data_7U87 # _entry.id 7U87 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.390 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7U87 pdb_00007u87 10.2210/pdb7u87/pdb WWPDB D_1000263607 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-03-15 2 'Structure model' 1 1 2023-10-25 3 'Structure model' 1 2 2024-04-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Refinement description' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' pdbx_initial_refinement_model 4 3 'Structure model' citation 5 3 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_citation.country' 2 3 'Structure model' '_citation.journal_abbrev' 3 3 'Structure model' '_citation.journal_id_ASTM' 4 3 'Structure model' '_citation.journal_id_CSD' 5 3 'Structure model' '_citation.journal_id_ISSN' 6 3 'Structure model' '_citation.pdbx_database_id_DOI' 7 3 'Structure model' '_citation.pdbx_database_id_PubMed' 8 3 'Structure model' '_citation.title' 9 3 'Structure model' '_citation.year' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7U87 _pdbx_database_status.recvd_initial_deposition_date 2022-03-08 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email szostak@molbio.mgh.harvard.edu _pdbx_contact_author.name_first Jack _pdbx_contact_author.name_last Szostak _pdbx_contact_author.name_mi W _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4131-1203 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Fang, Z.' 1 0000-0001-8679-6633 'Szostak, J.W.' 2 0000-0003-4131-1203 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_id_ASTM JACSAT _citation.journal_id_CSD ? _citation.journal_id_ISSN 1520-5126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Catalytic Metal Ion-Substrate Coordination during Nonenzymatic RNA Primer Extension.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/jacs.4c00323 _citation.pdbx_database_id_PubMed 38579124 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fang, Z.' 1 0000-0001-8679-6633 primary 'Pazienza, L.T.' 2 ? primary 'Zhang, J.' 3 ? primary 'Tam, C.P.' 4 ? primary 'Szostak, J.W.' 5 0000-0003-4131-1203 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*(G46)P*(G46))-3') ; 4890.140 2 ? ? ? ? 2 non-polymer syn "5'-O-[(R)-(2-amino-1H-imidazol-1-yl)(sulfanyl)phosphoryl]guanosine" 444.363 2 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 3 ? ? ? ? 4 water nat water 18.015 107 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(LCC)(LCC)(LCC)(LCG)ACUUAAGUC(G46)(G46)' _entity_poly.pdbx_seq_one_letter_code_can NNNGACUUAAGUCGG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "5'-O-[(R)-(2-amino-1H-imidazol-1-yl)(sulfanyl)phosphoryl]guanosine" LXI 3 'MAGNESIUM ION' MG 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LCC n 1 2 LCC n 1 3 LCC n 1 4 LCG n 1 5 A n 1 6 C n 1 7 U n 1 8 U n 1 9 A n 1 10 A n 1 11 G n 1 12 U n 1 13 C n 1 14 G46 n 1 15 G46 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 15 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 G46 'RNA linking' n "GUANOSINE-5'-MONOTHIOPHOSPHATE" "5'-O-thiophosphonoguanosine" 'C10 H14 N5 O7 P S' 379.286 HOH non-polymer . WATER ? 'H2 O' 18.015 LCC 'RNA linking' . '[(1R,3R,4R,7S)-7-HYDROXY-3-(5-METHYLCYTOSIN-1-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H16 N3 O8 P' 349.234 LCG 'RNA linking' n '[(1R,3R,4R,7S)-7-HYDROXY-3-(GUANIN-9-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H14 N5 O8 P' 375.231 LXI non-polymer . "5'-O-[(R)-(2-amino-1H-imidazol-1-yl)(sulfanyl)phosphoryl]guanosine" ? 'C13 H17 N8 O6 P S' 444.363 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LCC 1 1 1 LCC LCC A . n A 1 2 LCC 2 2 2 LCC LCC A . n A 1 3 LCC 3 3 3 LCC LCC A . n A 1 4 LCG 4 4 4 LCG LCG A . n A 1 5 A 5 5 5 A A A . n A 1 6 C 6 6 6 C C A . n A 1 7 U 7 7 7 U U A . n A 1 8 U 8 8 8 U U A . n A 1 9 A 9 9 9 A A A . n A 1 10 A 10 10 10 A A A . n A 1 11 G 11 11 11 G G A . n A 1 12 U 12 12 12 U U A . n A 1 13 C 13 13 13 C C A . n A 1 14 G46 14 14 14 G46 1SG A . n A 1 15 G46 15 15 15 G46 1SG A . n B 1 1 LCC 1 1 1 LCC LCC B . n B 1 2 LCC 2 2 2 LCC LCC B . n B 1 3 LCC 3 3 3 LCC LCC B . n B 1 4 LCG 4 4 4 LCG LCG B . n B 1 5 A 5 5 5 A A B . n B 1 6 C 6 6 6 C C B . n B 1 7 U 7 7 7 U U B . n B 1 8 U 8 8 8 U U B . n B 1 9 A 9 9 9 A A B . n B 1 10 A 10 10 10 A A B . n B 1 11 G 11 11 11 G G B . n B 1 12 U 12 12 12 U U B . n B 1 13 C 13 13 13 C C B . n B 1 14 G46 14 14 14 G46 1SG B . n B 1 15 G46 15 15 15 G46 1SG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LXI 1 101 16 LXI SPG A . D 3 MG 1 102 2 MG MG A . E 2 LXI 1 101 16 LXI SPG B . F 3 MG 1 102 1 MG MG B . G 3 MG 1 103 3 MG MG B . H 4 HOH 1 201 89 HOH HOH A . H 4 HOH 2 202 13 HOH HOH A . H 4 HOH 3 203 68 HOH HOH A . H 4 HOH 4 204 30 HOH HOH A . H 4 HOH 5 205 7 HOH HOH A . H 4 HOH 6 206 9 HOH HOH A . H 4 HOH 7 207 86 HOH HOH A . H 4 HOH 8 208 103 HOH HOH A . H 4 HOH 9 209 48 HOH HOH A . H 4 HOH 10 210 97 HOH HOH A . H 4 HOH 11 211 82 HOH HOH A . H 4 HOH 12 212 16 HOH HOH A . H 4 HOH 13 213 104 HOH HOH A . H 4 HOH 14 214 78 HOH HOH A . H 4 HOH 15 215 66 HOH HOH A . H 4 HOH 16 216 95 HOH HOH A . H 4 HOH 17 217 11 HOH HOH A . H 