HEADER TOXIN, TRANSFERASE 06-MAR-22 7U6Z TITLE PERTUSSIS TOXIN E129D NAD COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERTUSSIS TOXIN SUBUNIT 1; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: PTX S1,ISLET-ACTIVATING PROTEIN S1,IAP S1,NAD-DEPENDENT ADP- COMPND 5 RIBOSYLTRANSFERASE; COMPND 6 EC: 2.4.2.-, 2.4.2.30; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BORDETELLA PERTUSSIS; SOURCE 3 ORGANISM_TAXID: 520; SOURCE 4 GENE: PTXA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS TOXIN, ADP-RIBOSYLTRANSFERASE, TRANSFERASE, WHOOPING COUGH, KEYWDS 2 INHIBITOR, PERTUSSIS EXPDTA X-RAY DIFFRACTION AUTHOR D.R.LITTLER,T.BEDDOE,A.PULLIAINEN,J.ROSSJOHN REVDAT 4 18-OCT-23 7U6Z 1 REMARK REVDAT 3 18-MAY-22 7U6Z 1 JRNL REVDAT 2 20-APR-22 7U6Z 1 JRNL REVDAT 1 13-APR-22 7U6Z 0 JRNL AUTH M.SAKARI,M.T.TRAN,J.ROSSJOHN,A.T.PULLIAINEN,T.BEDDOE, JRNL AUTH 2 D.R.LITTLER JRNL TITL CRYSTAL STRUCTURES OF PERTUSSIS TOXIN WITH NAD + AND ANALOGS JRNL TITL 2 PROVIDE STRUCTURAL INSIGHTS INTO THE MECHANISM OF ITS JRNL TITL 3 CYTOSOLIC ADP-RIBOSYLATION ACTIVITY. JRNL REF J.BIOL.CHEM. V. 298 01892 2022 JRNL REFN ESSN 1083-351X JRNL PMID 35378130 JRNL DOI 10.1016/J.JBC.2022.101892 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.337 REMARK 3 COMPLETENESS FOR RANGE (%) : 76.2 REMARK 3 NUMBER OF REFLECTIONS : 64066 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.101 REMARK 3 FREE R VALUE TEST SET COUNT : 3268 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.4400 - 3.6930 0.85 3059 175 0.1957 0.2140 REMARK 3 2 3.6930 - 2.9328 0.94 3211 153 0.1909 0.1941 REMARK 3 3 2.9328 - 2.5626 0.94 3272 196 0.1988 0.2324 REMARK 3 4 2.5626 - 2.3285 1.00 3469 203 0.1989 0.2374 REMARK 3 5 2.3285 - 2.1617 0.86 2943 169 0.1937 0.2075 REMARK 3 6 2.1617 - 2.0343 0.86 2969 175 0.1903 0.2085 REMARK 3 7 2.0343 - 1.9325 0.84 2882 150 0.1875 0.2033 REMARK 3 8 1.9325 - 1.8484 0.78 2206 101 0.1933 0.2339 REMARK 3 9 1.8484 - 1.7772 0.99 3485 142 0.1848 0.2158 REMARK 3 10 1.7772 - 1.7159 0.99 3438 173 0.1897 0.1892 REMARK 3 11 1.7159 - 1.6623 1.00 3447 172 0.1838 0.1758 REMARK 3 12 1.6623 - 1.6148 1.00 3440 224 0.1744 0.2113 REMARK 3 13 1.6148 - 1.5723 0.99 3387 198 0.1817 0.2160 REMARK 3 14 1.5723 - 1.5339 1.00 3408 206 0.1865 0.2106 REMARK 3 15 1.5339 - 1.4991 0.92 2318 129 0.1990 0.2171 REMARK 3 16 1.4991 - 1.4672 0.59 2093 83 0.2058 0.2008 REMARK 3 17 1.4672 - 1.4378 0.52 1811 83 0.2130 0.2426 REMARK 3 18 1.4378 - 1.4107 0.66 2322 110 0.2094 0.2458 REMARK 3 19 1.4107 - 1.3855 0.58 1974 108 0.2032 0.2206 REMARK 3 20 1.3855 - 1.3620 0.50 1728 99 0.2438 0.2690 REMARK 