HEADER DNA 28-FEB-22 7U3X TITLE [F233] SELF-ASSEMBLING TENSEGRITY TRIANGLE WITH TWO TURNS, THREE TURNS TITLE 2 AND THREE TURNS OF DNA PER AXIS BY EXTENSION WITH P1 SYMMETRY COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (31-MER); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*TP*TP*AP*GP*TP*CP*GP*TP*GP*GP*CP*TP*CP*G)-3'); COMPND 7 CHAIN: E; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA (5'- COMPND 11 D(*TP*GP*CP*GP*CP*TP*AP*GP*CP*GP*GP*AP*TP*CP*TP*TP*GP*TP*GP*GP*CP*TP* COMPND 12 GP*C)-3'); COMPND 13 CHAIN: D; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: DNA (31-MER); COMPND 17 CHAIN: B; COMPND 18 ENGINEERED: YES; COMPND 19 MOL_ID: 5; COMPND 20 MOLECULE: DNA (5'- COMPND 21 D(*TP*CP*TP*AP*GP*CP*AP*TP*AP*GP*AP*CP*TP*GP*AP*TP*GP*TP*GP*GP*TP*AP* COMPND 22 GP*G)-3'); COMPND 23 CHAIN: F; COMPND 24 ENGINEERED: YES; COMPND 25 MOL_ID: 6; COMPND 26 MOLECULE: DNA (5'- COMPND 27 D(*AP*AP*CP*CP*TP*AP*CP*CP*TP*GP*GP*CP*AP*GP*GP*AP*CP*GP*AP*CP*T)- COMPND 28 3'); COMPND 29 CHAIN: C; COMPND 30 ENGINEERED: YES; COMPND 31 MOL_ID: 7; COMPND 32 MOLECULE: DNA (5'- COMPND 33 D(P*TP*CP*AP*CP*CP*TP*GP*CP*CP*AP*CP*CP*GP*TP*AP*CP*AP*CP*CP*GP*A)- COMPND 34 3'); COMPND 35 CHAIN: M; COMPND 36 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630; SOURCE 13 MOL_ID: 4; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630; SOURCE 17 MOL_ID: 5; SOURCE 18 SYNTHETIC: YES; SOURCE 19 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 20 ORGANISM_TAXID: 32630; SOURCE 21 MOL_ID: 6; SOURCE 22 SYNTHETIC: YES; SOURCE 23 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 24 ORGANISM_TAXID: 32630; SOURCE 25 MOL_ID: 7; SOURCE 26 SYNTHETIC: YES; SOURCE 27 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 28 ORGANISM_TAXID: 32630 KEYWDS TENSEGRITY TRIANGLE, SELF-ASSEMBLING CRYSTAL, DNA EXPDTA X-RAY DIFFRACTION AUTHOR K.WOLOSZYN,S.VECCHIONI,N.C.SEEMAN,R.SHA,Y.P.OHAYON REVDAT 3 25-OCT-23 7U3X 1 REMARK REVDAT 2 21-DEC-22 7U3X 1 JRNL REVDAT 1 28-SEP-22 7U3X 0 JRNL AUTH K.WOLOSZYN,S.VECCHIONI,Y.P.OHAYON,B.LU,Y.MA,Q.HUANG,E.ZHU, JRNL AUTH 2 D.CHERNOVOLENKO,T.MARKUS,N.JONOSKA,C.MAO,N.C.SEEMAN,R.SHA JRNL TITL AUGMENTED DNA NANOARCHITECTURES: A STRUCTURAL LIBRARY OF 3D JRNL TITL 2 SELF-ASSEMBLING TENSEGRITY TRIANGLE VARIANTS. JRNL REF ADV MATER V. 34 06876 2022 JRNL REFN ISSN 1521-4095 JRNL PMID 36100349 JRNL DOI 10.1002/ADMA.202206876 REMARK 2 REMARK 2 RESOLUTION. 5.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 5.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 68.8 REMARK 3 NUMBER OF REFLECTIONS : 5080 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.126 REMARK 3 R VALUE (WORKING SET) : 0.124 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.370 REMARK 3 FREE R VALUE TEST SET COUNT : 273 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.0500 - 7.1500 0.97 3408 180 0.1122 0.1641 REMARK 3 2 7.1500 - 5.6800 0.41 1399 93 0.3230 0.3481 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.676 