HEADER VIRUS 30-MAR-22 7UJ3 TITLE CRYSTAL STRUCTURE OF HUMAN RESPIRATORY SYNCYTIAL VIRUS F VARIANT TITLE 2 (CONSTRUCT PXCS847A) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RSV VARIANT (CONSTRUCT PXCS847A) F2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RSV VARIANT (CONSTRUCT PXCS847A) F1; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RESPIRATORY SYNCYTIAL VIRUS; SOURCE 3 ORGANISM_TAXID: 12814; SOURCE 4 EXPRESSION_SYSTEM: MAMMALIA; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 40674; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: RESPIRATORY SYNCYTIAL VIRUS; SOURCE 8 ORGANISM_TAXID: 12814; SOURCE 9 EXPRESSION_SYSTEM: MAMMALIA; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 40674 KEYWDS RSV, RSVF, PRE-FUSION, VIRUS EXPDTA X-RAY DIFFRACTION AUTHOR S.HAN,M.AMMIRATI REVDAT 3 25-OCT-23 7UJ3 1 REMARK REVDAT 2 10-MAY-23 7UJ3 1 JRNL REVDAT 1 19-APR-23 7UJ3 0 JRNL AUTH Y.CHE,A.V.GRIBENKO,X.SONG,L.D.HANDKE,K.S.EFFEREN,K.TOMPKINS, JRNL AUTH 2 S.KODALI,L.NUNEZ,A.K.PRASAD,L.M.PHELAN,M.AMMIRATI,X.YU, JRNL AUTH 3 J.A.LEES,W.CHEN,L.MARTINEZ,V.ROOPCHAND,S.HAN,X.QIU, JRNL AUTH 4 J.P.DEVINCENZO,K.U.JANSEN,P.R.DORMITZER,K.A.SWANSON JRNL TITL RATIONAL DESIGN OF A HIGHLY IMMUNOGENIC PREFUSION-STABILIZED JRNL TITL 2 F GLYCOPROTEIN ANTIGEN FOR A RESPIRATORY SYNCYTIAL VIRUS JRNL TITL 3 VACCINE. JRNL REF SCI TRANSL MED V. 15 E6422 2023 JRNL REFN ESSN 1946-6242 JRNL PMID 37023209 JRNL DOI 10.1126/SCITRANSLMED.ADE6422 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.6 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 11113 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 558 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.83 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2576 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2607 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2447 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE : 0.2922 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.01 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 129 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3392 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.512 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.513 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.721 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.640 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3474 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4714 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1221 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 88 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 484 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3474 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 490 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3979 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.12 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.10 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 22.84 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 175.5720 162.6440 176.8380 REMARK 3 T TENSOR REMARK 3 T11: 0.3080 T22: -0.2151 REMARK 3 T33: -0.0471 T12: -0.1548 REMARK 3 T13: -0.1603 T23: -0.1495 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.4353 REMARK 3 L33: 0.9649 L12: -0.2037 REMARK 3 L13: 0.2763 L23: 1.1249 REMARK 3 S TENSOR REMARK 3 S11: -0.0066 S12: -0.3029 S13: -0.2063 REMARK 3 S21: 0.1681 S22: 0.3357 S23: 0.4481 REMARK 3 S31: 0.2665 S32: -0.0566 S33: -0.3291 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 176.6480 172.9160 190.4180 REMARK 3 T TENSOR REMARK 3 T11: 0.0262 T22: -0.0832 REMARK 3 T33: 0.1212 T12: -0.1021 REMARK 3 T13: -0.1177 T23: -0.0205 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.3063 REMARK 3 L33: 1.6195 L12: -0.0551 REMARK 3 L13: 0.2100 L23: 0.3809 REMARK 3 S TENSOR REMARK 3 S11: -0.0956 S12: -0.2150 S13: 0.0072 REMARK 3 S21: 0.2738 S22: 0.2720 S23: 0.1652 REMARK 3 S31: 0.2613 S32: -0.1492 S33: -0.1763 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7UJ3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAR-22. REMARK 100 THE DEPOSITION ID IS D_1000263993. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11179 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 49.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 38.