3 21 1.3620 - 1.3400 0.44 1495 91 0.2144 0.2244 REMARK 3 22 1.3400 - 1.3194 0.39 1337 73 0.2084 0.2005 REMARK 3 23 1.3194 - 1.3000 0.32 1104 55 0.2146 0.2236 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.115 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.333 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.16 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2872 REMARK 3 ANGLE : 1.133 3922 REMARK 3 CHIRALITY : 0.080 398 REMARK 3 PLANARITY : 0.006 518 REMARK 3 DIHEDRAL : 24.802 1010 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.5024 -4.4195 -21.3996 REMARK 3 T TENSOR REMARK 3 T11: 0.0583 T22: 0.0615 REMARK 3 T33: 0.0608 T12: -0.0013 REMARK 3 T13: 0.0027 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 1.1639 L22: 1.7106 REMARK 3 L33: 1.6678 L12: -0.0983 REMARK 3 L13: 0.3432 L23: -0.2306 REMARK 3 S TENSOR REMARK 3 S11: 0.0189 S12: 0.0333 S13: -0.0883 REMARK 3 S21: -0.0261 S22: -0.0233 S23: -0.1139 REMARK 3 S31: 0.1490 S32: 0.0414 S33: 0.0061 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 57 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.0466 3.1109 -30.6394 REMARK 3 T TENSOR REMARK 3 T11: 0.0712 T22: 0.1218 REMARK 3 T33: 0.0701 T12: 0.0170 REMARK 3 T13: 0.0122 T23: 0.0272 REMARK 3 L TENSOR REMARK 3 L11: 2.6837 L22: 0.9738 REMARK 3 L33: 2.2209 L12: 0.0660 REMARK 3 L13: -1.1006 L23: -0.2688 REMARK 3 S TENSOR REMARK 3 S11: -0.0150 S12: 0.2398 S13: 0.0419 REMARK 3 S21: -0.1470 S22: -0.0535 S23: -0.1768 REMARK 3 S31: 0.0753 S32: 0.2492 S33: 0.0198 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 97 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.5762 -3.8973 -9.8198 REMARK 3 T TENSOR REMARK 3 T11: 0.1066 T22: 0.0789 REMARK 3 T33: 0.0719 T12: 0.0072 REMARK 3 T13: -0.0233 T23: 0.0141 REMARK 3 L TENSOR REMARK 3 L11: 1.5478 L22: 0.8357 REMARK 3 L33: 2.4544 L12: -0.7694 REMARK 3 L13: 1.3996 L23: -0.4208 REMARK 3 S TENSOR REMARK 3 S11: -0.0867 S12: -0.1018 S13: -0.0116 REMARK 3 S21: 0.2051 S22: 0.0451 S23: -0.1287 REMARK 3 S31: 0.0193 S32: 0.0894 S33: 0.0439 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 138 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.4776 6.1890 -30.9201 REMARK 3 T TENSOR REMARK 3 T11: 0.0647 T22: 0.1113 REMARK 3 T33: 0.0589 T12: -0.0077 REMARK 3 T13: -0.0225 T23: 0.0366 REMARK 3 L TENSOR REMARK 3 L11: 3.8556 L22: 0.7195 REMARK 3 L33: 4.1727 L12: 0.4358 REMARK 3 L13: -3.8160 L23: -0.3777 REMARK 3 S TENSOR REMARK 3 S11: 0.0265 S12: 0.2547 S13: 0.1748 REMARK 3 S21: -0.0733 S22: -0.0294 S23: 0.0098 REMARK 3 S31: -0.1692 S32: -0.0616 S33: -0.0006 