HEADER LYASE 22-MAR-22 7UF2 TITLE RIBB FROM VIBRIO CHOLERA BOUND WITH D-XYLULOSE-5-PHOSPHATE (D-XY5P) TITLE 2 AND MANGANESE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3,4-DIHYDROXY-2-BUTANONE 4-PHOSPHATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DHBP SYNTHASE; COMPND 5 EC: 4.1.99.12; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 GENE: RIBB, D6U24_02240, ERS013198_00268, ERS013199_01247, SOURCE 5 ERS013202_00910, ERS013207_00669, FXE67_08125; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RIBB, RIBOFLAVIN, 3, 4-DIHYDROXY-2-BUTANONE 4-PHOSPHATE SYNTHASE, KEYWDS 2 LYASE EXPDTA X-RAY DIFFRACTION AUTHOR N.KENJIC,K.M.MENEELY,A.L.LAMB REVDAT 3 18-OCT-23 7UF2 1 REMARK REVDAT 2 03-AUG-22 7UF2 1 JRNL REVDAT 1 20-JUL-22 7UF2 0 JRNL AUTH N.KENJIC,K.M.MENEELY,D.J.WHERRITT,M.C.DENLER,T.A.JACKSON, JRNL AUTH 2 G.R.MORAN,A.L.LAMB JRNL TITL EVIDENCE FOR THE CHEMICAL MECHANISM OF RIBB JRNL TITL 2 (3,4-DIHYDROXY-2-BUTANONE 4-PHOSPHATE SYNTHASE) OF JRNL TITL 3 RIBOFLAVIN BIOSYNTHESIS. JRNL REF J.AM.CHEM.SOC. V. 144 12769 2022 JRNL REFN ESSN 1520-5126 JRNL PMID 35802469 JRNL DOI 10.1021/JACS.2C03376 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 15151 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1515 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.5500 - 4.4500 0.98 1313 146 0.1591 0.1878 REMARK 3 2 4.4400 - 3.5300 0.99 1263 141 0.1530 0.2113 REMARK 3 3 3.5300 - 3.0800 0.99 1251 139 0.1707 0.2212 REMARK 3 4 3.0800 - 2.8000 1.00 1240 137 0.1705 0.2537 REMARK 3 5 2.8000 - 2.6000 0.99 1225 137 0.1592 0.1930 REMARK 3 6 2.6000 - 2.4500 0.99 1248 139 0.1676 0.2188 REMARK 3 7 2.4500 - 2.3200 0.99 1222 135 0.1678 0.2627 REMARK 3 8 2.3200 - 2.2200 0.99 1217 134 0.1645 0.2488 REMARK 3 9 2.2200 - 2.1400 0.99 1237 138 0.1639 0.2291 REMARK 3 10 2.1400 - 2.0600 0.99 1213 135 0.1659 0.2581 REMARK 3 11 2.0600 - 2.0000 0.99 1207 134 0.1958 0.2416 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.845 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 1655 REMARK 3 ANGLE : 1.248 2245 REMARK 3 CHIRALITY : 0.055 267 REMARK 3 PLANARITY : 0.007 297 REMARK 3 DIHEDRAL : 17.245 629 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7UF2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-22. REMARK 100 THE DEPOSITION ID IS D_1000264068. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15176 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 39.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4P8E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M LITHIUM ACETATE, 12-18% W/V REMARK 280 PEG3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.67000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.67000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.51450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.55300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.51450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.55300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 45.67000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.51450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 39.55300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 45.67000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.51450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 39.55300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 45.67000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 450 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 498 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 87 REMARK 465 ASN A 88 REMARK 465 ASN A 89 REMARK 465 SER A 90 REMARK 465 ALA A 91 REMARK 465 ASN A 92 REMARK 465 GLN A 93 REMARK 465 ALA A 218 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H7A 5SP A 301 MN MN A 302 1.29 REMARK 500 O HOH A 487 O HOH A 494 1.83 REMARK 500 O HOH A 403 O HOH A 458 1.91 REMARK 500 O HOH A 403 O HOH A 411 1.94 REMARK 500 OE2 GLU A 18 O HOH A 401 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 214 CB - CG - OD1 ANGL. DEV. = -10.2 DEGREES REMARK 500 ASP A 214 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 8 -39.70 -38.99 REMARK 500 ARG A 38 -116.71 -102.66 REMARK 500 ARG A 38 -117.08 -102.66 REMARK 500 THR A 107 -96.82 -108.