HEADER VIRAL PROTEIN 21-MAR-22 7UE1 TITLE HIV-1 INTEGRASE CATALYTIC CORE DOMAIN MUTANT (KGD) IN COMPLEX WITH TITLE 2 INHIBITOR GRL-142 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 GENE: POL; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.AOKI,H.AOKI-OGATA,H.BULUT,H.HAYASHI,D.DAVIS,K.HASEGAWA,R.YARCHOAN, AUTHOR 2 A.K.GHOSH,A.K.PAU,H.MITSUYA REVDAT 3 24-APR-24 7UE1 1 JRNL REVDAT 2 25-OCT-23 7UE1 1 REMARK REVDAT 1 22-MAR-23 7UE1 0 JRNL AUTH M.AOKI,H.AOKI-OGATA,H.BULUT,H.HAYASHI,N.TAKAMUNE, JRNL AUTH 2 N.KISHIMOTO,H.TANAKA,N.HIGASHI-KUWATA,S.I.HATTORI,D.DAS, JRNL AUTH 3 K.VENKATESWARA RAO,K.IWAMA,D.A.DAVIS,K.HASEGAWA,K.MURAYAMA, JRNL AUTH 4 R.YARCHOAN,A.K.GHOSH,A.K.PAU,S.MACHIDA,S.MISUMI,H.MITSUYA JRNL TITL GRL-142 BINDS TO AND IMPAIRS HIV-1 INTEGRASE NUCLEAR JRNL TITL 2 LOCALIZATION SIGNAL AND POTENTLY SUPPRESSES HIGHLY JRNL TITL 3 INSTI-RESISTANT HIV-1 VARIANTS. JRNL REF SCI ADV V. 9 G2955 2023 JRNL REFN ESSN 2375-2548 JRNL PMID 37436982 JRNL DOI 10.1126/SCIADV.ADG2955 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 86.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 8961 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.317 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.690 REMARK 3 FREE R VALUE TEST SET COUNT : 420 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 86.4900 - 4.3300 1.00 2965 132 0.1950 0.2883 REMARK 3 2 4.3300 - 3.4300 1.00 2803 145 0.2280 0.3168 REMARK 3 3 3.4300 - 3.0000 1.00 2773 143 0.3413 0.4204 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.480 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 38.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 89.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 112.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 57 THROUGH 187 OR REMARK 3 RESID 193 THROUGH 208)) REMARK 3 SELECTION : (CHAIN B AND (RESID 57 THROUGH 138 OR REMARK 3 RESID 151 THROUGH 208)) REMARK 3 ATOM PAIRS NUMBER : 800 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7UE1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-MAR-22. REMARK 100 THE DEPOSITION ID IS D_1000263942. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAY-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8978 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 86.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 14.07 REMARK 200 R MERGE (I) : 0.13200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.8600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.52 REMARK 200 R MERGE FOR SHELL (I) : 1.30700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.110 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3L3U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL PH 8.5, 2% POLYETHYLENE REMARK 280 GLYCOL (PEG) 400, AND 2 M LI2SO4, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 55.68400 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 55.68400 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 68.64400 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 55.68400 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 55.68400 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 68.64400 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 55.68400 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 55.68400 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 68.64400 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 55.68400 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 55.68400 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 68.64400 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 