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 150 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.7708 9.9229 -40.3704 REMARK 3 T TENSOR REMARK 3 T11: 0.1649 T22: 0.2996 REMARK 3 T33: 0.1789 T12: 0.0080 REMARK 3 T13: 0.0325 T23: 0.0966 REMARK 3 L TENSOR REMARK 3 L11: 4.5669 L22: 0.9085 REMARK 3 L33: 3.3067 L12: -1.0068 REMARK 3 L13: -3.6601 L23: 1.3163 REMARK 3 S TENSOR REMARK 3 S11: 0.2657 S12: 0.3491 S13: 0.5455 REMARK 3 S21: -0.2545 S22: 0.0280 S23: -0.2031 REMARK 3 S31: -0.3206 S32: 0.2103 S33: -0.3015 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 163 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.3224 2.8198 -14.4337 REMARK 3 T TENSOR REMARK 3 T11: 0.0905 T22: 0.0981 REMARK 3 T33: 0.0752 T12: -0.0092 REMARK 3 T13: 0.0106 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 1.7397 L22: 1.8121 REMARK 3 L33: 1.8747 L12: -0.9267 REMARK 3 L13: 0.9701 L23: -1.0479 REMARK 3 S TENSOR REMARK 3 S11: -0.0694 S12: -0.1326 S13: -0.0464 REMARK 3 S21: 0.2015 S22: 0.0730 S23: 0.0992 REMARK 3 S31: -0.0646 S32: -0.1847 S33: -0.0176 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): -56.2310 -11.2517 -8.9224 REMARK 3 T TENSOR REMARK 3 T11: 0.0481 T22: 0.1212 REMARK 3 T33: 0.0878 T12: -0.0226 REMARK 3 T13: 0.0178 T23: -0.0148 REMARK 3 L TENSOR REMARK 3 L11: 0.6873 L22: 1.5148 REMARK 3 L33: 1.2080 L12: -0.6601 REMARK 3 L13: -0.0901 L23: 0.2082 REMARK 3 S TENSOR REMARK 3 S11: 0.0291 S12: -0.0836 S13: -0.0930 REMARK 3 S21: 0.0167 S22: -0.0323 S23: 0.0670 REMARK 3 S31: 0.0416 S32: -0.1898 S33: 0.0047 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 37 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): -53.5128 -15.9015 -15.1828 REMARK 3 T TENSOR REMARK 3 T11: 0.0738 T22: 0.0911 REMARK 3 T33: 0.1045 T12: -0.0057 REMARK 3 T13: 0.0055 T23: -0.0251 REMARK 3 L TENSOR REMARK 3 L11: 1.7366 L22: 3.4827 REMARK 3 L33: 1.4312 L12: 0.9969 REMARK 3 L13: -0.0703 L23: -0.6048 REMARK 3 S TENSOR REMARK 3 S11: -0.0198 S12: 0.2004 S13: -0.1316 REMARK 3 S21: -0.1109 S22: -0.0320 S23: 0.1125 REMARK 3 S31: 0.1680 S32: -0.0784 S33: 0.0478 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 57 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): -64.1920 -4.0375 -23.6544 REMARK 3 T TENSOR REMARK 3 T11: 0.1249 T22: 0.1932 REMARK 3 T33: 0.1491 T12: 0.0549 REMARK 3 T13: 0.0167 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 6.0335 L22: 1.1654 REMARK 3 L33: 3.6947 L12: 1.1948 REMARK 3 L13: 3.8516 L23: 0.4763 REMARK 3 S TENSOR REMARK 3 S11: -0.0787 S12: 0.4035 S13: 0.1579 REMARK 3 S21: -0.0691 S22: 0.0167 S23: 0.2139 REMARK 3 S31: -0.2306 