HEADER VIRAL PROTEIN/IMMUNE SYSTEM 16-MAR-22 7UCE TITLE STRUCTURE OF THE ANTI-HIV-1 NEUTRALIZING ANTIBODY BG24 FAB FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: BG24 FAB LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: BG24 FAB HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL: EXPI293; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM_CELL: EXPI293 KEYWDS BROADLY NEUTRALIZING ANTIBODY, BNAB, HIV-1, CD4 BINDING SITE, VH1-2, KEYWDS 2 VRC01-CLASS, ANTIVIRAL PROTEIN, VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.O.BARNES,P.J.BJORKMAN REVDAT 5 13-NOV-24 7UCE 1 REMARK REVDAT 4 18-OCT-23 7UCE 1 REMARK REVDAT 3 05-OCT-22 7UCE 1 COMPND REVDAT 2 24-AUG-22 7UCE 1 JRNL REVDAT 1 17-AUG-22 7UCE 0 JRNL AUTH C.O.BARNES,T.SCHOOFS,P.N.P.GNANAPRAGASAM,J.GOLIJANIN, JRNL AUTH 2 K.E.HUEY-TUBMAN,H.GRUELL,P.SCHOMMERS,N.SUH-TOMA,Y.E.LEE, JRNL AUTH 3 J.C.CETRULO LORENZI,A.PIECHOCKA-TROCHA,J.F.SCHEID, JRNL AUTH 4 A.P.WEST JR.,B.D.WALKER,M.S.SEAMAN,F.KLEIN,M.C.NUSSENZWEIG, JRNL AUTH 5 P.J.BJORKMAN JRNL TITL A NATURALLY ARISING BROAD AND POTENT CD4-BINDING SITE JRNL TITL 2 ANTIBODY WITH LOW SOMATIC MUTATION. JRNL REF SCI ADV V. 8 P8155 2022 JRNL REFN ESSN 2375-2548 JRNL PMID 35960796 JRNL DOI 10.1126/SCIADV.ABP8155 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 22755 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.780 REMARK 3 FREE R VALUE TEST SET COUNT : 1088 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.3000 - 4.5000 1.00 2853 142 0.1447 0.1631 REMARK 3 2 4.5000 - 3.5700 1.00 2749 126 0.1775 0.2421 REMARK 3 3 3.5700 - 3.1200 1.00 2680 163 0.2287 0.2596 REMARK 3 4 3.1200 - 2.8300 1.00 2721 113 0.2659 0.3631 REMARK 3 5 2.8300 - 2.6300 0.99 2712 97 0.2897 0.3885 REMARK 3 6 2.6300 - 2.4800 1.00 2681 146 0.3061 0.3598 REMARK 3 7 2.4800 - 2.3500 0.99 2635 152 0.3218 0.3933 REMARK 3 8 2.3500 - 2.2500 0.99 2636 149 0.3443 0.4068 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.289 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.204 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.93 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3316 REMARK 3 ANGLE : 0.865 4519 REMARK 3 CHIRALITY : 0.048 512 REMARK 3 PLANARITY : 0.005 578 REMARK 3 DIHEDRAL : 6.239 469 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 2 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7184 39.6630 62.2967 REMARK 3 T TENSOR REMARK 3 T11: 0.6021 T22: 0.8397 REMARK 3 T33: 0.5318 T12: -0.0763 REMARK 3 T13: -0.0668 T23: -0.0243 REMARK 3 L TENSOR REMARK 3 L11: 4.7287 L22: 6.5138 REMARK 3 L33: 3.0233 L12: 1.6596 REMARK 3 L13: -1.5220 L23: 1.3551 REMARK 3 S TENSOR REMARK 3 S11: 0.3527 S12: 0.7896 S13: -0.0689 REMARK 3 S21: -0.0893 S22: -0.2974 S23: 0.0849 REMARK 3 S31: -0.0027 S32: -0.7356 S33: 0.0053 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 18 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.6311 41.8928 70.1103 REMARK 3 T TENSOR REMARK 3 T11: 0.4589 T22: 0.5754 REMARK 3 T33: 0.5296 T12: 0.0386 REMARK 3 T13: -0.0067 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 4.7978 L22: 4.0971 REMARK 3 L33: 3.8162 L12: 0.0726 REMARK 3 