 T TENSOR REMARK 3 T11: 6.4494 T22: 4.6674 REMARK 3 T33: 4.4513 T12: 1.1081 REMARK 3 T13: -1.4230 T23: 3.2185 REMARK 3 L TENSOR REMARK 3 L11: 4.2095 L22: 8.9928 REMARK 3 L33: 2.2878 L12: -1.8856 REMARK 3 L13: -2.9785 L23: 2.5209 REMARK 3 S TENSOR REMARK 3 S11: 2.2705 S12: 1.4237 S13: 1.7729 REMARK 3 S21: -2.6309 S22: 0.1311 S23: -2.6643 REMARK 3 S31: 0.4115 S32: -0.4231 S33: 1.6568 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 122:131 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.288 -37.046 12.780 REMARK 3 T TENSOR REMARK 3 T11: 8.4022 T22: 7.3156 REMARK 3 T33: 9.6684 T12: 0.6035 REMARK 3 T13: -4.4393 T23: 0.7263 REMARK 3 L TENSOR REMARK 3 L11: 8.7372 L22: 3.5579 REMARK 3 L33: 7.6302 L12: 1.7959 REMARK 3 L13: -7.5128 L23: 0.2427 REMARK 3 S TENSOR REMARK 3 S11: -1.8869 S12: -0.7435 S13: -0.7599 REMARK 3 S21: 1.3625 S22: -0.4542 S23: 0.2751 REMARK 3 S31: 3.2638 S32: 6.2179 S33: 1.0347 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN B AND RESID 101:107 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.637 -12.999 32.431 REMARK 3 T TENSOR REMARK 3 T11: 7.7920 T22: 3.1025 REMARK 3 T33: 3.8769 T12: 0.2686 REMARK 3 T13: -0.5251 T23: 0.9354 REMARK 3 L TENSOR REMARK 3 L11: 3.8208 L22: 3.1709 REMARK 3 L33: 8.4680 L12: -0.7294 REMARK 3 L13: -5.5280 L23: 0.4345 REMARK 3 S TENSOR REMARK 3 S11: 4.7483 S12: -0.3954 S13: -1.2891 REMARK 3 S21: -5.6731 S22: -1.3795 S23: 3.2636 REMARK 3 S31: 2.7158 S32: 1.3895 S33: -3.2144 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN D AND RESID 109:114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.700 -5.338 45.359 REMARK 3 T TENSOR REMARK 3 T11: 6.8214 T22: 5.9610 REMARK 3 T33: 6.3031 T12: 0.2459 REMARK 3 T13: -2.2882 T23: 0.7050 REMARK 3 L TENSOR REMARK 3 L11: 4.7722 L22: 0.4100 REMARK 3 L33: 5.1870 L12: -1.4012 REMARK 3 L13: -4.9236 L23: 1.4787 REMARK 3 S TENSOR REMARK 3 S11: -0.6922 S12: -1.5240 S13: -1.1330 REMARK 3 S21: 2.4244 S22: 2.3400 S23: -3.5240 REMARK 3 S31: 3.2770 S32: 1.3172 S33: -1.2597 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7U3P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1000263258. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00743 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 2042 REMARK 200 RESOLUTION RANGE HIGH (A) : 6.060 REMARK 200 RESOLUTION RANGE LOW (A) : 93.705 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.7 REMARK 200 DATA REDUNDANCY : 10.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 6.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 6.81 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 10.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 1.18.2_3874 REMARK 200 STARTING MODEL: PDB ENTRY 3GBI REMARK 200 REMARK 200 REMARK: RHOMBOHEDRAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 92.