4 HOH 18 218 39 HOH HOH A . H 4 HOH 19 219 58 HOH HOH A . H 4 HOH 20 220 92 HOH HOH A . H 4 HOH 21 221 31 HOH HOH A . H 4 HOH 22 222 72 HOH HOH A . H 4 HOH 23 223 50 HOH HOH A . H 4 HOH 24 224 28 HOH HOH A . H 4 HOH 25 225 83 HOH HOH A . H 4 HOH 26 226 64 HOH HOH A . H 4 HOH 27 227 6 HOH HOH A . H 4 HOH 28 228 10 HOH HOH A . H 4 HOH 29 229 51 HOH HOH A . H 4 HOH 30 230 73 HOH HOH A . H 4 HOH 31 231 57 HOH HOH A . H 4 HOH 32 232 38 HOH HOH A . H 4 HOH 33 233 90 HOH HOH A . H 4 HOH 34 234 98 HOH HOH A . H 4 HOH 35 235 33 HOH HOH A . H 4 HOH 36 236 35 HOH HOH A . H 4 HOH 37 237 32 HOH HOH A . H 4 HOH 38 238 59 HOH HOH A . H 4 HOH 39 239 37 HOH HOH A . H 4 HOH 40 240 63 HOH HOH A . H 4 HOH 41 241 5 HOH HOH A . H 4 HOH 42 242 36 HOH HOH A . H 4 HOH 43 243 67 HOH HOH A . H 4 HOH 44 244 3 HOH HOH A . H 4 HOH 45 245 52 HOH HOH A . H 4 HOH 46 246 4 HOH HOH A . I 4 HOH 1 201 77 HOH HOH B . I 4 HOH 2 202 44 HOH HOH B . I 4 HOH 3 203 106 HOH HOH B . I 4 HOH 4 204 54 HOH HOH B . I 4 HOH 5 205 34 HOH HOH B . I 4 HOH 6 206 71 HOH HOH B . I 4 HOH 7 207 80 HOH HOH B . I 4 HOH 8 208 47 HOH HOH B . I 4 HOH 9 209 100 HOH HOH B . I 4 HOH 10 210 40 HOH HOH B . I 4 HOH 11 211 88 HOH HOH B . I 4 HOH 12 212 8 HOH HOH B . I 4 HOH 13 213 94 HOH HOH B . I 4 HOH 14 214 102 HOH HOH B . I 4 HOH 15 215 84 HOH HOH B . I 4 HOH 16 216 85 HOH HOH B . I 4 HOH 17 217 74 HOH HOH B . I 4 HOH 18 218 43 HOH HOH B . I 4 HOH 19 219 15 HOH HOH B . I 4 HOH 20 220 23 HOH HOH B . I 4 HOH 21 221 22 HOH HOH B . I 4 HOH 22 222 18 HOH HOH B . I 4 HOH 23 223 25 HOH HOH B . I 4 HOH 24 224 21 HOH HOH B . I 4 HOH 25 225 56 HOH HOH B . I 4 HOH 26 226 20 HOH HOH B . I 4 HOH 27 227 42 HOH HOH B . I 4 HOH 28 228 62 HOH HOH B . I 4 HOH 29 229 93 HOH HOH B . I 4 HOH 30 230 79 HOH HOH B . I 4 HOH 31 231 53 HOH HOH B . I 4 HOH 32 232 17 HOH HOH B . I 4 HOH 33 233 26 HOH HOH B . I 4 HOH 34 234 1 HOH HOH B . I 4 HOH 35 235 2 HOH HOH B . I 4 HOH 36 236 61 HOH HOH B . I 4 HOH 37 237 60 HOH HOH B . I 4 HOH 38 238 65 HOH HOH B . I 4 HOH 39 239 107 HOH HOH B . I 4 HOH 40 240 24 HOH HOH B . I 4 HOH 41 241 91 HOH HOH B . I 4 HOH 42 242 81 HOH HOH B . I 4 HOH 43 243 49 HOH HOH B . I 4 HOH 44 244 76 HOH HOH B . I 4 HOH 45 245 27 HOH HOH B . I 4 HOH 46 246 41 HOH HOH B . I 4 HOH 47 247 75 HOH HOH B . I 4 HOH 48 248 19 HOH HOH B . I 4 HOH 49 249 29 HOH HOH B . I 4 HOH 50 250 87 HOH HOH B . I 4 HOH 51 251 46 HOH HOH B . I 4 HOH 52 252 12 HOH HOH B . I 4 HOH 53 253 55 HOH HOH B . I 4 HOH 54 254 99 HOH HOH B . I 4 HOH 55 255 101 HOH HOH B . I 4 HOH 56 256 14 HOH HOH B . I 4 HOH 57 257 69 HOH HOH B . I 4 HOH 58 258 96 HOH HOH B . I 4 HOH 59 259 105 HOH HOH B . I 4 HOH 60 260 70 HOH HOH B . I 4 HOH 61 261 45 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0267 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 7U87 _cell.details ? _cell.formula_units_Z ? _cell.length_a 42.741 _cell.length_a_esd ? _cell.length_b 42.741 _cell.length_b_esd ? _cell.length_c 83.280 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7U87 _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7U87 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.25 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 45.22 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.2 M Ammonium acetate, 0.1 M BIS-TRIS pH 6.5, 45% v/v (+/-)-2-Methyl-2,4-pentanediol' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 98 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2021-05-04 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 8.2.2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.000 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 8.2.2 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 7U87 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.70 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 10199 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 9.9 _reflns.pdbx_Rmerge_I_obs 0.089 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 19.4 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.094 _reflns.pdbx_Rpim_I_all 0.030 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1.0 _reflns.pdbx_CC_star 1.0 _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.73 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.7 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 474 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.348 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 6.5 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.376 _reflns_shell.pdbx_Rpim_I_all 0.139 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.989 _reflns_shell.pdbx_CC_star 0.997 _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] 0.010 _refine.aniso_B[1][2] 0.005 _refine.aniso_B[1][3] -0.000 _refine.aniso_B[2][2] 0.010 _refine.aniso_B[2][3] 0.000 _refine.aniso_B[3][3] -0.031 _refine.B_iso_max ? _refine.B_iso_mean 15.893 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.957 _refine.correlation_coeff_Fo_to_Fc_free 0.934 _refine.details 'Hydrogens have been added in their riding positions' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7U87 