S32: -0.0775 S33: 0.0444 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -75.3976 -10.7919 -27.0609 REMARK 3 T TENSOR REMARK 3 T11: 0.2777 T22: 0.5248 REMARK 3 T33: 0.3726 T12: 0.0684 REMARK 3 T13: -0.1637 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 2.9269 L22: 2.4580 REMARK 3 L33: 4.1055 L12: 0.5071 REMARK 3 L13: 1.2036 L23: -0.2609 REMARK 3 S TENSOR REMARK 3 S11: -0.1973 S12: -0.2559 S13: -0.0597 REMARK 3 S21: 0.2605 S22: -0.0837 S23: -0.0210 REMARK 3 S31: 0.1359 S32: -0.2158 S33: 0.2313 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): -58.6612 -4.7814 -7.5276 REMARK 3 T TENSOR REMARK 3 T11: 0.0695 T22: 0.1131 REMARK 3 T33: 0.0855 T12: 0.0035 REMARK 3 T13: 0.0202 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 1.7503 L22: 1.0111 REMARK 3 L33: 1.9508 L12: 0.0152 REMARK 3 L13: 0.4836 L23: 0.0395 REMARK 3 S TENSOR REMARK 3 S11: -0.0197 S12: -0.0871 S13: 0.1103 REMARK 3 S21: 0.0497 S22: -0.0405 S23: 0.1209 REMARK 3 S31: -0.1077 S32: -0.2206 S33: 0.0472 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.4386 -13.8127 -14.2362 REMARK 3 T TENSOR REMARK 3 T11: 0.0655 T22: 0.0795 REMARK 3 T33: 0.1043 T12: 0.0038 REMARK 3 T13: -0.0059 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 2.2581 L22: 2.9264 REMARK 3 L33: 2.1828 L12: -1.9857 REMARK 3 L13: -2.0573 L23: 2.1914 REMARK 3 S TENSOR REMARK 3 S11: 0.0256 S12: 0.0572 S13: -0.0301 REMARK 3 S21: -0.0226 S22: 0.0122 S23: -0.1710 REMARK 3 S31: 0.1024 S32: 0.0031 S33: -0.0405 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 112 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): -48.0934 -12.0733 -11.4079 REMARK 3 T TENSOR REMARK 3 T11: 0.0909 T22: 0.0960 REMARK 3 T33: 0.1102 T12: -0.0100 REMARK 3 T13: 0.0049 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 1.9337 L22: 2.1710 REMARK 3 L33: 1.6811 L12: -1.6867 REMARK 3 L13: -0.8471 L23: 1.4159 REMARK 3 S TENSOR REMARK 3 S11: 0.0674 S12: 0.0987 S13: 0.0527 REMARK 3 S21: -0.1547 S22: -0.0473 S23: -0.0478 REMARK 3 S31: -0.0715 S32: -0.0015 S33: -0.0117 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): -65.0043 -2.0201 -7.5340 REMARK 3 T TENSOR REMARK 3 T11: 0.1096 T22: 0.2850 REMARK 3 T33: 0.1561 T12: 0.0596 REMARK 3 T13: 0.0279 T23: -0.0399 REMARK 3 L TENSOR REMARK 3 L11: 3.7721 L22: 0.6422 REMARK 3 L33: 3.4682 L12: -0.4050 REMARK 3 L13: 3.5624 L23: -0.6245 REMARK 3 S TENSOR REMARK 3 S11: 0.0605 S12: -0.0370 S13: 0.0778 REMARK 3 S21: -0.0182 S22: -0.0422 S23: 0.2081 REMARK 3 S31: -0.2197 S32: -0.5217 S33: -0.0227 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): -73.9184 1.6784 -15.8158 REMARK 