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 16.4 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MOPS, 125 MM MAGNESIUM SULFATE, REMARK 280 PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 79.60400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 45.95939 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 42.58000 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 79.60400 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 45.95939 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 42.58000 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 79.60400 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 45.95939 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.58000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 91.91878 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 85.16000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 91.91878 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 85.16000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 91.91878 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 85.16000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, A, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, A, B, D REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, A, B, D REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O6 DG C 101 N4 DC D 114 7444 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG C 101 O3' DG C 101 C3' 0.084 REMARK 500 DG C 101 N9 DG C 101 C4 -0.067 REMARK 500 DT C 102 O3' DT C 102 C3' 0.078 REMARK 500 DT C 102 C1' DT C 102 N1 0.119 REMARK 500 DA C 103 O3' DA C 103 C3' -0.046 REMARK 500 DA C 103 C5 DA C 103 C6 0.056 REMARK 500 DC C 104 C1' DC C 104 N1 -0.096 REMARK 500 DA C 107 C5' DA C 107 C4' 0.056 REMARK 500 DA C 107 O3' DA C 107 C3' 0.079 REMARK 500 DG C 108 C2 DG C 108 N3 -0.050 REMARK 500 DG C 114 O3' DG C 114 C3' -0.051 REMARK 500 DA C 115 O3' DA C 115 C3' -0.054 REMARK 500 DT C 116 C1' DT C 116 N1 -0.098 REMARK 500 DG C 117 C5' DG C 117 C4' 0.047 REMARK 500 DG C 117 O3' DG C 117 C3' 0.159 REMARK 500 DG A 106 P DG A 106 O5' 0.065 REMARK 500 DG A 106 C5' DG A 106 C4' 0.051 REMARK 500 DC A 107 C5' DC A 107 C4' 0.043 REMARK 500 DT A 109 O3' DT A 109 C3' -0.099 REMARK 500 DA A 112 C5' DA A 112 C4' 0.102 REMARK 500 DA A 112 C3' DA A 112 C2' 0.112 REMARK 500 DA A 112 C2' DA A 112 C1' 0.073 REMARK 500 DA A 112 O3' DA A 112 C3' 0.242 REMARK 500 DC A 113 P DC A 113 O5' 0.115 REMARK 500 DC A 113 O5' DC A 113 C5' 0.156 REMARK 500 DC A 113 C5' DC A 113 C4' 0.104 REMARK 500 DG A 114 N7 DG A 114 C8 -0.039 REMARK 500 DC A 120 C1' DC A 120 N1 0.098 REMARK 500 DC A 120 C2 DC A 120 N3 0.049 REMARK 500 DA A 123 O3' DA A 123 C3' 0.091 REMARK 500 DT A 124 P DT A 124 O5' 0.062 REMARK 500 DT A 124 C1' DT A 124 N1 0.137 REMARK 500 DG A 128 O3' DG A 128 C3' -0.043 REMARK 500 DA A 129 C5' DA A 129 C4' 0.051 REMARK 500 DC B 101 O3' DC B 101 C3' -0.059 REMARK 500 DC B 101 C1' DC B 101 N1 0.090 REMARK 500 DC B 102 C1' DC B 102 N1 -0.132 REMARK 500 DC B 102 C5 DC B 102 C6 -0.048 REMARK 500 DA B 105 O3' DA B 105 C3' -0.051 REMARK 500 DA B 107 C3' DA B 107 C2' -0.056 REMARK 500 DA B 107 N9 DA B 107 C4 -0.043 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG C 101 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DT C 102 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA C 103 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC C 104 O4' - C4' - C3' ANGL. DEV. = -3.3 DEGREES REMARK 500 DC C 104 C3' - C2' - C1' ANGL. DEV. = -6.8 DEGREES REMARK 500 DG C 108 O4' - C4' - C3' ANGL. DEV. = -4.9 DEGREES REMARK 500 DG C 108 C1' - O4' - C4' ANGL. DEV. = -7.0 DEGREES REMARK 500 