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.701 _refine.ls_d_res_low 41.675 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 9027 _refine.ls_number_reflns_R_free 469 _refine.ls_number_reflns_R_work 8558 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 88.491 _refine.ls_percent_reflns_R_free 5.196 _refine.ls_R_factor_all 0.191 _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.2399 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1879 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'MASK BULK SOLVENT' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 6C8O _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.133 _refine.pdbx_overall_ESU_R_Free 0.133 _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 2.416 _refine.overall_SU_ML 0.078 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 378 _refine_hist.pdbx_number_atoms_ligand 327 _refine_hist.number_atoms_solvent 107 _refine_hist.number_atoms_total 812 _refine_hist.d_res_high 1.701 _refine_hist.d_res_low 41.675 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.033 0.019 788 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.030 0.024 358 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 3.256 2.377 1192 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 3.509 2.604 840 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 0.197 0.200 152 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 1.478 0.200 26 ? r_chiral_restr_other ? ? 'X-RAY DIFFRACTION' ? 0.018 0.021 418 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.023 136 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? 0.124 0.200 94 ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.239 0.200 479 ? r_symmetry_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.250 0.200 317 ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? 0.294 0.200 189 ? r_symmetry_nbtor_other ? ? 'X-RAY DIFFRACTION' ? 0.140 0.200 73 ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.079 0.200 1 ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? 0.287 0.200 10 ? r_symmetry_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.188 0.200 46 ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.185 0.200 20 ? r_symmetry_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 2.300 1.586 788 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 2.299 1.595 789 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? 3.691 2.367 1192 ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 3.689 2.376 1193 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 7.786 14.436 1131 ? r_lrange_it ? ? 'X-RAY DIFFRACTION' ? 7.776 14.229 1113 ? r_lrange_other ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.701 1.745 . . 13 246 36.4276 . . . 0.298 . 0.173 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.745 1.793 . . 15 348 48.7903 . . . 0.282 . 0.201 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.793 1.845 . . 26 433 65.3846 . . . 0.309 . 0.220 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.845 1.902 . . 20 593 91.3562 . . . 0.267 . 0.241 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.902 1.964 . . 43 591 97.9907 . . . 0.289 . 0.248 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.964 2.033 . . 26 628 100.0000 . . . 0.268 . 0.199 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.033 2.110 . . 42 563 100.0000 . . . 0.240 . 0.217 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.110 2.196 . . 28 567 100.0000 . . . 0.210 . 0.186 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.196 2.293 . . 33 543 98.9691 . . . 0.331 . 0.219 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.293 2.405 . . 31 519 100.0000 . . . 0.248 . 0.184 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.405 2.535 . . 45 488 100.0000 . . . 0.323 . 0.185 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.535 2.689 . . 22 481 100.0000 . . . 0.323 . 0.215 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.689 2.874 . . 21 446 100.0000 . . . 0.216 . 0.201 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.874 3.104 . . 13 420 99.0847 . . . 0.191 . 0.178 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.104 3.400 . . 18 387 99.5086 . . . 0.180 . 0.161 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.400 3.801 . . 23 349 98.4127 . . . 0.231 . 0.160 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.801 4.387 . . 9 328 100.0000 . . . 0.145 . 0.134 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.387 5.369 . . 15 280 100.0000 . . . 0.133 . 0.136 . . . . . . . . . . . 'X-RAY DIFFRACTION' 5.369 7.578 . . 17 214 99.5690 . . . 0.152 . 0.183 . . . . . . . . . . . 'X-RAY DIFFRACTION' 7.578 41.675 . . 9 134 94.7020 . . . 0.283 . 0.217 . . . . . . . . . . . # _struct.entry_id 7U87 _struct.title 'Product of 13mer primer with activated G monomer diastereomer 1' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7U87 _struct_keywords.text 'RNA duplex, Phosphorothioate, Non-enzymatic RNA extension, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 3 ? G N N 3 ? H N N 4 ? I N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7U87 _struct_ref.pdbx_db_accession 7U87 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7U87 A 1 ? 