L13: 2.2861 L23: -0.9829 REMARK 3 S TENSOR REMARK 3 S11: 0.0645 S12: 0.1047 S13: -0.1300 REMARK 3 S21: 0.1204 S22: 0.4077 S23: 0.2718 REMARK 3 S31: -0.0396 S32: -0.2951 S33: -0.5023 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 46 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3818 48.3332 77.6847 REMARK 3 T TENSOR REMARK 3 T11: 0.7580 T22: 0.8430 REMARK 3 T33: 0.6812 T12: 0.1285 REMARK 3 T13: 0.0985 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 7.8928 L22: 8.8217 REMARK 3 L33: 4.3405 L12: -3.2757 REMARK 3 L13: 3.5121 L23: -5.8088 REMARK 3 S TENSOR REMARK 3 S11: -0.8018 S12: -1.1647 S13: 0.4413 REMARK 3 S21: 1.6943 S22: 0.8832 S23: 0.1310 REMARK 3 S31: -1.0590 S32: -1.5610 S33: -0.2819 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 58 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.3180 41.2698 68.8235 REMARK 3 T TENSOR REMARK 3 T11: 0.4525 T22: 0.7012 REMARK 3 T33: 0.5284 T12: -0.0288 REMARK 3 T13: 0.0325 T23: 0.0342 REMARK 3 L TENSOR REMARK 3 L11: 6.0652 L22: 2.5074 REMARK 3 L33: 5.9466 L12: 0.7742 REMARK 3 L13: -0.1828 L23: -1.7088 REMARK 3 S TENSOR REMARK 3 S11: -0.0215 S12: -0.3009 S13: -0.3101 REMARK 3 S21: -0.0006 S22: 0.2383 S23: 0.4527 REMARK 3 S31: 0.0305 S32: -0.9336 S33: -0.2106 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 94 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6015 46.9972 45.6514 REMARK 3 T TENSOR REMARK 3 T11: 0.6179 T22: 0.7513 REMARK 3 T33: 0.6360 T12: 0.1400 REMARK 3 T13: -0.1152 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.3587 L22: 1.0502 REMARK 3 L33: 8.3379 L12: -0.2428 REMARK 3 L13: -2.0546 L23: -0.2124 REMARK 3 S TENSOR REMARK 3 S11: 0.2308 S12: 0.4319 S13: 0.0929 REMARK 3 S21: -0.4559 S22: 0.0942 S23: 0.4982 REMARK 3 S31: -1.0680 S32: -1.9008 S33: -0.3132 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 112 THROUGH 183 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.9636 39.2301 35.1360 REMARK 3 T TENSOR REMARK 3 T11: 0.5286 T22: 0.4511 REMARK 3 T33: 0.3879 T12: 0.0260 REMARK 3 T13: -0.1430 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 5.1090 L22: 2.8379 REMARK 3 L33: 6.1526 L12: -0.4548 REMARK 3 L13: -1.1563 L23: 0.0734 REMARK 3 S TENSOR REMARK 3 S11: -0.2393 S12: -0.0781 S13: -0.1450 REMARK 3 S21: 0.0717 S22: 0.2551 S23: -0.1567 REMARK 3 S31: 0.5119 S32: -0.0070 S33: -0.0680 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 184 THROUGH 202 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1800 37.7357 33.2481 REMARK 3 T TENSOR REMARK 3 T11: 0.8372 T22: 0.7227 REMARK 3 T33: 0.5607 T12: 0.0504 REMARK 3 T13: -0.1849 T23: -0.0327 REMARK 3 L TENSOR REMARK 3 L11: 8.2530 L22: 3.3885 REMARK 3 L33: 8.0228 L12: -0.1165 REMARK 3 L13: -5.6247 L23: 0.6481 REMARK 3 S TENSOR REMARK 3 S11: -0.1238 S12: 0.2327 S13: -0.7029 REMARK 3 S21: 0.0329 S22: -0.2001 S23: 0.2852 REMARK 3 S31: -0.0735 S32: -1.3433 S33: 0.2171 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.6183 47.1215 71.5182 REMARK 3 T TENSOR REMARK 3 T11: 0.4803 T22: 0.4746 REMARK 3 T33: 0.5052 T12: -0.0616 REMARK 3 T13: -0.0477 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 4.1657 L22: 