55.68400 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 55.68400 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 68.64400 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 55.68400 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 55.68400 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 68.64400 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 55.68400 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 55.68400 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 68.64400 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 55.68400 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 55.68400 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 68.64400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 B 302 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 47 REMARK 465 SER A 48 REMARK 465 HIS A 49 REMARK 465 MET A 50 REMARK 465 HIS A 51 REMARK 465 GLY A 52 REMARK 465 GLN A 53 REMARK 465 VAL A 54 REMARK 465 ASP A 55 REMARK 465 CYS A 56 REMARK 465 PHE A 139 REMARK 465 SER A 140 REMARK 465 ILE A 141 REMARK 465 PRO A 142 REMARK 465 TYR A 143 REMARK 465 ASN A 144 REMARK 465 PRO A 145 REMARK 465 GLN A 146 REMARK 465 SER A 147 REMARK 465 ARG A 148 REMARK 465 GLY A 149 REMARK 465 VAL A 150 REMARK 465 GLN A 209 REMARK 465 THR A 210 REMARK 465 LYS A 211 REMARK 465 GLU A 212 REMARK 465 GLY B 47 REMARK 465 SER B 48 REMARK 465 HIS B 49 REMARK 465 MET B 50 REMARK 465 HIS B 51 REMARK 465 GLY B 52 REMARK 465 GLN B 53 REMARK 465 VAL B 54 REMARK 465 ASP B 55 REMARK 465 CYS B 56 REMARK 465 LYS B 188 REMARK 465 GLY B 189 REMARK 465 GLY B 190 REMARK 465 ILE B 191 REMARK 465 GLY B 192 REMARK 465 THR B 210 REMARK 465 LYS B 211 REMARK 465 GLU B 212 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O1 SO4 B 302 O4 SO4 B 302 16555 1.06 REMARK 500 O2 SO4 B 302 O4 SO4 B 302 16555 1.44 REMARK 500 O2 SO4 B 302 O3 SO4 B 302 16555 1.44 REMARK 500 S SO4 B 302 O3 SO4 B 302 16555 1.45 REMARK 500 S SO4 B 302 O1 SO4 B 302 16555 1.45 REMARK 500 S SO4 B 302 O4 SO4 B 302 16555 1.46 REMARK 500 S SO4 B 302 O2 SO4 B 302 16555 1.46 REMARK 500 O ILE B 135 H26 7OA B 301 15455 1.59 REMARK 500 O1 SO4 B 302 O1 SO4 B 302 16555 1.85 REMARK 500 OG1 THR B 93 O1 SO4 B 302 16555 1.89 REMARK 500 O3 SO4 B 302 O4 SO4 B 302 16555 1.98 REMARK 500 OE2 GLU A 170 OG SER B 119 16555 2.02 REMARK 500 O1 SO4 B 302 O3 SO4 B 302 16555 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 130 CB CYS A 130 SG -0.109 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 186 36.47 -96.16 REMARK 500 ILE B 73 95.44 54.05 REMARK 500 THR B 115 -167.78 -100.19 REMARK 500 ASN B 117 -0.99 83.97 REMARK 500 REMARK 500 REMARK: NULL DBREF 7UE1 A 50 212 UNP Q9YUI7 Q9YUI7_9HIV1 50 212 DBREF 7UE1 B 50 212 UNP Q9YUI7 Q9YUI7_9HIV1 50 212 SEQADV 7UE1 GLY A 47 UNP Q9YUI7 EXPRESSION TAG SEQADV 7UE1 SER A 48 UNP Q9YUI7 EXPRESSION TAG SEQADV 7UE1 HIS A 49 UNP Q9YUI7 EXPRESSION TAG SEQADV 7UE1 ILE A 74 UNP Q9YUI7 LEU 74 CONFLICT SEQADV 7UE1 VAL A 121 UNP Q9YUI7 PHE 121 CONFLICT SEQADV 7UE1 ALA A 125 UNP Q9YUI7 THR 125 CONFLICT SEQADV 7UE1 ARG A 148 UNP Q9YUI7 GLN 148 CONFLICT SEQADV 7UE1 VAL A 151 UNP Q9YUI7 ILE 151 CONFLICT SEQADV 7UE1 HIS A 185 UNP Q9YUI7 PHE 185 CONFLICT SEQADV 7UE1 LEU A 208 UNP Q9YUI7 ILE 208 CONFLICT SEQADV 7UE1 GLY B 47 UNP Q9YUI7 EXPRESSION TAG SEQADV 7UE1 SER B 48 UNP Q9YUI7 EXPRESSION TAG SEQADV 7UE1 HIS B 49 UNP Q9YUI7 EXPRESSION TAG SEQADV 7UE1 ILE B 74 UNP Q9YUI7 LEU 74 CONFLICT SEQADV 7UE1 VAL B 121 UNP Q9YUI7 PHE 121 CONFLICT SEQADV 7UE1 ALA B 125 UNP Q9YUI7 THR 125 CONFLICT