15 ? 7U87 1 ? 15 ? 1 15 2 1 7U87 B 1 ? 15 ? 7U87 1 ? 15 ? 1 15 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4730 ? 1 MORE 1 ? 1 'SSA (A^2)' 5650 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LCC 1 "O3'" ? ? ? 1_555 A LCC 2 P ? ? A LCC 1 A LCC 2 1_555 ? ? ? ? ? ? ? 1.632 ? ? covale2 covale both ? A LCC 2 "O3'" ? ? ? 1_555 A LCC 3 P ? ? A LCC 2 A LCC 3 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale3 covale both ? A LCC 3 "O3'" ? ? ? 1_555 A LCG 4 P ? ? A LCC 3 A LCG 4 1_555 ? ? ? ? ? ? ? 1.541 ? ? covale4 covale both ? A LCG 4 "O3'" ? ? ? 1_555 A A 5 P ? ? A LCG 4 A A 5 1_555 ? ? ? ? ? ? ? 1.554 ? ? covale5 covale both ? A C 13 "O3'" ? ? ? 1_555 A G46 14 P ? ? A C 13 A G46 14 1_555 ? ? ? ? ? ? ? 1.630 ? ? covale6 covale one ? A G46 14 "O3'" ? ? ? 1_555 A G46 15 P ? ? A G46 14 A G46 15 1_555 ? ? ? ? ? ? ? 1.669 ? ? covale7 covale both ? B LCC 1 "O3'" ? ? ? 1_555 B LCC 2 P ? ? B LCC 1 B LCC 2 1_555 ? ? ? ? ? ? ? 1.636 ? ? covale8 covale both ? B LCC 2 "O3'" ? ? ? 1_555 B LCC 3 P ? ? B LCC 2 B LCC 3 1_555 ? ? ? ? ? ? ? 1.616 ? ? covale9 covale both ? B LCC 3 "O3'" ? ? ? 1_555 B LCG 4 P ? ? B LCC 3 B LCG 4 1_555 ? ? ? ? ? ? ? 1.584 ? ? covale10 covale both ? B LCG 4 "O3'" ? ? ? 1_555 B A 5 P ? ? B LCG 4 B A 5 1_555 ? ? ? ? ? ? ? 1.571 ? ? covale11 covale both ? B C 13 "O3'" ? ? ? 1_555 B G46 14 P ? ? B C 13 B G46 14 1_555 ? ? ? ? ? ? ? 1.631 ? ? covale12 covale one ? B G46 14 "O3'" ? ? ? 1_555 B G46 15 P ? ? B G46 14 B G46 15 1_555 ? ? ? ? ? ? ? 1.613 ? ? metalc1 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 102 A HOH 202 1_555 ? ? ? ? ? ? ? 2.122 ? ? metalc2 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 102 A HOH 217 2_655 ? ? ? ? ? ? ? 2.080 ? ? metalc3 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 102 A HOH 228 1_555 ? ? ? ? ? ? ? 2.064 ? ? metalc4 metalc ? ? D MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 102 B HOH 218 1_555 ? ? ? ? ? ? ? 2.341 ? ? metalc5 metalc ? ? D MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 102 B HOH 252 1_555 ? ? ? ? ? ? ? 2.303 ? ? metalc6 metalc ? ? D MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 102 B HOH 256 1_555 ? ? ? ? ? ? ? 2.053 ? ? metalc7 metalc ? ? H HOH . O ? ? ? 1_555 F MG . MG ? ? A HOH 241 B MG 102 1_555 ? ? ? ? ? ? ? 2.011 ? ? metalc8 metalc ? ? H HOH . O ? ? ? 1_555 F MG . MG ? ? A HOH 244 B MG 102 1_555 ? ? ? ? ? ? ? 2.000 ? ? metalc9 metalc ? ? H HOH . O ? ? ? 1_555 F MG . MG ? ? A HOH 246 B MG 102 1_555 ? ? ? ? ? ? ? 2.104 ? ? metalc10 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 102 B HOH 210 1_555 ? ? ? ? ? ? ? 2.030 ? ? metalc11 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 102 B HOH 234 3_665 ? ? ? ? ? ? ? 2.119 ? ? metalc12 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 102 B HOH 235 1_555 ? ? ? ? ? ? ? 2.195 ? ? metalc13 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 103 B HOH 202 1_555 ? ? ? ? ? ? ? 2.331 ? ? metalc14 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 103 B HOH 220 1_555 ? ? ? ? ? ? ? 2.323 ? ? metalc15 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 103 B HOH 221 1_555 ? ? ? ? ? ? ? 2.083 ? ? metalc16 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 103 B HOH 257 1_555 ? ? ? ? ? ? ? 1.911 ? ? metalc17 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 103 B HOH 260 1_555 ? ? ? ? ? ? ? 2.097 ? ? metalc18 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 103 B HOH 261 1_555 ? ? ? ? ? ? ? 2.164 ? ? hydrog1 hydrog ? ? A LCG 4 N1 ? ? ? 1_555 B C 13 N3 ? ? A LCG 4 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A LCG 4 N2 ? ? ? 1_555 B C 13 O2 ? ? A LCG 4 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A LCG 4 O6 ? ? ? 1_555 B C 13 N4 ? ? A LCG 4 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 5 N1 ? ? ? 1_555 B U 12 N3 ? ? A A 5 B U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 5 N6 ? ? ? 1_555 B U 12 O4 ? ? A A 5 B U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 6 N3 ? ? ? 1_555 B G 11 N1 ? ? A C 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 6 N4 ? ? ? 1_555 B G 11 O6 ? ? A C 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 6 O2 ? ? ? 1_555 B G 11 N2 ? ? A C 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 7 N3 ? ? ? 1_555 B A 10 N1 ? ? A U 7 B A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 7 O4 ? ? ? 1_555 B A 10 N6 ? ? A U 7 B A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 8 N3 ? ? ? 1_555 B A 9 N1 ? ? A U 8 B A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 8 O4 ? ? ? 1_555 B A 9 N6 ? ? A U 8 B A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 9 N1 ? ? ? 1_555 B U 8 N3 ? ? A A 9 B U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 9 N6 ? ? ? 1_555 B U 8 O4 ? ? A A 9 B U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 10 N1 ? ? ? 1_555 B U 7 N3 ? ? A A 10 B U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 10 N6 ? ? ? 