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.685 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 400.1 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 441.0 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.033 3793 REMARK 3 ANGLE : 2.603 5841 REMARK 3 CHIRALITY : 0.168 658 REMARK 3 PLANARITY : 0.014 166 REMARK 3 DIHEDRAL : 42.851 1633 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 101 THROUGH 131) REMARK 3 ORIGIN FOR THE GROUP (A): 14.7130 21.3144 -3.1374 REMARK 3 T TENSOR REMARK 3 T11: 8.0063 T22: 2.4906 REMARK 3 T33: 3.3047 T12: 0.1359 REMARK 3 T13: -0.9378 T23: -1.3517 REMARK 3 L TENSOR REMARK 3 L11: 4.5262 L22: 8.6641 REMARK 3 L33: 0.7049 L12: -2.9134 REMARK 3 L13: -2.6968 L23: -0.7466 REMARK 3 S TENSOR REMARK 3 S11: -0.9324 S12: 0.4216 S13: 0.5457 REMARK 3 S21: -0.9583 S22: 1.1710 S23: -6.0552 REMARK 3 S31: -4.5409 S32: 1.7806 S33: -0.7351 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'E' AND RESID 101 THROUGH 114) REMARK 3 ORIGIN FOR THE GROUP (A): 24.7240 -8.3986 7.1110 REMARK 3 T TENSOR REMARK 3 T11: 3.2429 T22: 4.8172 REMARK 3 T33: 6.1971 T12: -0.1356 REMARK 3 T13: -3.2622 T23: -4.4880 REMARK 3 L TENSOR REMARK 3 L11: 0.8664 L22: 3.7619 REMARK 3 L33: 2.8002 L12: -1.2453 REMARK 3 L13: -1.5810 L23: 2.4215 REMARK 3 S TENSOR REMARK 3 S11: 0.7175 S12: 1.7697 S13: -1.2861 REMARK 3 S21: 1.1259 S22: -0.4422 S23: -1.2003 REMARK 3 S31: 0.4447 S32: 0.3943 S33: 0.3224 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 101 THROUGH 124) REMARK 3 ORIGIN FOR THE GROUP (A): 6.5377 39.5847 -6.4509 REMARK 3 T TENSOR REMARK 3 T11: 7.8017 T22: 1.4367 REMARK 3 T33: 4.8300 T12: -0.8519 REMARK 3 T13: 0.8620 T23: -1.8020 REMARK 3 L TENSOR REMARK 3 L11: 0.2566 L22: 3.6139 REMARK 3 L33: 0.1924 L12: -1.0197 REMARK 3 L13: -0.1356 L23: -0.4915 REMARK 3 S TENSOR REMARK 3 S11: 0.6051 S12: -1.9623 S13: 2.3653 REMARK 3 S21: 1.8288 S22: 0.1626 S23: 0.5287 REMARK 3 S31: -2.9261 S32: -0.5934 S33: 0.8825 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 101 THROUGH 131) REMARK 3 ORIGIN FOR THE GROUP (A): -10.9493 12.4732 17.9295 REMARK 3 T TENSOR REMARK 3 T11: 6.9527 T22: 3.8433 REMARK 3 T33: 1.5838 T12: -2.5831 REMARK 3 T13: -0.2682 T23: -1.8954 REMARK 3 L TENSOR REMARK 3 L11: 5.1493 L22: 3.8676 REMARK 3 L33: 1.7822 L12: -0.5873 REMARK 3 L13: -2.6465 L23: -0.9698 REMARK 3 S TENSOR REMARK 3 S11: 0.1101 S12: -1.5108 S13: -1.1566 REMARK 3 S21: -0.1674 S22: -3.1741 S23: 2.0693 REMARK 3 S31: -0.1209 S32: -0.9951 S33: 1.0330 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN 'F' AND RESID 101 THROUGH 124) REMARK 3 ORIGIN FOR THE GROUP (A): -16.2519 2.9918 36.8438 REMARK 3 T TENSOR REMARK 3 T11: 7.2509 T22: 7.1438 REMARK 3 T33: 0.8446 T12: 0.6251 REMARK 3 T13: -1.4206 T23: 0.0731 REMARK 3 L TENSOR REMARK 3 L11: 1.9248 L22: 0.2521 REMARK 3 L33: 1.0821 L12: -0.0703 REMARK 3 L13: -1.2211 L23: 0.5464 REMARK 3 S TENSOR REMARK 3 S11: -0.6349 S12: -2.6478 S13: -1.3842 REMARK 3 S21: 3.7874 S22: 0.6887 S23: -2.1330 REMARK 3 S31: -0.2458 