3 T TENSOR REMARK 3 T11: 0.3256 T22: 0.6211 REMARK 3 T33: 0.3146 T12: 0.3233 REMARK 3 T13: -0.1316 T23: -0.1277 REMARK 3 L TENSOR REMARK 3 L11: 1.3297 L22: 0.8470 REMARK 3 L33: 2.9324 L12: 0.7573 REMARK 3 L13: 1.5000 L23: 0.1375 REMARK 3 S TENSOR REMARK 3 S11: 0.0533 S12: 0.1777 S13: 0.0155 REMARK 3 S21: -0.1105 S22: 0.1489 S23: 0.3221 REMARK 3 S31: -0.1783 S32: -0.2022 S33: 0.0760 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 163 THROUGH 172 ) REMARK 3 ORIGIN FOR THE GROUP (A): -55.0413 -1.3001 3.7277 REMARK 3 T TENSOR REMARK 3 T11: 0.1753 T22: 0.2510 REMARK 3 T33: 0.1248 T12: -0.0283 REMARK 3 T13: 0.0329 T23: -0.0736 REMARK 3 L TENSOR REMARK 3 L11: 7.1159 L22: 1.7299 REMARK 3 L33: 1.9240 L12: -0.3119 REMARK 3 L13: 0.1542 L23: 0.2602 REMARK 3 S TENSOR REMARK 3 S11: -0.0986 S12: -0.3493 S13: 0.0014 REMARK 3 S21: 0.3815 S22: 0.0524 S23: 0.1064 REMARK 3 S31: -0.0282 S32: -0.0852 S33: 0.0253 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 173 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.3505 -11.7764 -6.0908 REMARK 3 T TENSOR REMARK 3 T11: 0.0898 T22: 0.1290 REMARK 3 T33: 0.1602 T12: -0.0058 REMARK 3 T13: -0.0169 T23: 0.0282 REMARK 3 L TENSOR REMARK 3 L11: 4.5868 L22: 1.7578 REMARK 3 L33: 2.6101 L12: 1.5640 REMARK 3 L13: -0.3858 L23: 0.6542 REMARK 3 S TENSOR REMARK 3 S11: 0.1483 S12: -0.1577 S13: -0.3400 REMARK 3 S21: 0.0298 S22: -0.0498 S23: -0.7217 REMARK 3 S31: 0.1181 S32: 0.2142 S33: -0.1008 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7U6Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAR-22. REMARK 100 THE DEPOSITION ID IS D_1000263623. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953700 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64240 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 76.3 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.37 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1BCP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M KI, 25% PEG3350, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 17.28000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B -1 REMARK 465 PRO B 0 REMARK 465 ASP B 113 REMARK 465 ASN B 114 REMARK 465 ALA B 115 REMARK 465 GLY B 116 REMARK 465 ARG B 117 REMARK 465 ILE B 118 REMARK 465 LEU B 119 REMARK 465 ALA B 120 REMARK 465 GLY B 121 REMARK 465 ALA B 122 REMARK 465 LEU B 123 REMARK 465 ALA B 124 REMARK 465 THR B 125 REMARK 465 ARG B 181 REMARK 465 ARG B 182 REMARK 465 GLY A -1 REMARK 465 PRO A 0 REMARK 465 ALA A 115 REMARK 465 GLY A 116 REMARK 465 ARG A 117 REMARK 465 ILE A 118 REMARK 465 LEU A 119 REMARK 465 ALA A 120 REMARK 465 GLY A 121 REMARK 465 ALA A 122 REMARK 465 LEU A 123 REMARK 465 ALA A 124 REMARK 465 THR A 125 REMARK 465 ARG A 181 REMARK 465 ARG A 182 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 143 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 143 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 134 -52.86 75.25 REMARK 500 ARG A 134 -38.89 63.