3.4161 REMARK 3 L33: 6.3300 L12: -2.3366 REMARK 3 L13: -1.2934 L23: 1.7248 REMARK 3 S TENSOR REMARK 3 S11: 0.2427 S12: -0.5871 S13: 0.2615 REMARK 3 S21: 0.0205 S22: 0.0944 S23: -0.3512 REMARK 3 S31: -0.6366 S32: 0.4918 S33: -0.2343 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 34 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.8356 37.9891 71.8923 REMARK 3 T TENSOR REMARK 3 T11: 0.4884 T22: 0.3147 REMARK 3 T33: 0.5035 T12: 0.0520 REMARK 3 T13: -0.0108 T23: 0.0479 REMARK 3 L TENSOR REMARK 3 L11: 6.1672 L22: 4.2992 REMARK 3 L33: 7.0044 L12: -0.3744 REMARK 3 L13: -1.0816 L23: 1.7901 REMARK 3 S TENSOR REMARK 3 S11: 0.3093 S12: 0.0765 S13: -0.5362 REMARK 3 S21: 0.0709 S22: 0.1152 S23: 0.2102 REMARK 3 S31: 0.4869 S32: -0.2297 S33: -0.3978 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 58 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.1245 33.4707 72.8078 REMARK 3 T TENSOR REMARK 3 T11: 0.5861 T22: 0.4879 REMARK 3 T33: 0.5932 T12: 0.1236 REMARK 3 T13: 0.0349 T23: 0.1268 REMARK 3 L TENSOR REMARK 3 L11: 6.3804 L22: 5.3051 REMARK 3 L33: 6.3165 L12: -2.6567 REMARK 3 L13: 0.1045 L23: 1.0028 REMARK 3 S TENSOR REMARK 3 S11: 0.1544 S12: -0.0612 S13: -0.9230 REMARK 3 S21: -0.1416 S22: -0.2653 S23: 0.0282 REMARK 3 S31: 0.7762 S32: 0.4546 S33: 0.1950 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 74 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.1324 42.6729 70.9419 REMARK 3 T TENSOR REMARK 3 T11: 0.4333 T22: 0.3555 REMARK 3 T33: 0.4347 T12: -0.0001 REMARK 3 T13: -0.0341 T23: 0.0695 REMARK 3 L TENSOR REMARK 3 L11: 5.4403 L22: 3.7700 REMARK 3 L33: 5.7105 L12: -0.6179 REMARK 3 L13: -2.3454 L23: 0.7442 REMARK 3 S TENSOR REMARK 3 S11: 0.0848 S12: -0.3052 S13: -0.0266 REMARK 3 S21: 0.2438 S22: -0.1505 S23: 0.0576 REMARK 3 S31: -0.1722 S32: 0.3879 S33: 0.0473 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 122 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.7904 47.2956 31.6670 REMARK 3 T TENSOR REMARK 3 T11: 0.6770 T22: 0.3542 REMARK 3 T33: 0.5444 T12: -0.0393 REMARK 3 T13: -0.1094 T23: -0.0403 REMARK 3 L TENSOR REMARK 3 L11: 3.0709 L22: 3.3362 REMARK 3 L33: 4.9340 L12: 0.3924 REMARK 3 L13: -0.5833 L23: 1.2616 REMARK 3 S TENSOR REMARK 3 S11: -0.0873 S12: 0.7108 S13: -0.3393 REMARK 3 S21: -0.3958 S22: 0.1629 S23: 0.4070 REMARK 3 S31: -0.1128 S32: 0.0872 S33: -0.0825 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 156 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.6436 52.0353 37.3530 REMARK 3 T TENSOR REMARK 3 T11: 0.7222 T22: 0.4777 REMARK 3 T33: 0.4974 T12: 0.0608 REMARK 3 T13: -0.1538 T23: -0.0473 REMARK 3 L TENSOR REMARK 3 L11: 7.1254 L22: 0.7265 REMARK 3 L33: 4.7589 L12: 0.6004 REMARK 3 L13: 1.7031 L23: 1.8299 REMARK 3 S TENSOR REMARK 3 S11: -0.3290 S12: -0.2570 S13: 0.4303 REMARK 3 S21: 0.2729 S22: 0.1140 S23: -0.1041 REMARK 3 S31: -0.5442 S32: 0.0145 S33: 0.1939 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 196 THROUGH 210 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.0854 57.8774 25.5088 REMARK 3 T TENSOR REMARK 3 T11: 1.0955 T22: 0.6540 REMARK 3 T33: 0.6884 T12: -0.0669 REMARK 3 T13: -0.2005 