S32: 1.4446 S33: 0.0175 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 101 THROUGH 121) REMARK 3 ORIGIN FOR THE GROUP (A): 1.6591 -6.3838 15.2982 REMARK 3 T TENSOR REMARK 3 T11: 2.1419 T22: 5.0402 REMARK 3 T33: 2.1938 T12: -0.3713 REMARK 3 T13: -0.6041 T23: -2.4229 REMARK 3 L TENSOR REMARK 3 L11: 8.7853 L22: 6.7801 REMARK 3 L33: 5.9450 L12: -1.2697 REMARK 3 L13: 3.4339 L23: -6.1414 REMARK 3 S TENSOR REMARK 3 S11: 1.0665 S12: -1.7738 S13: -0.7367 REMARK 3 S21: 2.8875 S22: 2.1101 S23: -0.4599 REMARK 3 S31: -3.9532 S32: 1.2995 S33: -0.3677 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN 'M' AND RESID 101 THROUGH 121) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2895 5.1831 4.9979 REMARK 3 T TENSOR REMARK 3 T11: 4.5224 T22: 4.3613 REMARK 3 T33: 2.8585 T12: 2.2880 REMARK 3 T13: 1.3258 T23: -0.5205 REMARK 3 L TENSOR REMARK 3 L11: 1.9930 L22: 6.4898 REMARK 3 L33: 1.9765 L12: 5.7339 REMARK 3 L13: 2.0307 L23: -1.3036 REMARK 3 S TENSOR REMARK 3 S11: -0.5383 S12: -0.7430 S13: -2.1292 REMARK 3 S21: -1.2542 S22: 1.7369 S23: -3.9250 REMARK 3 S31: -1.6807 S32: -2.3721 S33: 0.4455 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7U3X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1000263292. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00743 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5122 REMARK 200 RESOLUTION RANGE HIGH (A) : 5.680 REMARK 200 RESOLUTION RANGE LOW (A) : 97.489 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.1 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 5.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 6.14 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3GBI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MOPS, MAGNESIUM SULFATE, SODIUM REMARK 280 HYDROXIDE, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEPTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEPTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E, D, B, F, C, M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N2 DG A 129 O2 DC D 105 1.77 REMARK 500 N2 DG B 122 O2 DC F 112 2.01 REMARK 500 N3 DT C 109 N1 DA M 110 2.11 REMARK 500 N6 DA A 118 O4 DT D 115 2.13 REMARK 500 N2 DG A 110 O2 DC M 102 2.15 REMARK 500 N2 DG C 111 O2 DC M 108 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC A 103 P DC A 103 O5' 0.081 REMARK 500 DC A 103 C5' DC A 103 C4' 0.059 REMARK 500 DC A 103 O3' DC A 103 C3' 0.155 REMARK 500 DC A 103 C1' DC A 103 N1 0.114 REMARK 500 DA A 105 O3' DA A 105 C3' 0.112 REMARK 500 DA A 105 C5 DA A 105 C6 0.067 REMARK 500 DA A 105 N9 DA A 105 C4 0.044 REMARK 500 DG A 106 O3' DG A 106 C3' -0.044 REMARK 500 DG A 106 C5 DG A 106 C6 0.072 REMARK 500 DG A 106 C5 DG A 106 N7 0.038 REMARK 500 DC A 107 O3' DC A 107 C3' -0.076 REMARK 500 DC A 107 C1' DC A 107 N1 0.089 REMARK 500 DA A 111 O3' DA A 111 C3' -0.073 REMARK 500 DA A 111 N9 DA A 111 C4 0.068 REMARK 500 DT A 112 C5' DT A 112 C4' 0.045 REMARK 500 DT A 112 O3' DT A 112 C3' 0.217 REMARK 500 DT A 112 C1' DT A 