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 457 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH B 458 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH B 459 DISTANCE = 6.77 ANGSTROMS REMARK 525 HOH B 460 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH B 461 DISTANCE = 6.83 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7SKY RELATED DB: PDB REMARK 900 S1 NAD REMARK 900 RELATED ID: 7SKK RELATED DB: PDB REMARK 900 S1 ADPR / NA REMARK 900 RELATED ID: 7SNE RELATED DB: PDB REMARK 900 S1 BAAD REMARK 900 RELATED ID: 7SKI RELATED DB: PDB REMARK 900 S1 PJ34 DBREF 7U6Z B 2 182 UNP P04977 TOX1_BORPE 36 216 DBREF 7U6Z A 2 182 UNP P04977 TOX1_BORPE 36 216 SEQADV 7U6Z GLY B -1 UNP P04977 EXPRESSION TAG SEQADV 7U6Z PRO B 0 UNP P04977 EXPRESSION TAG SEQADV 7U6Z GLY B 1 UNP P04977 EXPRESSION TAG SEQADV 7U6Z GLU B 34 UNP P04977 ASP 68 VARIANT SEQADV 7U6Z ASP B 129 UNP P04977 GLU 163 ENGINEERED MUTATION SEQADV 7U6Z GLY A -1 UNP P04977 EXPRESSION TAG SEQADV 7U6Z PRO A 0 UNP P04977 EXPRESSION TAG SEQADV 7U6Z GLY A 1 UNP P04977 EXPRESSION TAG SEQADV 7U6Z GLU A 34 UNP P04977 ASP 68 VARIANT SEQADV 7U6Z ASP A 129 UNP P04977 GLU 163 ENGINEERED MUTATION SEQRES 1 B 184 GLY PRO GLY ASP PRO PRO ALA THR VAL TYR ARG TYR ASP SEQRES 2 B 184 SER ARG PRO PRO GLU ASP VAL PHE GLN ASN GLY PHE THR SEQRES 3 B 184 ALA TRP GLY ASN ASN ASP ASN VAL LEU GLU HIS LEU THR SEQRES 4 B 184 GLY ARG SER CYS GLN VAL GLY SER SER ASN SER ALA PHE SEQRES 5 B 184 VAL SER THR SER SER SER ARG ARG TYR THR GLU VAL TYR SEQRES 6 B 184 LEU GLU HIS ARG MET GLN GLU ALA VAL GLU ALA GLU ARG SEQRES 7 B 184 ALA GLY ARG GLY THR GLY HIS PHE ILE GLY TYR ILE TYR SEQRES 8 B 184 GLU VAL ARG ALA ASP ASN ASN PHE TYR GLY ALA ALA SER SEQRES 9 B 184 SER TYR PHE GLU TYR VAL ASP THR TYR GLY ASP ASN ALA SEQRES 10 B 184 GLY ARG ILE LEU ALA GLY ALA LEU ALA THR TYR GLN SER SEQRES 11 B 184 ASP TYR LEU ALA HIS ARG ARG ILE PRO PRO GLU ASN ILE SEQRES 12 B 184 ARG ARG VAL THR ARG VAL TYR HIS ASN GLY ILE THR GLY SEQRES 13 B 184 GLU THR THR THR THR GLU TYR SER ASN ALA ARG TYR VAL SEQRES 14 B 184 SER GLN GLN THR ARG ALA ASN PRO ASN PRO TYR THR SER SEQRES 15 B 184 ARG ARG SEQRES 1 A 184 GLY PRO GLY ASP PRO PRO ALA THR VAL TYR ARG TYR ASP SEQRES 2 