T23: 0.0549 REMARK 3 L TENSOR REMARK 3 L11: 5.0511 L22: 1.8272 REMARK 3 L33: 3.1097 L12: -0.1171 REMARK 3 L13: 2.2812 L23: 0.3547 REMARK 3 S TENSOR REMARK 3 S11: -0.5863 S12: 0.7119 S13: 1.0556 REMARK 3 S21: -0.5591 S22: -0.1672 S23: 0.1493 REMARK 3 S31: -0.2670 S32: 0.2060 S33: 0.6208 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 211 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.4844 53.1014 29.0468 REMARK 3 T TENSOR REMARK 3 T11: 0.9395 T22: 0.8031 REMARK 3 T33: 0.5332 T12: -0.1147 REMARK 3 T13: -0.0513 T23: 0.0311 REMARK 3 L TENSOR REMARK 3 L11: 8.5640 L22: 3.0109 REMARK 3 L33: 9.5700 L12: 0.0686 REMARK 3 L13: 4.8285 L23: 0.9338 REMARK 3 S TENSOR REMARK 3 S11: 0.0134 S12: 1.5142 S13: 0.6964 REMARK 3 S21: -0.6802 S22: -0.1497 S23: 0.2109 REMARK 3 S31: -0.3378 S32: 0.5804 S33: 0.0103 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7UCE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAR-22. REMARK 100 THE DEPOSITION ID IS D_1000263897. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28013 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 33.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : 0.12600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.20 REMARK 200 R MERGE FOR SHELL (I) : 3.82000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4LSU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.25 M POTASSIUM CHLORIDE, 18% REMARK 280 POLYETHYLENE GLYCOL PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.82800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.82800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.30150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.21200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.30150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.21200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.82800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.30150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 59.21200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.82800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.30150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 59.21200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN L 1 REMARK 465 GLU L 203 REMARK 465 CYS L 204 REMARK 465 SER L 205 REMARK 465 CYS H 226 REMARK 465 ASP H 227 REMARK 465 LYS H 228 REMARK 465 HIS H 229 REMARK 465 HIS H 230 REMARK 465 HIS H 231 REMARK 465 HIS H 232 REMARK 465 HIS H 233 REMARK 465 HIS H 234 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR L 202 O HOH L 301 1.87 REMARK 500 OG SER L 168 O HOH L 302 1.94 REMARK 500 OG SER L 61 O HOH L 303 1.95 REMARK 500 O HOH L 318 O HOH H 317 1.95 REMARK 500 NZ LYS H 101 O HOH H 301 1.98 REMARK 500 NZ LYS H 127 O ASP H 154 2.03 REMARK 500 O TYR H 33 O HOH H 302 2.14 REMARK 500 O SER H 104 O HOH H 303 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS H 220 CB LYS H 220 CG -0.163 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS H 220 CG - CD - CE ANGL. DEV. = -24.