112 N1 0.095 REMARK 500 DC A 113 O3' DC A 113 C3' 0.108 REMARK 500 DC A 113 C1' DC A 113 N1 0.165 REMARK 500 DG A 115 P DG A 115 O5' 0.072 REMARK 500 DG A 115 O5' DG A 115 C5' 0.111 REMARK 500 DG A 115 C5' DG A 115 C4' 0.055 REMARK 500 DG A 115 O3' DG A 115 C3' 0.183 REMARK 500 DA A 116 O3' DA A 116 C3' -0.076 REMARK 500 DA A 116 N9 DA A 116 C4 0.037 REMARK 500 DC A 117 C1' DC A 117 N1 -0.099 REMARK 500 DA A 118 O3' DA A 118 C3' 0.094 REMARK 500 DA A 119 N3 DA A 119 C4 -0.043 REMARK 500 DA A 119 N9 DA A 119 C4 -0.084 REMARK 500 DG A 120 O3' DG A 120 C3' -0.063 REMARK 500 DT A 122 O3' DT A 122 C3' -0.052 REMARK 500 DC A 123 N1 DC A 123 C6 -0.042 REMARK 500 DT A 127 O3' DT A 127 C3' 0.093 REMARK 500 DG A 129 C5' DG A 129 C4' 0.063 REMARK 500 DG A 129 O3' DG A 129 C3' 0.118 REMARK 500 DG A 131 P DG A 131 O5' 0.066 REMARK 500 DG A 131 C5' DG A 131 C4' 0.056 REMARK 500 DT E 102 P DT E 102 O5' 0.076 REMARK 500 DT E 102 O5' DT E 102 C5' 0.105 REMARK 500 DT E 102 C5' DT E 102 C4' 0.049 REMARK 500 DT E 102 O3' DT E 102 C3' 0.083 REMARK 500 DT E 102 C5 DT E 102 C6 -0.046 REMARK 500 DA E 103 C4 DA E 103 C5 -0.048 REMARK 500 DA E 103 C5 DA E 103 C6 -0.057 REMARK 500 DA E 103 C5 DA E 103 N7 -0.041 REMARK 500 DA E 103 N9 DA E 103 C4 -0.062 REMARK 500 DG E 104 O3' DG E 104 C3' -0.072 REMARK 500 DG E 104 N1 DG E 104 C2 -0.048 REMARK 500 DG E 104 C2 DG E 104 N3 -0.057 REMARK 500 DG E 104 C4 DG E 104 C5 -0.080 REMARK 500 REMARK 500 THIS ENTRY HAS 222 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC A 101 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 DC A 103 O4' - C1' - N1 ANGL. DEV. = 5.7 DEGREES REMARK 500 DC A 103 C3' - O3' - P ANGL. DEV. = 8.9 DEGREES REMARK 500 DG A 104 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DA A 105 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DG A 106 C3' - C2' - C1' ANGL. DEV. = -4.9 DEGREES REMARK 500 DG A 106 O4' - C1' - N9 ANGL. DEV. = 6.8 DEGREES REMARK 500 DG A 106 N9 - C4 - C5 ANGL. DEV. = 2.8 DEGREES REMARK 500 DC A 107 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 DT A 109 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DG A 110 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 DA A 111 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 DT A 112 OP1 - P - OP2 ANGL. DEV. = 11.2 DEGREES REMARK 500 DT A 112 O5' - P - OP1 ANGL. DEV. = -16.3 DEGREES REMARK 500 DT A 112 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT A 112 C3' - O3' - P ANGL. DEV. = 8.5 DEGREES REMARK 500 DG A 114 O5' - P - OP2 ANGL. DEV. = -11.4 DEGREES REMARK 500 DG A 114 C3' - C2' - C1' ANGL. DEV. = -7.2 DEGREES REMARK 500 DG A 115 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 DG A 115 C3' - O3' - P ANGL. DEV. = 10.7 DEGREES REMARK 500 DA A 116 O3' - P - OP1 ANGL. DEV. = 10.3 DEGREES REMARK 500 DA A 116 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 DC A 117 C1' - O4' - C4' ANGL. DEV. = -6.6 DEGREES REMARK 500 DC A 117 C3' - C2' - C1' ANGL. DEV. = -7.6 DEGREES REMARK 