SEQADV 7UE1 ARG B 148 UNP Q9YUI7 GLN 148 CONFLICT SEQADV 7UE1 VAL B 151 UNP Q9YUI7 ILE 151 CONFLICT SEQADV 7UE1 HIS B 185 UNP Q9YUI7 PHE 185 CONFLICT SEQADV 7UE1 LEU B 208 UNP Q9YUI7 ILE 208 CONFLICT SEQRES 1 A 166 GLY SER HIS MET HIS GLY GLN VAL ASP CYS SER PRO GLY SEQRES 2 A 166 ILE TRP GLN LEU ASP CYS THR HIS LEU GLU GLY LYS VAL SEQRES 3 A 166 ILE ILE VAL ALA VAL HIS VAL ALA SER GLY TYR ILE GLU SEQRES 4 A 166 ALA GLU VAL ILE PRO ALA GLU THR GLY GLN GLU THR ALA SEQRES 5 A 166 TYR PHE LEU LEU LYS LEU ALA GLY ARG TRP PRO VAL LYS SEQRES 6 A 166 THR VAL HIS THR ASP ASN GLY SER ASN VAL THR SER THR SEQRES 7 A 166 ALA VAL LYS ALA ALA CYS TRP TRP ALA GLY ILE LYS GLN SEQRES 8 A 166 GLU PHE SER ILE PRO TYR ASN PRO GLN SER ARG GLY VAL SEQRES 9 A 166 VAL GLU SER MET ASN LYS GLU LEU LYS LYS ILE ILE GLY SEQRES 10 A 166 GLN VAL ARG ASP GLN ALA GLU HIS LEU LYS THR ALA VAL SEQRES 11 A 166 GLN MET ALA VAL PHE ILE HIS ASN HIS LYS ARG LYS GLY SEQRES 12 A 166 GLY ILE GLY GLY TYR SER ALA GLY GLU ARG ILE VAL ASP SEQRES 13 A 166 ILE ILE ALA THR ASP LEU GLN THR LYS GLU SEQRES 1 B 166 GLY SER HIS MET HIS GLY GLN VAL ASP CYS SER PRO GLY SEQRES 2 B 166 ILE TRP GLN LEU ASP CYS THR HIS LEU GLU GLY LYS VAL SEQRES 3 B 166 ILE ILE VAL ALA VAL HIS VAL ALA SER GLY TYR ILE GLU SEQRES 4 B 166 ALA GLU VAL ILE PRO ALA GLU THR GLY GLN GLU THR ALA SEQRES 5 B 166 TYR PHE LEU LEU LYS LEU ALA GLY ARG TRP PRO VAL LYS SEQRES 6 B 166 THR VAL HIS THR ASP ASN GLY SER ASN VAL THR SER THR SEQRES 7 B 166 ALA VAL LYS ALA ALA CYS TRP TRP ALA GLY ILE LYS GLN SEQRES 8 B 166 GLU PHE SER ILE PRO TYR ASN PRO GLN SER ARG GLY VAL SEQRES 9 B 166 VAL GLU SER MET ASN LYS GLU LEU LYS LYS ILE ILE GLY SEQRES 10 B 166 GLN VAL ARG ASP GLN ALA GLU HIS LEU LYS THR ALA VAL SEQRES 11 B 166 GLN MET ALA VAL PHE ILE HIS ASN HIS LYS ARG LYS GLY SEQRES 12 B 166 GLY ILE GLY GLY TYR SER ALA GLY GLU ARG ILE VAL ASP SEQRES 13 B 166 ILE ILE ALA THR ASP LEU GLN THR LYS GLU HET 7OA B 301 88 HET SO4 B 302 5 HETNAM 7OA (3S,3AR,5R,7AS,8S)-HEXAHYDRO-4H-3,5-METHANOFURO[2,3- HETNAM 2 7OA B]PYRAN-8-YL [(2S,3R)-4-[{[2-(CYCLOPROPYLAMINO)-1,3- HETNAM 3 7OA BENZOTHIAZOL-6-YL]SULFONYL}(2-METHYLPROPYL)AMINO]-1- HETNAM 4 7OA (3,5-DIFLUOROPHENYL)-3-HYDROXYBUTAN-2-YL]CARBAMATE HETNAM SO4 SULFATE ION FORMUL 3 7OA C33 H40 F2 N4 O7 S2 FORMUL 4 SO4 O4 S 2- HELIX 1 AA1 GLY A 94 TRP A 108 1 15 HELIX 2 AA2 SER A 123 GLY A 134 1 12 HELIX 3 AA3 GLU A 152 ARG A 166 1 15 HELIX 4 AA4 ASP A 167 ALA A 169 5 3 HELIX 5 AA5 HIS A 171 LYS A 186 1 16 HELIX 6 AA6 SER A 195 LEU A 208 1 14 HELIX 7 AA7 THR B 93 TRP B 108 1 16 HELIX 8 AA8 SER B 123 GLY B 134 1 12 HELIX 9 AA9 SER B 140 TYR B 143 5 4 HELIX 10 AB1 ASN B 144 VAL B 165 1 22 HELIX 11 AB2 ARG B 166 ALA B 169 5 4 HELIX 12 AB3 HIS B 171 LYS B 186 1 16 HELIX 13 AB4 SER B 195 LEU B 208 1 14 SHEET 1 AA1 5 ILE A 84 ILE A 89 0 SHEET 2 AA1 5 LYS A 71 HIS A 78 -1 N ALA A 76 O GLU A 85 SHEET 3 AA1 5 ILE A 60 LEU A 68 -1 N THR A 66 O ILE A 73 SHEET 4 AA1 5 THR A 112 VAL A 113 1 O THR A 112 N TRP A 61 SHEET 5 AA1 5 LYS A 136 GLN A 137 1 O LYS A 136 N VAL A 113 SHEET 1 AA2 5 ILE B 84 GLU B 87 0 SHEET 2 AA2 5 ILE B 74 HIS B 78 -1 N ALA B 76 O GLU B 85 SHEET 3 AA2 5 ILE B 60 CYS B 65 -1 N ASP B 64 O VAL B 75 SHEET 4 AA2 5 THR B 112 HIS B 114 1 O HIS B 114 N TRP B 61 SHEET 5 AA2 5 LYS B 136 GLU B 138 1 O LYS B 136 N VAL B 113 CRYST1 111.368 111.368 137.288 90.00 90.00 90.00 I 4 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008979 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008979 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007284 0.00000