HEADER VIRAL PROTEIN, HYDROLASE 28-FEB-22 7U4F TITLE NEURAMINIDASE FROM INFLUENZA VIRUS A/MOSCOW/10/1999(H3N2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEURAMINIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.18; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (A/MOSCOW/10/1999(H3N2)); SOURCE 3 ORGANISM_TAXID: 480019; SOURCE 4 STRAIN: A/MOSCOW/10/1999(H3N2); SOURCE 5 GENE: NA; SOURCE 6 EXPRESSION_SYSTEM: UNIDENTIFIED BACULOVIRUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10469 KEYWDS NEURAMINIDASE, INFLUENZA, VIRAL PROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.LEI,A.HERNANDEZ GARCIA REVDAT 4 16-OCT-24 7U4F 1 REMARK REVDAT 3 18-OCT-23 7U4F 1 REMARK REVDAT 2 09-NOV-22 7U4F 1 JRNL REVDAT 1 19-OCT-22 7U4F 0 JRNL AUTH R.LEI,T.J.C.TAN,A.HERNANDEZ GARCIA,Y.WANG,M.DIEFENBACHER, JRNL AUTH 2 C.TEO,G.GOPAN,Z.TAVAKOLI DARGANI,Q.W.TEO,C.S.GRAHAM, JRNL AUTH 3 C.B.BROOKE,S.K.NAIR,N.C.WU JRNL TITL PREVALENCE AND MECHANISMS OF EVOLUTIONARY CONTINGENCY IN JRNL TITL 2 HUMAN INFLUENZA H3N2 NEURAMINIDASE. JRNL REF NAT COMMUN V. 13 6443 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 36307418 JRNL DOI 10.1038/S41467-022-34060-8 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 131298 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.165 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6900 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.43 REMARK 3 REFLECTION IN BIN (WORKING SET) : 9576 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE SET COUNT : 500 REMARK 3 BIN FREE R VALUE : 0.2360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2996 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 124 REMARK 3 SOLVENT ATOMS : 581 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.36000 REMARK 3 B22 (A**2) : -0.36000 REMARK 3 B33 (A**2) : 0.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.039 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.040 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.024 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.598 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3276 ; 0.018 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4467 ; 2.048 ; 1.678 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 412 ; 7.623 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 163 ;31.288 ;22.331 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 517 ;12.316 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;13.760 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 447 ; 0.137 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2457 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7U4F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAR-22. REMARK 100 THE DEPOSITION ID IS D_1000263469. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 138645 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.397 REMARK 200 RESOLUTION RANGE LOW (A) : 43.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 23.00 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.40 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.26000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2AEP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M NH4-SULFATE, 0.1 M ACETATE PH REMARK 280 4.