A 184 SER ARG PRO PRO GLU ASP VAL PHE GLN ASN GLY PHE THR SEQRES 3 A 184 ALA TRP GLY ASN ASN ASP ASN VAL LEU GLU HIS LEU THR SEQRES 4 A 184 GLY ARG SER CYS GLN VAL GLY SER SER ASN SER ALA PHE SEQRES 5 A 184 VAL SER THR SER SER SER ARG ARG TYR THR GLU VAL TYR SEQRES 6 A 184 LEU GLU HIS ARG MET GLN GLU ALA VAL GLU ALA GLU ARG SEQRES 7 A 184 ALA GLY ARG GLY THR GLY HIS PHE ILE GLY TYR ILE TYR SEQRES 8 A 184 GLU VAL ARG ALA ASP ASN ASN PHE TYR GLY ALA ALA SER SEQRES 9 A 184 SER TYR PHE GLU TYR VAL ASP THR TYR GLY ASP ASN ALA SEQRES 10 A 184 GLY ARG ILE LEU ALA GLY ALA LEU ALA THR TYR GLN SER SEQRES 11 A 184 ASP TYR LEU ALA HIS ARG ARG ILE PRO PRO GLU ASN ILE SEQRES 12 A 184 ARG ARG VAL THR ARG VAL TYR HIS ASN GLY ILE THR GLY SEQRES 13 A 184 GLU THR THR THR THR GLU TYR SER ASN ALA ARG TYR VAL SEQRES 14 A 184 SER GLN GLN THR ARG ALA ASN PRO ASN PRO TYR THR SER SEQRES 15 A 184 ARG ARG HET IOD B 201 1 HET NAD B 202 44 HET IOD A 201 1 HET NAD A 202 44 HETNAM IOD IODIDE ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 3 IOD 2(I 1-) FORMUL 4 NAD 2(C21 H27 N7 O14 P2) FORMUL 7 HOH *286(H2 O) HELIX 1 AA1 PRO B 14 GLY B 22 1 9 HELIX 2 AA2 ASN B 31 THR B 37 1 7 HELIX 3 AA3 SER B 56 ALA B 77 1 22 HELIX 4 AA4 ALA B 100 GLY B 112 1 13 HELIX 5 AA5 PRO B 137 GLU B 139 5 3 HELIX 6 AA6 PRO A 14 GLY A 22 1 9 HELIX 7 AA7 ASN A 31 THR A 37 1 7 HELIX 8 AA8 SER A 56 ALA A 77 1 22 HELIX 9 AA9 ALA A 100 GLY A 112 1 13 HELIX 10 AB1 PRO A 137 GLU A 139 5 3 SHEET 1 AA1 4 THR B 6 ASP B 11 0 SHEET 2 AA1 4 PHE B 84 ARG B 92 -1 O VAL B 91 N VAL B 7 SHEET 3 AA1 4 ILE B 141 HIS B 149 -1 O HIS B 149 N PHE B 84 SHEET 4 AA1 4 THR B 156 SER B 162 -1 O THR B 159 N ARG B 146 SHEET 1 AA2 2 PHE B 23 THR B 24 0 SHEET 2 AA2 2 ARG B 135 ILE B 136 -1 O ILE B 136 N PHE B 23 SHEET 1 AA3 3 PHE B 50 SER B 54 0 SHEET 2 AA3 3 ASP B 129 HIS B 133 -1 O ALA B 132 N VAL B 51 SHEET 3 AA3 3 PHE B 97 GLY B 99 -1 N TYR B 98 O LEU B 131 SHEET 1 AA4 4 THR A 6 ASP A 11 0 SHEET 2 AA4 4 PHE A 84 ARG A 92 -1 O VAL A 91 N VAL A 7 SHEET 3 AA4 4 ILE A 141 HIS A 149 -1 O HIS A 149 N PHE A 84 SHEET 4 AA4 4 THR A 156 SER A 162 -1 O THR A 159 N ARG A 146 SHEET 1 AA5 2 PHE A 23 THR A 24 0 SHEET 2 AA5 2 ARG A 135 ILE A 136 -1 O ILE A 136 N PHE A 23 SHEET 1 AA6 3 PHE A 50 SER A 54 0 SHEET 2 AA6 3 ASP A 129 HIS A 133 -1 O ALA A 132 N VAL A 51 SHEET 3 AA6 3 PHE A 97 GLY A 99 -1 N TYR A 98 O LEU A 131 CRYST1 69.190 34.560 71.760 90.00 90.00 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014453 0.000000 0.000000 0.00000 SCALE2 0.000000 0.028935 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013935 0.00000