1_555 B U 7 O4 ? ? A A 10 B U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 11 N1 ? ? ? 1_555 B C 6 N3 ? ? A G 11 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 11 N2 ? ? ? 1_555 B C 6 O2 ? ? A G 11 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 11 O6 ? ? ? 1_555 B C 6 N4 ? ? A G 11 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 12 N3 ? ? ? 1_555 B A 5 N1 ? ? A U 12 B A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 12 O4 ? ? ? 1_555 B A 5 N6 ? ? A U 12 B A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 13 N3 ? ? ? 1_555 B LCG 4 N1 ? ? A C 13 B LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 13 N4 ? ? ? 1_555 B LCG 4 O6 ? ? A C 13 B LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 13 O2 ? ? ? 1_555 B LCG 4 N2 ? ? A C 13 B LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? H HOH . ? A HOH 202 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? H HOH . ? A HOH 217 ? 2_655 91.1 ? 2 O ? H HOH . ? A HOH 202 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? H HOH . ? A HOH 228 ? 1_555 97.5 ? 3 O ? H HOH . ? A HOH 217 ? 2_655 MG ? D MG . ? A MG 102 ? 1_555 O ? H HOH . ? A HOH 228 ? 1_555 89.6 ? 4 O ? H HOH . ? A HOH 202 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? I HOH . ? B HOH 218 ? 1_555 86.0 ? 5 O ? H HOH . ? A HOH 217 ? 2_655 MG ? D MG . ? A MG 102 ? 1_555 O ? I HOH . ? B HOH 218 ? 1_555 175.2 ? 6 O ? H HOH . ? A HOH 228 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? I HOH . ? B HOH 218 ? 1_555 87.0 ? 7 O ? H HOH . ? A HOH 202 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? I HOH . ? B HOH 252 ? 1_555 82.0 ? 8 O ? H HOH . ? A HOH 217 ? 2_655 MG ? D MG . ? A MG 102 ? 1_555 O ? I HOH . ? B HOH 252 ? 1_555 91.0 ? 9 O ? H HOH . ? A HOH 228 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? I HOH . ? B HOH 252 ? 1_555 179.3 ? 10 O ? I HOH . ? B HOH 218 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? I HOH . ? B HOH 252 ? 1_555 92.4 ? 11 O ? H HOH . ? A HOH 202 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? I HOH . ? B HOH 256 ? 1_555 162.9 ? 12 O ? H HOH . ? A HOH 217 ? 2_655 MG ? D MG . ? A MG 102 ? 1_555 O ? I HOH . ? B HOH 256 ? 1_555 101.9 ? 13 O ? H HOH . ? A HOH 228 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? I HOH . ? B HOH 256 ? 1_555 93.7 ? 14 O ? I HOH . ? B HOH 218 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? I HOH . ? B HOH 256 ? 1_555 81.7 ? 15 O ? I HOH . ? B HOH 252 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? I HOH . ? B HOH 256 ? 1_555 86.6 ? 16 O ? H HOH . ? A HOH 241 ? 1_555 MG ? F MG . ? B MG 102 ? 1_555 O ? H HOH . ? A HOH 244 ? 1_555 96.8 ? 17 O ? H HOH . ? A HOH 241 ? 1_555 MG ? F MG . ? B MG 102 ? 1_555 O ? H HOH . ? A HOH 246 ? 1_555 88.0 ? 18 O ? H HOH . ? A HOH 244 ? 1_555 MG ? F MG . ? B MG 102 ? 1_555 O ? H HOH . ? A HOH 246 ? 1_555 92.1 ? 19 O ? H HOH . ? A HOH 241 ? 1_555 MG ? F MG . ? B MG 102 ? 1_555 O ? I HOH . ? B HOH 210 ? 1_555 85.3 ? 20 O ? H HOH . ? A HOH 244 ? 1_555 MG ? F MG . ? B MG 102 ? 1_555 O ? I HOH . ? B HOH 210 ? 1_555 83.1 ? 21 O ? H HOH . ? A HOH 246 ? 1_555 MG ? F MG . ? B MG 102 ? 1_555 O ? I HOH . ? B HOH 210 ? 1_555 171.2 ? 22 O ? H HOH . ? A HOH 241 ? 1_555 MG ? F MG . ? B MG 102 ? 1_555 O ? I HOH . ? B HOH 234 ? 3_665 174.2 ? 23 O ? H HOH . ? A HOH 244 ? 1_555 MG ? F MG . ? B MG 102 ? 1_555 O ? I HOH . ? B HOH 234 ? 3_665 88.6 ? 24 O ? H HOH . ? A HOH 246 ? 1_555 MG ? F MG . ? B MG 102 ? 1_555 O ? I HOH . ? B HOH 234 ? 3_665 94.0 ? 25 O ? I HOH . ? B HOH 210 ? 1_555 MG ? F MG . ? B MG 102 ? 1_555 O ? I HOH . ? B HOH 234 ? 3_665 93.3 ? 26 O ? H HOH . ? A HOH 241 ? 1_555 MG ? F MG . ? B MG 102 ? 1_555 O ? I HOH . ? B HOH 235 ? 1_555 84.6 ? 27 O ? H HOH . ? A HOH 244 ? 1_555 MG ? F MG . ? B MG 102 ? 1_555 O ? I HOH . ? B HOH 235 ? 1_555 177.9 ? 28 O ? H HOH . ? A HOH 246 ? 1_555 MG ? F MG . ? B MG 102 ? 1_555 O ? I HOH . ? B HOH 235 ? 1_555 89.5 ? 29 O ? I HOH . ? B HOH 210 ? 1_555 MG ? F MG . ? B MG 102 ? 1_555 O ? I HOH . ? B HOH 235 ? 1_555 95.4 ? 30 O ? I HOH . ? B HOH 234 ? 3_665 MG ? F MG . ? B MG 102 ? 1_555 O ? I HOH . ? B HOH 235 ? 1_555 89.9 ? 31 O ? I HOH . ? B HOH 202 ? 1_555 MG ? G MG . ? B MG 103 ? 1_555 O ? I HOH . ? B HOH 220 ? 1_555 86.1 ? 32 O ? I HOH . ? B HOH 202 ? 1_555 MG ? G MG . ? B MG 103 ? 1_555 O ? I HOH . ? B HOH 221 ? 1_555 99.4 ? 33 O ? I HOH . ? B HOH 220 ? 1_555 MG ? G MG . ? B MG 103 ? 1_555 O ? I HOH . ? B HOH 221 ? 1_555 92.3 ? 34 O ? I HOH . ? B HOH 202 ? 1_555 MG ? G MG . ? B MG 103 ? 1_555 O ? I HOH . ? B HOH 257 ? 1_555 170.2 ? 35 O ? I HOH . ? B HOH 220 ? 1_555 MG ? G MG . ? B MG 103 ? 1_555 O ? I HOH . ? B HOH 257 ? 1_555 91.6 ? 36 O ? I HOH . ? B HOH 221 ? 1_555 MG ? G MG . ? B MG 103 ? 1_555 O ? I HOH . ? B HOH 257 ? 1_555 90.3 ? 37 O ? I HOH . ? B HOH 202 ? 1_555 MG ? G MG . ? B MG 103 ? 1_555 O ? I HOH . ? B HOH 260 ? 1_555 86.5 ? 38 O ? I HOH . ? B HOH 220 ? 1_555 MG ? G MG . ? B MG 103 ? 1_555 O ? I HOH . ? B HOH 260 ? 1_555 83.3 ? 39 O ? I HOH . ? B HOH 221 ? 1_555 MG ? G MG . ? B MG 103 ? 1_555 O ? I HOH . ? B HOH 260 ? 1_555 172.5 ? 