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 39 OE1 REMARK 620 2 GLU A 39 OE1 21.0 REMARK 620 3 HIS A 154 ND1 103.1 102.5 REMARK 620 4 5SP A 301 O10 73.4 92.2 68.2 REMARK 620 5 5SP A 301 O14 110.3 109.9 146.4 118.1 REMARK 620 6 HOH A 435 O 107.8 87.0 95.5 163.2 77.7 REMARK 620 N 1 2 3 4 5 DBREF1 7UF2 A 1 218 UNP A0A0H6NPW4_VIBCL DBREF2 7UF2 A A0A0H6NPW4 1 218 SEQRES 1 A 218 MET ASN GLN SER SER LEU LEU ALA GLU PHE GLY ASP PRO SEQRES 2 A 218 ILE THR ARG VAL GLU ASN ALA LEU GLN ALA LEU ARG GLU SEQRES 3 A 218 GLY ARG GLY VAL LEU LEU LEU ASP ASP GLU ASP ARG GLU SEQRES 4 A 218 ASN GLU GLY ASP ILE ILE TYR ALA VAL GLU SER LEU THR SEQRES 5 A 218 THR ALA GLN MET ALA LEU MET ILE ARG GLU CYS SER GLY SEQRES 6 A 218 ILE VAL CYS LEU CYS LEU THR GLU ALA GLN ALA ASP ARG SEQRES 7 A 218 LEU ALA LEU PRO PRO MET VAL VAL ASN ASN ASN SER ALA SEQRES 8 A 218 ASN GLN THR ALA PHE THR VAL SER ILE GLU ALA LYS HIS SEQRES 9 A 218 GLY VAL THR THR GLY VAL SER ALA GLN ASP ARG VAL THR SEQRES 10 A 218 THR ILE LYS THR ALA ALA ASN PRO GLN ALA LYS PRO GLU SEQRES 11 A 218 ASP LEU ALA ARG PRO GLY HIS VAL PHE PRO LEU ARG ALA SEQRES 12 A 218 ARG ALA GLY GLY VAL LEU ALA ARG ARG GLY HIS THR GLU SEQRES 13 A 218 GLY THR VAL ASP LEU MET GLN MET ALA GLY LEU GLN PRO SEQRES 14 A 218 ALA GLY VAL LEU CYS GLU LEU THR ASN PRO ASP GLY SER SEQRES 15 A 218 MET ALA LYS THR PRO GLU ILE ILE GLU PHE GLY LYS LEU SEQRES 16 A 218 HIS ASN MET PRO VAL LEU THR ILE GLU ASP MET VAL GLN SEQRES 17 A 218 TYR ARG ILE GLN PHE ASP LEU LYS LEU ALA HET 5SP A 301 23 HET MN A 302 1 HET EDO A 303 10 HET EDO A 304 10 HETNAM 5SP 5-O-PHOSPHONO-D-XYLULOSE HETNAM MN MANGANESE (II) ION HETNAM EDO 1,2-ETHANEDIOL HETSYN 5SP D-XYLULOSE 5-PHOSPHATE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 5SP C5 H11 O8 P FORMUL 3 MN MN 2+ FORMUL 4 EDO 2(C2 H6 O2) FORMUL 6 HOH *106(H2 O) HELIX 1 AA1 ASN A 2 ALA A 8 1 7 HELIX 2 AA2 GLU A 9 GLY A 11 5 3 HELIX 3 AA3 ASP A 12 GLU A 26 1 15 HELIX 4 AA4 GLU A 49 LEU A 51 5 3 HELIX 5 AA5 THR A 52 CYS A 63 1 12 HELIX 6 AA6 THR A 72 LEU A 79 1 8 HELIX 7 AA7 SER A 111 ASN A 124 1 14 HELIX 8 AA8 LYS A 128 GLU A 130 5 3 HELIX 9 AA9 GLY A 146 ALA A 150 5 5 HELIX 10 AB1 GLY A 153 ALA A 165 1 13 HELIX 11 AB2 LYS A 185 ASN A 197 1 13 HELIX 12 AB3 ILE A 203 PHE A 213 1 11 SHEET 1 AA1 7 ILE A 100 ALA A 102 0 SHEET 2 AA1 7 LEU A 132 ARG A 142 -1 O ALA A 133 N GLU A 101 SHEET 3 AA1 7 CYS A 68 LEU A 71 1 N LEU A 69 O LEU A 141 SHEET 4 AA1 7 GLY A 171 GLU A 175 -1 O GLY A 171 N CYS A 70 SHEET 5 AA1 7 GLY A 42 ALA A 47 -1 N ILE A 44 O CYS A 174 SHEET 6 AA1 7 VAL A 30 LEU A 33 -1 N VAL A 30 O ILE A 45 SHEET 7 AA1 7 VAL A 200 THR A 202 1 O LEU A 201 N LEU A 33 LINK OE1AGLU A 39 MN MN A 302 1555 1555 2.21 LINK OE1BGLU A 39 MN MN A 302 1555 1555 2.06 LINK ND1 HIS A 154 MN MN A 302 1555 1555 2.38 LINK O10 5SP A 301 MN MN A 302 1555 1555 2.79 LINK O14 5SP A 301 MN MN A 302 1555 1555 2.75 LINK MN MN A 302 O HOH A 435 1555 1555 2.36 CISPEP 1 ARG A 134 PRO A 135 0 2.95 CRYST1 61.029 79.106 91.340 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016386 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012641 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010948 0.00000