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.71 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BUSTER REMARK 200 STARTING MODEL: 4MMU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NA ACETATE, PH 4.6, 0.2 M REMARK 280 AMMONIUM SULFATE, AND 30% POLY(ETHYLENE) GLYCOL MONOMETHYL ETHER REMARK 280 2000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 85.01000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.01000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 85.01000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.01000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 85.01000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 85.01000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 85.01000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 85.01000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 85.01000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 85.01000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 85.01000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 85.01000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 85.01000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 85.01000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 85.01000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 85.01000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 85.01000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 85.01000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 127.51500 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 42.50500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 42.50500 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 127.51500 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 127.51500 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 127.51500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 42.50500 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 42.50500 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 127.51500 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 42.50500 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 127.51500 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 42.50500 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 127.51500 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 42.50500 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 42.50500 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 42.50500 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 127.51500 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 42.50500 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 127.51500 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 127.51500 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 127.51500 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 42.50500 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 42.50500 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 127.51500 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 127.51500 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 42.50500 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 42.50500 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 42.50500 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 42.50500 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 127.51500 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 42.50500 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 127.51500 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 42.50500 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 127.51500 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 127.51500 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 127.51500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 LEU A 3 REMARK 465 PRO A 4 REMARK 465 ILE A 5 REMARK 465 LEU A 6 REMARK 465 LYS A 7 REMARK 465 THR A 8 REMARK 465 ASN A 9 REMARK 465 ALA A 10 REMARK 465 ILE A 11 REMARK 465 THR A 12 REMARK 465 THR A 13 REMARK 465 ILE A 14 REMARK 465 LEU A 15 REMARK 465 ALA A 16 REMARK 465 ALA A 17 REMARK 465 VAL A 18 REMARK 465 THR A 19 REMARK 465 LEU A 20 REMARK 465 CYS A 21 REMARK 465 PHE A 22 REMARK 465 ALA A 23 REMARK 465 SER A 24 REMARK 465 SER A 25 REMARK 465 LYS A 65 REMARK 465 GLU A 66 REMARK 465 ASN A 67 REMARK 465 LYS A 68 REMARK 465 CYS A 69 REMARK 465 ASN A 70 REMARK 465 GLY A 71 REMARK 465 ARG A 108 REMARK 465 ARG A 109 REMARK 465 ASN B 208 REMARK 465 LYS B 209 REMARK 465 