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 68.07650 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 68.07650 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 75.38350 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 68.07650 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 68.07650 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 75.38350 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 68.07650 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 68.07650 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 75.38350 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 68.07650 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 68.07650 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 75.38350 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 68.07650 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 68.07650 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 75.38350 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 68.07650 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 68.07650 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 75.38350 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 68.07650 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 68.07650 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 75.38350 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 68.07650 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 68.07650 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 75.38350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 48740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -130.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1089 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 77 REMARK 465 SER A 78 REMARK 465 PRO A 79 REMARK 465 SER A 80 REMARK 465 ARG A 81 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 105 O HOH A 601 1.97 REMARK 500 O HOH A 638 O HOH A 1019 1.98 REMARK 500 O HOH A 714 O HOH A 981 2.01 REMARK 500 OE1 GLU A 162 O HOH A 602 2.03 REMARK 500 O HOH A 928 O HOH A 992 2.03 REMARK 500 O GLY A 248 NE2 HIS A 274 2.09 REMARK 500 O HOH A 1004 O HOH A 1013 2.09 REMARK 500 O HOH A 635 O HOH A 875 2.11 REMARK 500 O HOH A 1030 O HOH A 1117 2.12 REMARK 500 N ALA A 82 O HOH A 603 2.13 REMARK 500 O HOH A 731 O HOH A 989 2.15 REMARK 500 ND2 ASN A 329 O HOH A 604 2.15 REMARK 500 O HOH A 984 O HOH A 1003 2.15 REMARK 500 O HOH A 970 O HOH A 990 2.16 REMARK 500 OD1 ASP A 399 O HOH A 605 2.17 REMARK 500 OG SER A 333 O HOH A 606 2.17 REMARK 500 O HOH A 798 O HOH A 982 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 997 O HOH A 1121 4555 2.02 REMARK 500 O HOH A 885 O HOH A 982 3555 2.10 REMARK 500 O HOH A 1021 O HOH A 1065 3555 2.11 REMARK 500 O HOH A 713 O HOH A 713 4555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 168 CE1 HIS A 168 NE2 -0.071 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 107 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 118 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 LYS A 172 CD - CE - NZ ANGL. DEV. = 15.7 DEGREES REMARK 500 ARG A 288 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 327 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 142 136.22 -170.35 REMARK 500 ASN A 200 62.45 -162.75 REMARK 500 ILE A 222 70.10 62.02 REMARK 500 THR A 225 -157.26 -142.12 REMARK 500 SER A 247 30.75 -148.14 REMARK 500 CYS A 291 -163.73 -126.94 REMARK 500 SER A 315 -153.37 -164.73 REMARK 500 CYS A 337 -29.49 88.81 REMARK 500 HIS A 347 -172.43 72.35 REMARK 500 SER A 404 -138.14 -118.