40 O ? I HOH . ? B HOH 257 ? 1_555 MG ? G MG . ? B MG 103 ? 1_555 O ? I HOH . ? B HOH 260 ? 1_555 83.7 ? 41 O ? I HOH . ? B HOH 202 ? 1_555 MG ? G MG . ? B MG 103 ? 1_555 O ? I HOH . ? B HOH 261 ? 1_555 84.8 ? 42 O ? I HOH . ? B HOH 220 ? 1_555 MG ? G MG . ? B MG 103 ? 1_555 O ? I HOH . ? B HOH 261 ? 1_555 170.6 ? 43 O ? I HOH . ? B HOH 221 ? 1_555 MG ? G MG . ? B MG 103 ? 1_555 O ? I HOH . ? B HOH 261 ? 1_555 87.0 ? 44 O ? I HOH . ? B HOH 257 ? 1_555 MG ? G MG . ? B MG 103 ? 1_555 O ? I HOH . ? B HOH 261 ? 1_555 97.7 ? 45 O ? I HOH . ? B HOH 260 ? 1_555 MG ? G MG . ? B MG 103 ? 1_555 O ? I HOH . ? B HOH 261 ? 1_555 98.3 ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O1P _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 G46 _pdbx_validate_symm_contact.auth_seq_id_1 15 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O3 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 LXI _pdbx_validate_symm_contact.auth_seq_id_2 101 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_655 _pdbx_validate_symm_contact.dist 2.14 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 P _pdbx_validate_rmsd_bond.auth_asym_id_1 B _pdbx_validate_rmsd_bond.auth_comp_id_1 G _pdbx_validate_rmsd_bond.auth_seq_id_1 11 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 "O5'" _pdbx_validate_rmsd_bond.auth_asym_id_2 B _pdbx_validate_rmsd_bond.auth_comp_id_2 G _pdbx_validate_rmsd_bond.auth_seq_id_2 11 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.656 _pdbx_validate_rmsd_bond.bond_target_value 1.593 _pdbx_validate_rmsd_bond.bond_deviation 0.063 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.010 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O3'" A U 7 ? ? P A U 8 ? ? OP2 A U 8 ? ? 119.49 110.50 8.99 1.10 Y 2 1 "O5'" A U 8 ? ? P A U 8 ? ? OP2 A U 8 ? ? 97.95 105.70 -7.75 0.90 N 3 1 "O3'" A U 12 ? ? P A C 13 ? ? OP2 A C 13 ? ? 119.51 110.50 9.01 1.10 Y 4 1 "C3'" B LCC 1 ? ? "O3'" B LCC 1 ? ? P B LCC 2 ? ? 128.77 119.70 9.07 1.20 Y 5 1 "O3'" B U 12 ? ? P B C 13 ? ? OP2 B C 13 ? ? 117.14 110.50 6.64 1.10 Y # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 233 ? H HOH . 2 1 A HOH 238 ? H HOH . 3 1 B HOH 236 ? I HOH . 4 1 B HOH 237 ? I HOH . # _pdbx_entry_details.entry_id 7U87 _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 G46 P P N N 111 G46 O1P O N N 112 G46 S2P S N N 113 G46 O3P O N N 114 G46 "O5'" O N N 115 G46 "C5'" C N N 116 G46 "C4'" C N R 117 G46 "O4'" O N N 118 G46 "C3'" C N S 119 G46 "O3'" O N N 120 G46 "C2'" C N R 121 G46 "C1'" C N R 122 G46 "O2'" O N N 123 G46 N9 N Y N 124 G46 C8 C Y N 125 G46 N7 N Y N 126 G46 C5 C Y N 127 G46 C6 C N N 128 G46 O6 O N N 129 G46 N1 N N N 130 G46 C2 C N N 131 G46 N2 N N N 132 G46 N3 N N N 133 G46 C4 C Y N 134 G46 H1P H N N 135 G46 HS H N N 136 G46 "H5'1" H N N 137 G46 "H5'2" H N N 138 G46 "H4'" H N N 139 G46 "H3'" H N N 140 G46 HA H N N 141 G46 "H2'" H N N 142 G46 "H1'" H N N 143 G46 HB H N N 144 G46 H8 H N N 145 G46 H1 H N N 146 G46 H2N1 H N N 147 G46 H2N2 H N N 148 HOH O O N N 149 HOH H1 H N N 150 HOH H2 H N N 151 LCC "O5'" O N N 152 LCC "C5'" C N N 153 LCC "C4'" C N R 154 LCC "O4'" O N N 155 LCC "C1'" C N R 156 LCC N1 N N N 157 LCC C6 C N N 158 LCC C5 C N N 159 LCC C5M C N N 160 LCC C4 C N N 161 LCC N4 N N N 162 LCC N3 N N N 163 LCC C2 C N N 164 LCC O2 O N N 165 LCC "C3'" C N S 166 LCC "C2'" C N R 167 LCC "O2'" O N N 168 LCC "O3'" O N N 169 LCC "C6'" C N N 170 LCC P P N N 171 LCC O1P O N N 172 LCC O2P O N N 173 LCC OXT O N N 174 LCC "H5'1" H N N 175 LCC "H5'2" H N N 176 LCC "H1'" H N N 177 LCC H6 H N N 178 LCC H5M1 H N N 179 LCC H5M2 H N N 180 LCC H5M3 H N N 181 LCC H41 H N N 182 LCC H42 H N N 183 LCC "H3'" H N N 184 LCC "H2'1" H N N 185 LCC H3T H N N 186 LCC "H6'1" H N N 187 LCC "H6'2" H N N 188 LCC H1P H N N 189 LCC HXT H N N 190 LCG P P N N 191 LCG OP1 O N N 192 LCG "O5'" O N N 193 LCG "C5'" C N N 194 LCG "C3'" C N S 195 LCG "C6'" C N N 196 LCG N9 N Y N 197 LCG C8 C Y N 198 LCG C4 C Y N 199 LCG N7 N Y N 200 LCG C5 C Y N 201 LCG C6 C N N 202 LCG "C2'" C N R 203 LCG O6 O N N 204 LCG "C4'" C N R 205 LCG "C1'" C N R 206 LCG C2 C N N 207 LCG N1 N N N 208 LCG "O4'" O N N 209 LCG OP2 O N N 210 LCG N2 N N N 211 LCG N3 N N N 212 LCG "O2'" O N N 213 LCG "O3'" O N N 214 LCG OP3 O N N 215 LCG "H5'" H N N 216 LCG "H5''" H N N 217 LCG "H3'" H N N 218 LCG "H6'1" H N N 219 LCG "H6'2" H N N 220 LCG H8 H N N 221 LCG "H2'" H N N 222 LCG "H1'" H N N 223 LCG H1 H N N 224 LCG HOP2 H N N 225 LCG H21 H N N 226 LCG H22 H N N 227 LCG "HO3'" H N N 228 LCG HOP3 H N N 229 LXI N1 N Y N 230 LXI C1 C Y N 231 LXI N2 N Y N 232 LXI C2 C Y N 233 LXI C3 C N N 234 LXI N3 N N N 235 LXI C4 C N N 236 LXI N4 N N N 237 LXI C5 C Y N 238 LXI O1 O N N 239 LXI N5 N N N 240 LXI C6 C N R 241 LXI O2 O N N 242 LXI C7 C N R 243 LXI O3 O N N 244 LXI C8 C N S 245 LXI O4 O N N 246 LXI C9 C N R 247 LXI C10 C N N 248 LXI O5 O N N 249 LXI P1 P N R 250 LXI S1 S N N 251 LXI O6 O N N 252 LXI N6 N Y N 253 LXI C11 C Y N 254 LXI C12 C Y N 255 LXI N7 N Y N 256 LXI C13 C Y N 257 LXI N8 N N N 258 LXI H1 H N N 259 LXI H2 H N N 260 LXI H3 H N N 261 LXI H4 H N N 262 LXI