DG C 108 C4' - C3' - C2' ANGL. DEV. = -5.5 DEGREES REMARK 500 DG C 108 O4' - C1' - N9 ANGL. DEV. = 6.9 DEGREES REMARK 500 DG C 108 N9 - C4 - C5 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG C 108 N3 - C4 - N9 ANGL. DEV. = -3.9 DEGREES REMARK 500 DC C 112 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 DT C 113 O5' - P - OP1 ANGL. DEV. = -5.8 DEGREES REMARK 500 DA C 115 O3' - P - OP1 ANGL. DEV. = 6.7 DEGREES REMARK 500 DA C 115 C4' - C3' - C2' ANGL. DEV. = -4.6 DEGREES REMARK 500 DA C 115 C3' - C2' - C1' ANGL. DEV. = -5.8 DEGREES REMARK 500 DA C 115 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT C 116 N3 - C4 - O4 ANGL. DEV. = 3.8 DEGREES REMARK 500 DC A 104 O4' - C1' - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 DG A 106 O5' - P - OP2 ANGL. DEV. = 8.7 DEGREES REMARK 500 DG A 106 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC A 107 O5' - P - OP1 ANGL. DEV. = 7.7 DEGREES REMARK 500 DC A 107 C3' - C2' - C1' ANGL. DEV. = -4.8 DEGREES REMARK 500 DT A 111 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DA A 112 O5' - P - OP1 ANGL. DEV. = -7.1 DEGREES REMARK 500 DA A 112 C3' - O3' - P ANGL. DEV. = 11.3 DEGREES REMARK 500 DC A 113 OP1 - P - OP2 ANGL. DEV. = -16.2 DEGREES REMARK 500 DC A 113 O5' - P - OP2 ANGL. DEV. = 15.3 DEGREES REMARK 500 DC A 113 C5' - C4' - O4' ANGL. DEV. = 7.2 DEGREES REMARK 500 DG A 114 C5 - C6 - O6 ANGL. DEV. = -3.8 DEGREES REMARK 500 DC A 117 O4' - C1' - N1 ANGL. DEV. = 4.0 DEGREES REMARK 500 DA A 118 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 DC A 120 O3' - P - OP1 ANGL. DEV. = 10.3 DEGREES REMARK 500 DA A 121 C3' - C2' - C1' ANGL. DEV. = -5.0 DEGREES REMARK 500 DA A 123 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT A 124 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG A 125 O3' - P - OP1 ANGL. DEV. = 8.6 DEGREES REMARK 500 DT A 131 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DC B 101 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC B 102 N1 - C2 - O2 ANGL. DEV. = 3.6 DEGREES REMARK 500 DG B 103 O5' - P - OP1 ANGL. DEV. = -5.8 DEGREES REMARK 500 DT B 104 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 DA B 105 C3' - C2' - C1' ANGL. DEV. = -4.9 DEGREES REMARK 500 DA B 105 O4' - C1' - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 DC B 106 C3' - C2' - C1' ANGL. DEV. = -6.4 DEGREES REMARK 500 DC B 106 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 DA B 107 C3' - C2' - C1' ANGL. DEV. = -5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GBI RELATED DB: PDB REMARK 900 UNMODIFIED TRIANGLE DBREF 7U3P C 101 118 PDB 7U3P 7U3P 101 118 DBREF 7U3P A 101 131 PDB 7U3P 7U3P 101 131 DBREF 7U3P B 101 107 PDB 7U3P 7U3P 101 107 DBREF 7U3P D 109 114 PDB 7U3P 7U3P 109 114 SEQRES 1 C 18 DG DT DA DC DT DC DA DG DC DA DT DC DT SEQRES 2 C 18 DG DA DT DG DT SEQRES 1 A 31 DA DC DG DC DA DG DC DC DT DG DT DA DC SEQRES 2 A 31 DG DG DA DC DA DT DC DA DG DA DT DG DC SEQRES 3 A 31 DT DG DA DG DT SEQRES 1 B 7 DC DC DG DT DA DC DA SEQRES 1 D 6 DG DG DC DT DG DC CRYST1 159.208 159.208 127.740 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006281 0.003626 0.000000 0.00000 SCALE2 0.000000 0.007253 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007828 0.00000