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1159 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH A1160 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A1161 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH A1162 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH A1163 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH A1164 DISTANCE = 6.81 ANGSTROMS REMARK 525 HOH A1165 DISTANCE = 6.93 ANGSTROMS REMARK 525 HOH A1167 DISTANCE = 7.09 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 293 O REMARK 620 2 GLY A 297 O 82.7 REMARK 620 3 ASP A 324 OD2 90.3 90.3 REMARK 620 4 GLY A 345 O 98.1 85.0 169.8 REMARK 620 5 HIS A 347 O 91.9 166.4 102.3 83.4 REMARK 620 6 HOH A 752 O 175.0 92.9 87.4 83.8 92.9 REMARK 620 N 1 2 3 4 5 DBREF 7U4F A 82 469 UNP Q8AZ87 Q8AZ87_9INFA 82 469 SEQADV 7U4F GLY A 77 UNP Q8AZ87 EXPRESSION TAG SEQADV 7U4F SER A 78 UNP Q8AZ87 EXPRESSION TAG SEQADV 7U4F PRO A 79 UNP Q8AZ87 EXPRESSION TAG SEQADV 7U4F SER A 80 UNP Q8AZ87 EXPRESSION TAG SEQADV 7U4F ARG A 81 UNP Q8AZ87 EXPRESSION TAG SEQRES 1 A 393 GLY SER PRO SER ARG ALA GLU TYR ARG ASN TRP SER LYS SEQRES 2 A 393 PRO GLN CYS ASN ILE THR GLY PHE ALA PRO PHE SER LYS SEQRES 3 A 393 ASP ASN SER ILE ARG LEU SER ALA GLY GLY ASP ILE TRP SEQRES 4 A 393 VAL THR ARG GLU PRO TYR VAL SER CYS ASP PRO ASP LYS SEQRES 5 A 393 CYS TYR GLN PHE ALA LEU GLY GLN GLY THR THR LEU ASN SEQRES 6 A 393 ASN GLY HIS SER ASN ASP THR VAL HIS ASP ARG THR PRO SEQRES 7 A 393 TYR ARG THR LEU LEU MET ASN GLU LEU GLY VAL PRO PHE SEQRES 8 A 393 HIS LEU GLY THR LYS GLN VAL CYS ILE ALA TRP SER SER SEQRES 9 A 393 SER SER CYS HIS ASP GLY LYS ALA TRP LEU HIS VAL CYS SEQRES 10 A 393 VAL THR GLY ASP ASP GLU ASN ALA THR ALA SER PHE ILE SEQRES 11 A 393 TYR ASN GLY ARG LEU VAL ASP SER ILE GLY SER TRP SER SEQRES 12 A 393 LYS LYS ILE LEU ARG THR GLN GLU SER GLU CYS VAL CYS SEQRES 13 A 393 ILE ASN GLY THR CYS THR VAL VAL MET THR ASP GLY SER SEQRES 14 A 393 ALA SER GLY LYS ALA ASP THR LYS ILE LEU PHE ILE GLU SEQRES 15 A 393 GLU GLY LYS ILE VAL HIS THR SER PRO LEU SER GLY SER SEQRES 16 A 393 ALA GLN HIS VAL GLU GLU CYS SER CYS TYR PRO ARG TYR SEQRES 17 A 393 PRO GLY VAL ARG CYS VAL CYS ARG ASP ASN TRP LYS GLY SEQRES 18 A 393 SER ASN ARG PRO ILE VAL ASP ILE ASN VAL LYS ASP TYR SEQRES 19 A 393 SER ILE VAL SER SER TYR VAL CYS SER GLY LEU VAL GLY SEQRES 20 A 393 ASP THR PRO ARG LYS ASN ASP SER SER SER SER SER HIS SEQRES 21 A 393 CYS LEU ASP PRO ASN ASN GLU GLU GLY GLY HIS GLY VAL SEQRES 22 A 393 LYS GLY TRP ALA PHE ASP ASP GLY ASN ASP VAL TRP MET SEQRES 23 A 393 GLY ARG THR ILE SER GLU LYS LEU ARG SER GLY TYR GLU SEQRES 24 A 393 THR PHE LYS VAL ILE GLU GLY TRP SER LYS PRO ASN SER SEQRES 25 A 393 LYS LEU GLN ILE ASN ARG GLN VAL ILE VAL ASP ARG GLY SEQRES 26 A 393 ASN ARG SER GLY TYR SER GLY ILE PHE SER VAL GLU GLY SEQRES 27 A 393 LYS SER CYS ILE ASN ARG CYS PHE TYR VAL GLU LEU ILE SEQRES 28 A 393 ARG GLY ARG LYS GLN GLU THR GLU VAL LEU TRP THR SER SEQRES 29 A 393 ASN SER ILE VAL VAL PHE CYS GLY THR SER GLY THR TYR SEQRES 30 A 393 GLY THR GLY SER TRP PRO ASP GLY ALA ASP ILE ASN LEU SEQRES 31 A 393 MET PRO ILE HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET MAN B 4 11 HET MAN B 5 11 HET MAN B 6 11 HET MAN B 7 11 HET NAG C 1 14 HET BMA C 2 11 HET CA A 501 1 HET SO4 A 502 5 HET SO4 A 503 5 HET SO4 A 504 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CA CALCIUM ION HETNAM SO4 SULFATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 2 BMA 2(C6 H12 O6) FORMUL 2 MAN 4(C6 H12 O6) FORMUL 4 CA CA 2+ FORMUL 5 SO4 3(O4 S 2-) FORMUL 8 HOH *581(H2 O) HELIX 1 AA1 ASN A 104 ALA A 110 1 7 HELIX 2 AA2 ASN A 142 ASN A 146 5 5 HELIX 3 AA3 ASP A 463 MET A 467 5 5 SHEET 1 AA1 4 GLY A 96 LYS A 102 0 SHEET 2 AA1 4 THR A 439 THR A 449 -1 O CYS A 447 N ALA A 98 SHEET 3 AA1 4 ILE A 418 GLY A 429 -1 N LEU A 426 O SER A 442 SHEET 4 AA1 4 SER A 407 GLU A 413 -1 N PHE A 410 O CYS A 421 SHEET 1 AA2 4 TRP A 115 CYS A 124 0 SHEET 2 AA2 4 CYS A 129 THR A 139 -1 O PHE A 132 N TYR A 121 SHEET 3 AA2 4 THR A 157 GLU A 162 -1 O LEU A 159 N ALA A 133 SHEET 4 AA2 4 LYS A 172 ILE A 176 -1 O VAL A 174 N LEU A 158 SHEET 1 AA3 4 SER A 179 HIS A 184 0 SHEET 2 AA3 4 TRP A 189 ASP A 197 -1 O LEU A 190 N CYS A 183 SHEET 3 AA3 4 ASN A 200 TYR A 207 -1 O SER A 204 N CYS A 193 SHEET 4 AA3 4 ARG A 210 GLY A 216 -1 O VAL A 212 N PHE A 205 SHEET 1 AA4 4 VAL A 231 ILE A 233 0 SHEET 2 AA4 4 THR A 236 GLY A 244 -1 O THR A 238 N VAL A 231 SHEET 3 AA4 4 ALA A 250 GLU A 258 -1 O ILE A 257 N CYS A 237 SHEET 4 AA4 4 LYS A 261 PRO A 267 -1 O SER A 266 N ILE A 254 SHEET 1 AA5 4 GLU A 276 ARG A 283 0 SHEET 2 AA5 4 GLY A 286 ARG A 292 -1 O GLY A 286 N ARG A 283 SHEET 3 AA5 4 PRO A 301 ILE A 305 -1 O ILE A 305 N VAL A 287 SHEET 4 AA5 4 ILE A 312 TYR A 316 -1 O VAL A 313 N ASP A 304 SHEET 1 AA6 4 ALA A 353 ASP A 356 0 SHEET 2 AA6 4 ASP A 359 ARG A 364 -1 O TRP A 361 N PHE A 354 SHEET 3 AA6 4 SER A 372 VAL A 379 -1 O VAL A 379 N VAL A 360 SHEET 4 AA6 4 GLN A 391 ARG A 403 -1 O ASN A 402 N GLY A 373 SSBOND 1 CYS A 92 CYS A 417 1555 1555 2.16 SSBOND 2 CYS A 124 CYS A 129 1555 1555 2.07 SSBOND 3 CYS A 175 CYS A 193 1555 1555 2.03 SSBOND 4 CYS A 183 CYS A 230 1555 1555 2.05 SSBOND 5 CYS A 232 CYS A 237 1555 1555 2.16 SSBOND 6 CYS A 278 CYS A 291 1555 1555 2.26 SSBOND 7 CYS A 280 CYS A 289 1555 1555 2.07 SSBOND 8 CYS A 318 CYS A 337 1555 1555 2.13 SSBOND 9 CYS A 421 CYS A 447 1555 1555 2.22 LINK ND2 ASN A 146 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN A 200 C1 NAG B 1 1555 1555 1.49 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.40 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.45 LINK O3 BMA B 3 C1 MAN B 4 1555 1555 1.41 LINK O6 BMA B 3 C1 MAN B 6 1555 1555 1.48 LINK O2 MAN B 4 C1 MAN B 5 1555 1555 1.46 LINK O3 MAN B 6 C1 MAN B 7 1555 1555 1.44 LINK O4 NAG C 1 C1 BMA C 2 1555 1555 1.47 LINK O ASP A 293 CA CA A 501 1555 1555 2.31 LINK O GLY A 297 CA CA A 501 1555 1555 2.39 LINK OD2 ASP A 324 CA CA A 501 1555 1555 2.38 LINK O GLY A 345 CA CA A 501 1555 1555 2.37 LINK O HIS A 347 CA CA A 501 1555 1555 2.30 LINK CA CA A 501 O HOH A 752 1555 1555 2.39 CISPEP 1 TYR A 284 PRO A 285 0 11.08 CISPEP 2 THR A 325 PRO A 326 0 8.73 CISPEP 3 ARG A 430 LYS A 431 0 6.29 CRYST1 136.153 136.153 150.767 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007345 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007345 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006633 0.00000