H5 H N N 263 LXI H6 H N N 264 LXI H7 H N N 265 LXI H8 H N N 266 LXI H9 H N N 267 LXI H10 H N N 268 LXI H11 H N N 269 LXI H12 H N N 270 LXI H13 H N N 271 LXI H14 H N N 272 LXI H15 H N N 273 LXI H16 H N N 274 LXI H17 H N N 275 MG MG MG N N 276 U OP3 O N N 277 U P P N N 278 U OP1 O N N 279 U OP2 O N N 280 U "O5'" O N N 281 U "C5'" C N N 282 U "C4'" C N R 283 U "O4'" O N N 284 U "C3'" C N S 285 U "O3'" O N N 286 U "C2'" C N R 287 U "O2'" O N N 288 U "C1'" C N R 289 U N1 N N N 290 U C2 C N N 291 U O2 O N N 292 U N3 N N N 293 U C4 C N N 294 U O4 O N N 295 U C5 C N N 296 U C6 C N N 297 U HOP3 H N N 298 U HOP2 H N N 299 U "H5'" H N N 300 U "H5''" H N N 301 U "H4'" H N N 302 U "H3'" H N N 303 U "HO3'" H N N 304 U "H2'" H N N 305 U "HO2'" H N N 306 U "H1'" H N N 307 U H3 H N N 308 U H5 H N N 309 U H6 H N N 310 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 G46 P O1P sing N N 116 G46 P S2P sing N N 117 G46 P O3P doub N N 118 G46 P "O5'" sing N N 119 G46 O1P H1P sing N N 120 G46 S2P HS sing N N 121 G46 "O5'" "C5'" sing N N 122 G46 "C5'" "C4'" sing N N 123 G46 "C5'" "H5'1" sing N N 124 G46 "C5'" "H5'2" sing N N 125 G46 "C4'" "O4'" sing N N 126 G46 "C4'" "C3'" sing N N 127 G46 "C4'" "H4'" sing N N 128 G46 "O4'" "C1'" sing N N 129 G46 "C3'" "O3'" sing N N 130 G46 "C3'" "C2'" sing N N 131 G46 "C3'" "H3'" sing N N 132 G46 "O3'" HA sing N N 133 G46 "C2'" "C1'" sing N N 134 G46 "C2'" "O2'" sing N N 135 G46 "C2'" "H2'" sing N N 136 G46 "C1'" N9 sing N N 137 G46 "C1'" "H1'" sing N N 138 G46 "O2'" HB sing N N 139 G46 N9 C8 sing Y N 140 G46 N9 C4 sing Y N 141 G46 C8 N7 doub Y N 142 G46 C8 H8 sing N N 143 G46 N7 C5 sing Y N 144 G46 C5 C6 sing N N 145 G46 C5 C4 doub Y N 146 G46 C6 O6 doub N N 147 G46 C6 N1 sing N N 148 G46 N1 C2 sing N N 149 G46 N1 H1 sing N N 150 G46 C2 N2 sing N N 151 G46 C2 N3 doub N N 152 G46 N2 H2N1 sing N N 153 G46 N2 H2N2 sing N N 154 G46 N3 C4 sing N N 155 HOH O H1 sing N N 156 HOH O H2 sing N N 157 LCC "O5'" "C5'" sing N N 158 LCC "O5'" P sing N N 159 LCC "C5'" "C4'" sing N N 160 LCC "C5'" "H5'1" sing N N 161 LCC "C5'" "H5'2" sing N N 162 LCC "C4'" "O4'" sing N N 163 LCC "C4'" "C3'" sing N N 164 LCC "C4'" "C6'" sing N N 165 LCC "O4'" "C1'" sing N N 166 LCC "C1'" N1 sing N N 167 LCC "C1'" "C2'" sing N N 168 LCC "C1'" "H1'" sing N N 169 LCC N1 C6 sing N N 170 LCC N1 C2 sing N N 171 LCC C6 C5 doub N N 172 LCC C6 H6 sing N N 173 LCC C5 C5M sing N N 174 LCC C5 C4 sing N N 175 LCC C5M H5M1 sing N N 176 LCC C5M H5M2 sing N N 177 LCC C5M H5M3 sing N N 178 LCC C4 N4 sing N N 179 LCC C4 N3 doub N N 180 LCC N4 H41 sing N N 181 LCC N4 H42 sing N N 182 LCC N3 C2 sing N N 183 LCC C2 O2 doub N N 184 LCC "C3'" "C2'" sing N N 185 LCC "C3'" "O3'" sing N N 186 LCC "C3'" "H3'" sing N N 187 LCC "C2'" "O2'" sing N N 188 LCC "C2'" "H2'1" sing N N 189 LCC "O2'" "C6'" sing N N 190 LCC "O3'" H3T sing N N 191 LCC "C6'" "H6'1" sing N N 192 LCC "C6'" "H6'2" sing N N 193 LCC P O1P sing N N 194 LCC P O2P doub N N 195 LCC P OXT sing N N 196 LCC O1P H1P sing N N 197 LCC OXT HXT sing N N 198 LCG P OP1 doub N N 199 LCG P "O5'" sing N N 200 LCG P OP2 sing N N 201 LCG P OP3 sing N N 202 LCG "O5'" "C5'" sing N N 203 LCG "C5'" "C4'" sing N N 204 LCG "C5'" "H5'" sing N N 205 LCG "C5'" "H5''" sing N N 206 LCG "C3'" "C2'" sing N N 207 LCG "C3'" "C4'" sing N N 208 LCG "C3'" "O3'" sing N N 209 LCG "C3'" "H3'" sing N N 210 LCG "C6'" "C4'" sing N N 211 LCG "C6'" "O2'" sing N N 212 LCG "C6'" "H6'1" sing N N 213 LCG "C6'" "H6'2" sing N N 214 LCG N9 C8 sing Y N 215 LCG N9 C4 sing Y N 216 LCG N9 "C1'" sing N N 217 LCG C8 N7 doub Y N 218 LCG C8 H8 sing N N 219 LCG C4 C5 doub Y N 220 LCG C4 N3 sing N N 221 LCG N7 C5 sing Y N 222 LCG C5 C6 sing N N 223 LCG C6 O6 doub N N 224 LCG C6 N1 sing N N 225 LCG "C2'" "C1'" sing N N 226 LCG "C2'" "O2'" sing N N 227 LCG "C2'" "H2'" sing N N 228 LCG "C4'" "O4'" sing N N 229 LCG "C1'" "O4'" sing N N 230 LCG "C1'" "H1'" sing N N 231 LCG C2 N1 sing N N 232 LCG C2 N2 sing N N 233 LCG C2 N3 doub N N 234 LCG N1 H1 sing N N 235 LCG OP2 HOP2 sing N N 236 LCG N2 H21 sing N N 237 LCG N2 H22 sing N N 238 LCG "O3'" "HO3'" sing N N 239 LCG OP3 HOP3 sing N N 240 LXI N5 C4 sing N N 241 LXI N3 C4 sing N N 242 LXI N3 C3 sing N N 243 LXI C4 N4 doub N N 244 LXI N4 C5 sing N N 245 LXI C3 O1 doub N N 246 LXI C3 C2 sing N N 247 LXI C5 C2 doub Y N 248 LXI C5 N1 sing Y N 249 LXI C2 N2 sing Y N 250 LXI N8 C13 sing N N 251 LXI N2 C1 doub Y N 252 LXI N1 C6 sing N N 253 LXI N1 C1 sing Y N 254 LXI C6 O2 sing N N 255 LXI C6 C7 sing N N 256 LXI O2 C9 sing N N 257 LXI O3 C7 sing N N 258 LXI N7 C13 doub Y N 259 LXI N7 C12 sing Y N 260 LXI C13 N6 sing Y N 261 LXI C7 C8 sing N N 262 LXI C9 C8 sing N N 263 LXI C9 C10 sing N N 264 LXI O4 C8 sing N N 265 LXI C12 C11 doub Y N 266 LXI O5 C10 sing N N 267 LXI O5 P1 sing N N 268 LXI N6 C11 sing Y N 269 LXI N6 P1 sing N N 270 LXI P1 S1 sing N N 271 LXI P1 O6 doub N N 272 LXI C1 H1 sing N N 273 LXI N3 H2 sing N N 274 LXI N5 H3 sing N N 275 LXI N5 H4 sing N N 276 LXI C6 H5 sing N N 277 LXI C7 H6 sing N N 278 LXI O3 H7 sing N N 279 LXI C8 H8 sing N N 280 LXI