500 DC A 117 C6 - N1 - C2 ANGL. DEV. = 2.6 DEGREES REMARK 500 DA A 118 O4' - C4' - C3' ANGL. DEV. = -4.0 DEGREES REMARK 500 DA A 118 C4' - C3' - C2' ANGL. DEV. = -5.8 DEGREES REMARK 500 DA A 118 C3' - C2' - C1' ANGL. DEV. = -7.4 DEGREES REMARK 500 DA A 119 O3' - P - OP1 ANGL. DEV. = 6.7 DEGREES REMARK 500 DA A 119 O5' - P - OP1 ANGL. DEV. = -14.3 DEGREES REMARK 500 DG A 120 O4' - C4' - C3' ANGL. DEV. = -4.6 DEGREES REMARK 500 DG A 120 C3' - C2' - C1' ANGL. DEV. = -5.4 DEGREES REMARK 500 DG A 120 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DT A 122 O5' - P - OP1 ANGL. DEV. = 8.2 DEGREES REMARK 500 DT A 122 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG A 125 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 DT A 127 C3' - C2' - C1' ANGL. DEV. = -5.2 DEGREES REMARK 500 DT A 127 O4' - C1' - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 DC A 130 O4' - C4' - C3' ANGL. DEV. = -5.2 DEGREES REMARK 500 DC A 130 C4' - C3' - C2' ANGL. DEV. = -6.4 DEGREES REMARK 500 DC A 130 C3' - C2' - C1' ANGL. DEV. = -10.8 DEGREES REMARK 500 DT E 101 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DT E 102 OP1 - P - OP2 ANGL. DEV. = -11.1 DEGREES REMARK 500 DT E 102 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 DA E 103 O3' - P - OP2 ANGL. DEV. = 6.8 DEGREES REMARK 500 DA E 103 O4' - C4' - C3' ANGL. DEV. = -2.4 DEGREES REMARK 500 DA E 103 C3' - C2' - C1' ANGL. DEV. = -8.3 DEGREES REMARK 500 DG E 104 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DG E 104 C2 - N3 - C4 ANGL. DEV. = -3.6 DEGREES REMARK 500 DG E 104 N3 - C4 - C5 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 195 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GBI RELATED DB: PDB REMARK 900 UNMODIFIED TRIANGLE DBREF 7U3X A 101 131 PDB 7U3X 7U3X 101 131 DBREF 7U3X E 101 114 PDB 7U3X 7U3X 101 114 DBREF 7U3X D 101 124 PDB 7U3X 7U3X 101 124 DBREF 7U3X B 101 131 PDB 7U3X 7U3X 101 131 DBREF 7U3X F 101 124 PDB 7U3X 7U3X 101 124 DBREF 7U3X C 101 121 PDB 7U3X 7U3X 101 121 DBREF 7U3X M 101 121 PDB 7U3X 7U3X 101 121 SEQRES 1 A 31 DC DA DC DG DA DG DC DC DT DG DA DT DC SEQRES 2 A 31 DG DG DA DC DA DA DG DA DT DC DC DG DC SEQRES 3 A 31 DT DA DG DC DG SEQRES 1 E 14 DT DT DA DG DT DC DG DT DG DG DC DT DC SEQRES 2 E 14 DG SEQRES 1 D 24 DT DG DC DG DC DT DA DG DC DG DG DA DT SEQRES 2 D 24 DC DT DT DG DT DG DG DC DT DG DC SEQRES 1 B 31 DG DA DG DC DA DG DC DC DT DG DT DA DC SEQRES 2 B 31 DG DG DA DC DA DT DC DA DG DT DC DT DA SEQRES 3 B 31 DT DG DC DT DA SEQRES 1 F 24 DT DC DT DA DG DC DA DT DA DG DA DC DT SEQRES 2 F 24 DG DA DT DG DT DG DG DT DA DG DG SEQRES 1 C 21 DA DA DC DC DT DA DC DC DT DG DG DC DA SEQRES 2 C 21 DG DG DA DC DG DA DC DT SEQRES 1 M 21 DT DC DA DC DC DT DG DC DC DA DC DC DG SEQRES 2 M 21 DT DA DC DA DC DC DG DA CRYST1 67.961 100.275 102.065 100.58 100.81 102.39 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014714 0.003234 0.003664 0.00000 SCALE2 0.000000 0.010211 0.002449 0.00000 SCALE3 0.000000 0.000000 0.010258 0.00000