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL L 47 -49.44 76.63 REMARK 500 ASN L 48 18.90 -141.40 REMARK 500 PHE L 87 -116.42 53.76 REMARK 500 ALA L 136 113.52 -161.72 REMARK 500 ASP L 144 -101.04 52.54 REMARK 500 ASN L 163 -2.17 67.67 REMARK 500 VAL H 100 -63.54 -136.85 REMARK 500 ASP H 154 60.69 63.94 REMARK 500 LYS H 224 -168.26 -74.81 REMARK 500 REMARK 500 REMARK: NULL DBREF 7UCE L 1 205 PDB 7UCE 7UCE 1 205 DBREF 7UCE H 1 234 PDB 7UCE 7UCE 1 234 SEQRES 1 L 205 GLN SER ALA LEU THR GLN PRO ARG SER VAL SER GLY SER SEQRES 2 L 205 PRO GLY GLN SER VAL ASN ILE SER CYS THR GLY ALA TYR SEQRES 3 L 205 SER GLY LEU GLY TRP TYR GLN GLN HIS PRO GLY ARG ALA SEQRES 4 L 205 PRO LYS LEU ILE ILE TYR GLU VAL ASN ARG ARG PRO SER SEQRES 5 L 205 GLY VAL SER ASP ARG PHE SER GLY SER LYS SER GLY ASN SEQRES 6 L 205 THR ALA SER LEU THR ILE SER GLY LEU ARG THR GLU ASP SEQRES 7 L 205 GLU ALA ASP TYR PHE CYS SER ALA PHE GLU TYR PHE GLY SEQRES 8 L 205 GLU GLY THR LYS LEU THR VAL LEU SER GLN PRO LYS ALA SEQRES 9 L 205 ALA PRO SER VAL THR LEU PHE PRO PRO SER SER GLU GLU SEQRES 10 L 205 LEU GLN ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER SEQRES 11 L 205 ASP PHE TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA SEQRES 12 L 205 ASP SER SER PRO VAL LYS ALA GLY VAL GLU THR THR THR SEQRES 13 L 205 PRO SER LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER SEQRES 14 L 205 TYR LEU SER LEU THR PRO GLU GLN TRP LYS SER HIS LYS SEQRES 15 L 205 SER TYR SER CYS GLN VAL THR HIS GLU GLY SER THR VAL SEQRES 16 L 205 GLU LYS THR VAL ALA PRO THR GLU CYS SER SEQRES 1 H 234 GLN VAL GLN LEU VAL GLN SER ARG ALA GLU VAL LYS LYS SEQRES 2 H 234 PRO GLY ALA SER VAL LYS VAL SER CYS GLU ALA SER GLY SEQRES 3 H 234 TYR ASN PHE VAL ASP HIS TYR ILE HIS TRP VAL ARG GLN SEQRES 4 H 234 ALA PRO GLY GLN ARG PRO GLN TRP VAL GLY TRP MET ASN SEQRES 5 H 234 PRO ARG GLY GLY GLY VAL ASN TYR ALA GLN ARG PHE GLN SEQRES 6 H 234 GLY ARG VAL THR MET THR ARG ASP THR SER ILE ASP THR SEQRES 7 H 234 ALA TYR MET GLN LEU ASN ARG LEU THR SER GLY ASP THR SEQRES 8 H 234 ALA VAL TYR TYR CYS ALA THR GLN VAL LYS LEU ASP SER SEQRES 9 H 234 SER ALA GLY TYR PRO PHE ASP ILE TRP GLY GLN GLY THR SEQRES 10 H 234 MET VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER SEQRES 11 H 234 VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY SEQRES 12 H 234 GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE SEQRES 13 H 234 PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU SEQRES 14 H 234 THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SEQRES 15 H 234 SER GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SEQRES 16 H 234 SER SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL SEQRES 17 H 234 ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS LYS VAL SEQRES 18 H 234 GLU PRO LYS SER CYS ASP LYS HIS HIS HIS HIS HIS HIS HET NAG A 1 14 HET NAG A 2 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 4 HOH *35(H2 O) HELIX 1 AA1 ARG L 75 GLU L 79 5 5 HELIX 2 AA2 SER L 114 ALA L 120 1 7 HELIX 3 AA3 THR L 174 SER L 180 1 7 HELIX 4 AA4 ASN H 28 HIS H 32 5 5 HELIX 5 AA5 GLN H 62 GLN H 65 5 4 HELIX 6 AA6 THR H 87 THR H 91 5 5 SHEET 1 AA1 5 SER L 9 GLY L 12 0 SHEET 2 AA1 5 THR L 94 VAL L 98 1 O THR L 97 N VAL L 10 SHEET 3 AA1 5 ALA L 80 ALA L 86 -1 N ALA L 80 O LEU L 96 SHEET 4 AA1 5 GLY L 30 GLN L 34 -1 N TYR L 32 O PHE L 83 SHEET 5 AA1 5 LYS L 41 TYR L 45 -1 O LYS L 41 N GLN L 33 SHEET 1 AA2 4 SER L 9 GLY L 12 0 SHEET 2 AA2 4 THR L 94 VAL L 98 1 O THR L 97 N VAL L 10 SHEET 3 AA2 4 ALA L 80 ALA L 86 -1 N ALA L 80 O LEU L 96 SHEET 4 AA2 4 TYR L 89 PHE L 90 -1 O TYR L 89 N ALA L 86 SHEET 1 AA3 3 VAL L 18 THR L 23 0 SHEET 2 AA3 3 THR L 66 ILE L 71 -1 O ILE L 71 N VAL L 18 SHEET 3 AA3 3 PHE L 58 SER L 63 -1 N SER L 59 O THR L 70 SHEET 1 AA4 4 SER L 107 PHE L 111 0 SHEET 2 AA4 4 ALA L 123 PHE L 132 -1 O LEU L 128 N THR L 109 SHEET 3 AA4 4 TYR L 165 LEU L 173 -1 O ALA L 167 N ILE L 129 SHEET 4 AA4 4 VAL L 152 THR L 154 -1 N GLU L 153 O TYR L 170 SHEET 1 AA5 4 SER L 107 PHE L 111 0 SHEET 2 AA5 4 ALA L 123 PHE L 132 -1 O LEU L 128 N THR L 109 SHEET 3 AA5 4 TYR L 165 LEU L 173 -1 O ALA L 167 N ILE L 129 SHEET 4 AA5 4 SER L 158 LYS L 159 -1 N SER L 158 O ALA L 166 SHEET 1 AA6 4 SER L 146 VAL L 148 0 SHEET 2 AA6 4 THR L 138 ALA L 143 -1 N ALA L 143 O SER L 146 SHEET 3 AA6 4 TYR L 184 HIS L 190 -1 O GLN L 187 N ALA L 140 SHEET 4 AA6 4 SER L 193 VAL L 199 -1 O VAL L 195 N VAL L 188 SHEET 1 AA7 4 GLN H 3 GLN H 6 0 SHEET 2 AA7 4 VAL H 18 SER H 25 -1 O GLU H 23 N VAL H 5 SHEET 3 AA7 4 THR H 78 LEU H 83 -1 O MET H 81 N VAL H 20 SHEET 4 AA7 4 VAL H 68 ASP H 73 -1 N THR H 71 O TYR H 80 SHEET 1 AA8 6 GLU H 10 LYS H 12 0 SHEET 2 AA8 6 THR H 117 VAL H 121 1 O THR H 120 N LYS H 12 SHEET 3 AA8 6 ALA H 92 THR H 98 -1 N ALA H 92 O VAL H 119 SHEET 4 AA8 6 ILE H 34 GLN H 39 -1 N HIS H 35 O ALA H 97 SHEET 5 AA8 6 GLN H 46 MET H 51 -1 O GLN H 46 N ARG H 38 SHEET 6 AA8 6 VAL H 58 TYR H 60 -1 O ASN H 59 N TRP H 50 SHEET 1 AA9 4 GLU H 10 LYS H 12 0 SHEET 2 AA9 4 THR H 117 VAL H 121 1 O THR H 120 N LYS H 12 SHEET 3 AA9 4 ALA H 92 THR H 98 -1 N ALA H 92 O VAL H 119 SHEET 4 AA9 4 ILE H 112 TRP H 113 -1 O ILE H 112 N THR H 98 SHEET 1 AB1 4 SER H 130 LEU H 134 0 SHEET 2 AB1 4 THR H 145 TYR H 155 -1 O LEU H 151 N PHE H 132 SHEET 3 AB1 4 TYR H 186 PRO H 195 -1 O VAL H 192 N LEU H 148 SHEET 4 AB1 4 VAL H 173 THR H 175 -1 N HIS H 174 O VAL H 191 SHEET 1 AB2 4 SER H 130 LEU H 134 0 SHEET 2 AB2 4 THR H 145 TYR H 155 -1 O LEU H 151 N PHE H 132 SHEET 3 AB2 4 TYR H 186 PRO H 195 -1 O VAL H 192 N LEU H 148 SHEET 4 AB2 4 VAL H 179 LEU H 180 -1 N VAL H 179 O SER H 187 SHEET 1 AB3 3 THR H 161 TRP H 164 0 SHEET 2 AB3 3 ILE H 205 HIS H 210 -1 O ASN H 207 N SER H 163 SHEET 3 AB3 3 THR H 215 LYS H 220 -1 O THR H 215 N HIS H 210 SSBOND 1 CYS L 22 CYS L 84 1555 1555 2.04 SSBOND 2 CYS L 127 CYS L 186 1555 1555 2.04 SSBOND 3 CYS H 22 CYS H 96 1555 1555 2.04 SSBOND 4 CYS H 150 CYS H 206 1555 1555 2.05 LINK ND2 ASN L 19 C1 NAG A 1 1555 1555 1.44 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.46 CISPEP 1 TYR L 133 PRO L 134 0 1.72 CISPEP 2 TYR H 108 PRO H 109 0 -0.30 CISPEP 3 PHE H 156 PRO H 157 0 -4.90 CISPEP 4 GLU H 158 PRO H 159 0 -4.44 CRYST1 66.603 118.424 119.656 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015014 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008444 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008357 0.00000