O4 H9 sing N N 281 LXI C9 H10 sing N N 282 LXI C10 H11 sing N N 283 LXI C10 H12 sing N N 284 LXI S1 H13 sing N N 285 LXI C11 H14 sing N N 286 LXI C12 H15 sing N N 287 LXI N8 H16 sing N N 288 LXI N8 H17 sing N N 289 U OP3 P sing N N 290 U OP3 HOP3 sing N N 291 U P OP1 doub N N 292 U P OP2 sing N N 293 U P "O5'" sing N N 294 U OP2 HOP2 sing N N 295 U "O5'" "C5'" sing N N 296 U "C5'" "C4'" sing N N 297 U "C5'" "H5'" sing N N 298 U "C5'" "H5''" sing N N 299 U "C4'" "O4'" sing N N 300 U "C4'" "C3'" sing N N 301 U "C4'" "H4'" sing N N 302 U "O4'" "C1'" sing N N 303 U "C3'" "O3'" sing N N 304 U "C3'" "C2'" sing N N 305 U "C3'" "H3'" sing N N 306 U "O3'" "HO3'" sing N N 307 U "C2'" "O2'" sing N N 308 U "C2'" "C1'" sing N N 309 U "C2'" "H2'" sing N N 310 U "O2'" "HO2'" sing N N 311 U "C1'" N1 sing N N 312 U "C1'" "H1'" sing N N 313 U N1 C2 sing N N 314 U N1 C6 sing N N 315 U C2 O2 doub N N 316 U C2 N3 sing N N 317 U N3 C4 sing N N 318 U N3 H3 sing N N 319 U C4 O4 doub N N 320 U C4 C5 sing N N 321 U C5 C6 doub N N 322 U C5 H5 sing N N 323 U C6 H6 sing N N 324 # _ndb_struct_conf_na.entry_id 7U87 _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A LCG 4 1_555 B C 13 1_555 -0.176 -0.231 0.049 -1.555 -13.336 -0.382 1 A_LCG4:C13_B A 4 ? B 13 ? 19 1 1 A A 5 1_555 B U 12 1_555 0.018 -0.081 0.194 4.695 -11.512 -3.206 2 A_A5:U12_B A 5 ? B 12 ? 20 1 1 A C 6 1_555 B G 11 1_555 0.178 -0.094 0.041 9.884 -14.901 0.131 3 A_C6:G11_B A 6 ? B 11 ? 19 1 1 A U 7 1_555 B A 10 1_555 0.065 -0.136 -0.051 4.517 -17.937 2.210 4 A_U7:A10_B A 7 ? B 10 ? 20 1 1 A U 8 1_555 B A 9 1_555 -0.100 -0.116 0.060 2.583 -12.166 2.765 5 A_U8:A9_B A 8 ? B 9 ? 20 1 1 A A 9 1_555 B U 8 1_555 0.104 -0.097 0.114 -1.949 -16.582 2.555 6 A_A9:U8_B A 9 ? B 8 ? 20 1 1 A A 10 1_555 B U 7 1_555 0.017 -0.102 0.166 0.996 -13.925 2.567 7 A_A10:U7_B A 10 ? B 7 ? 20 1 1 A G 11 1_555 B C 6 1_555 -0.163 -0.114 0.019 -8.022 -20.074 -0.878 8 A_G11:C6_B A 11 ? B 6 ? 19 1 1 A U 12 1_555 B A 5 1_555 -0.044 -0.163 0.154 -5.730 -12.233 -5.019 9 A_U12:A5_B A 12 ? B 5 ? 20 1 1 A C 13 1_555 B LCG 4 1_555 0.260 -0.162 0.270 -3.294 -12.693 -1.605 10 A_C13:LCG4_B A 13 ? B 4 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A LCG 4 1_555 B C 13 1_555 A A 5 1_555 B U 12 1_555 -0.326 -1.199 3.055 -1.180 3.871 32.203 -2.767 0.393 2.904 6.945 2.118 32.449 1 AA_LCG4A5:U12C13_BB A 4 ? B 13 ? A 5 ? B 12 ? 1 A A 5 1_555 B U 12 1_555 A C 6 1_555 B G 11 1_555 0.496 -1.509 3.095 1.156 3.524 33.184 -3.167 -0.687 2.939 6.147 -2.017 33.385 2 AA_A5C6:G11U12_BB A 5 ? B 12 ? A 6 ? B 11 ? 1 A C 6 1_555 B G 11 1_555 A U 7 1_555 B A 10 1_555 -0.287 -1.605 3.319 -1.947 10.557 30.321 -4.676 0.190 2.639 19.434 3.584 32.123 3 AA_C6U7:A10G11_BB A 6 ? B 11 ? A 7 ? B 10 ? 1 A U 7 1_555 B A 10 1_555 A U 8 1_555 B A 9 1_555 -0.297 -1.326 3.285 -2.995 11.217 29.956 -4.295 0.032 2.647 20.746 5.540 32.079 4 AA_U7U8:A9A10_BB A 7 ? B 10 ? A 8 ? B 9 ? 1 A U 8 1_555 B A 9 1_555 A A 9 1_555 B U 8 1_555 0.257 -1.547 3.198 0.850 18.016 31.010 -4.756 -0.313 2.030 30.663 -1.447 35.762 5 AA_U8A9:U8A9_BB A 8 ? B 9 ? A 9 ? B 8 ? 1 A A 9 1_555 B U 8 1_555 A A 10 1_555 B U 7 1_555 -0.157 -1.158 3.121 1.242 3.835 31.736 -2.749 0.494 2.956 6.977 -2.259 31.985 6 AA_A9A10:U7U8_BB A 9 ? B 8 ? A 10 ? B 7 ? 1 A A 10 1_555 B U 7 1_555 A G 11 1_555 B C 6 1_555 0.200 -1.495 3.381 2.758 10.077 32.144 -4.159 0.090 2.805 17.628 -4.825 33.757 7 AA_A10G11:C6U7_BB A 10 ? B 7 ? A 11 ? B 6 ? 1 A G 11 1_555 B C 6 1_555 A U 12 1_555 B A 5 1_555 -0.496 -1.454 3.146 -1.766 6.614 33.153 -3.484 0.588 2.833 11.440 3.054 33.833 8 AA_G11U12:A5C6_BB A 11 ? B 6 ? A 12 ? B 5 ? 1 A U 12 1_555 B A 5 1_555 A C 13 1_555 B LCG 4 1_555 0.591 -1.288 3.164 -0.234 4.963 33.075 -3.008 -1.063 2.941 8.656 0.407 33.436 9 AA_U12C13:LCG4A5_BB A 12 ? B 5 ? A 13 ? B 4 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Science Foundation (NSF, United States)' 'United States' 'CHE 1607034' 1 'National Science Foundation (NSF, United States)' 'United States' 'CHE 2104708' 2 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id G46 _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id G46 _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 6C8O _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 7U87 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.023397 _atom_sites.fract_transf_matrix[1][2] 0.013508 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.027016 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012008 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.pdbx_scat_Z _atom_type.pdbx_N_electrons _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c C 6 6 2.310 20.844 1.020 10.208 1.589 0.569 0.865 51.651 0.216 H 1 1 0.493 10.511 0.323 26.126 0.140 3.142 0.041 57.800 0.003 MG 12 12 5.427 2.828 2.176 79.261 1.228 0.381 2.310 7.194 0.859 N 7 7 12.222 0.006 3.135 9.893 2.014 28.997 1.167 0.583 -11.538 O 8 8 3.049 13.277 2.287 5.701 1.546 0.324 0.867 32.909 0.251 P 15 15 6.435 1.907 4.179 27.157 1.780 0.526 1.491 68.164 1.115 S 16 16 6.905 1.468 5.203 22.215 1.438 0.254 1.586 56.172 0.867 # loop_