GLN B 210 REMARK 465 SER B 211 REMARK 465 CYS B 212 REMARK 465 SER B 213 REMARK 465 ILE B 214 REMARK 465 SER B 215 REMARK 465 ASN B 216 REMARK 465 ASP B 510 REMARK 465 GLU B 511 REMARK 465 LEU B 512 REMARK 465 LEU B 513 REMARK 465 SER B 514 REMARK 465 ALA B 515 REMARK 465 ILE B 516 REMARK 465 GLY B 517 REMARK 465 GLY B 518 REMARK 465 TYR B 519 REMARK 465 ILE B 520 REMARK 465 PRO B 521 REMARK 465 GLU B 522 REMARK 465 ALA B 523 REMARK 465 PRO B 524 REMARK 465 ARG B 525 REMARK 465 ASP B 526 REMARK 465 GLY B 527 REMARK 465 GLN B 528 REMARK 465 ALA B 529 REMARK 465 TYR B 530 REMARK 465 VAL B 531 REMARK 465 ARG B 532 REMARK 465 LYS B 533 REMARK 465 ASP B 534 REMARK 465 GLY B 535 REMARK 465 GLU B 536 REMARK 465 TRP B 537 REMARK 465 VAL B 538 REMARK 465 LEU B 539 REMARK 465 LEU B 540 REMARK 465 SER B 541 REMARK 465 THR B 542 REMARK 465 PHE B 543 REMARK 465 LEU B 544 REMARK 465 GLY B 545 REMARK 465 GLY B 546 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 103 SG CYS B 148 1.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 106 NE ARG B 339 5555 1.16 REMARK 500 NH2 ARG A 106 CD ARG B 339 5555 1.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS B 159 CB - CA - C ANGL. DEV. = -12.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 47 56.64 -163.57 REMARK 500 ASN A 104 -175.34 154.65 REMARK 500 ARG A 106 53.96 88.50 REMARK 500 LEU B 138 27.37 -74.14 REMARK 500 HIS B 159 31.59 -94.10 REMARK 500 GLU B 161 -124.09 55.12 REMARK 500 GLU B 163 -59.04 -26.91 REMARK 500 LEU B 193 104.40 63.54 REMARK 500 GLN B 202 -8.23 -149.18 REMARK 500 LEU B 252 117.68 -160.28 REMARK 500 SER B 290 -71.20 -122.15 REMARK 500 LYS B 293 -86.82 12.94 REMARK 500 GLU B 295 29.44 34.82 REMARK 500 THR B 324 66.66 -116.44 REMARK 500 SER B 330 12.82 50.63 REMARK 500 ALA B 346 67.79 37.13 REMARK 500 GLN B 354 76.05 -101.18 REMARK 500 ALA B 355 -9.47 -50.87 REMARK 500 SER B 362 -130.95 57.34 REMARK 500 THR B 400 73.67 -67.30 REMARK 500 ASP B 401 78.65 -69.14 REMARK 500 ASN B 428 -63.09 -95.37 REMARK 500 LYS B 461 34.26 -93.70 REMARK 500 ILE B 474 -39.49 -36.11 REMARK 500 VAL B 482 -10.48 87.62 REMARK 500 SER B 485 21.27 -77.72 REMARK 500 GLU B 487 92.25 -49.45 REMARK 500 REMARK 500 REMARK: NULL DBREF1 7UJ3 A 4 109 UNP A0A7D5GVC1_9MONO DBREF2 7UJ3 A A0A7D5GVC1 1 106 DBREF1 7UJ3 B 137 513 UNP A0A7D5GVC1_9MONO DBREF2 7UJ3 B A0A7D5GVC1 134 510 SEQADV 7UJ3 MET A 1 UNP A0A7D5GVC INITIATING METHIONINE SEQADV 7UJ3 GLU A 2 UNP A0A7D5GVC EXPRESSION TAG SEQADV 7UJ3 LEU A 3 UNP A0A7D5GVC EXPRESSION TAG SEQADV 7UJ3 CYS A 103 UNP A0A7D5GVC ALA 100 VARIANT SEQADV 7UJ3 CYS B 148 UNP A0A7D5GVC ILE 145 VARIANT SEQADV 7UJ3 ILE B 190 UNP A0A7D5GVC SER 187 VARIANT SEQADV 7UJ3 SER B 486 UNP A0A7D5GVC ASP 483 VARIANT SEQADV 7UJ3 SER B 514 UNP A0A7D5GVC EXPRESSION TAG SEQADV 7UJ3 ALA B 515 UNP A0A7D5GVC EXPRESSION TAG SEQADV 7UJ3 ILE B 516 UNP A0A7D5GVC EXPRESSION TAG SEQADV 7UJ3 GLY B 517 UNP A0A7D5GVC EXPRESSION TAG SEQADV 7UJ3 GLY B 518 UNP A0A7D5GVC EXPRESSION TAG SEQADV 7UJ3 TYR B 519 UNP A0A7D5GVC EXPRESSION TAG SEQADV 7UJ3 ILE B 520 UNP A0A7D5GVC EXPRESSION TAG SEQADV 7UJ3 PRO B 521 UNP A0A7D5GVC EXPRESSION TAG SEQADV 7UJ3 GLU B 522 UNP A0A7D5GVC EXPRESSION TAG SEQADV 7UJ3 ALA B 523 UNP A0A7D5GVC EXPRESSION TAG SEQADV 7UJ3 PRO B 524 UNP A0A7D5GVC EXPRESSION TAG SEQADV 7UJ3 ARG B 525 UNP A0A7D5GVC EXPRESSION TAG SEQADV 7UJ3 ASP B 526 UNP A0A7D5GVC EXPRESSION TAG SEQADV 7UJ3 GLY B 527 UNP A0A7D5GVC EXPRESSION TAG SEQADV 7UJ3 GLN B 528 UNP A0A7D5GVC EXPRESSION TAG SEQADV 7UJ3 ALA B 529 UNP A0A7D5GVC EXPRESSION TAG SEQADV 7UJ3 TYR B 530 UNP A0A7D5GVC EXPRESSION TAG SEQADV 7UJ3 VAL B 531 UNP A0A7D5GVC EXPRESSION TAG SEQADV 7UJ3 ARG B 532 UNP A0A7D5GVC EXPRESSION TAG SEQADV 7UJ3 LYS B 533 UNP A0A7D5GVC EXPRESSION TAG SEQADV 7UJ3 ASP B 534 UNP A0A7D5GVC EXPRESSION TAG SEQADV 7UJ3 GLY B 535 UNP A0A7D5GVC EXPRESSION TAG SEQADV 7UJ3 GLU B 536 UNP A0A7D5GVC EXPRESSION TAG SEQADV 7UJ3 TRP B 537 UNP A0A7D5GVC EXPRESSION TAG SEQADV 7UJ3 VAL B 538 UNP A0A7D5GVC EXPRESSION TAG SEQADV 7UJ3 LEU B 539 UNP A0A7D5GVC EXPRESSION TAG SEQADV 7UJ3 LEU B 540 UNP A0A7D5GVC EXPRESSION TAG SEQADV 7UJ3 SER B 541 UNP A0A7D5GVC EXPRESSION TAG SEQADV 7UJ3 THR B 542 UNP A0A7D5GVC EXPRESSION TAG SEQADV 7UJ3 PHE B 543 UNP A0A7D5GVC EXPRESSION TAG SEQADV 7UJ3 LEU B 544 UNP A0A7D5GVC EXPRESSION TAG SEQADV 7UJ3 GLY B 545 UNP A0A7D5GVC EXPRESSION TAG SEQADV 7UJ3 GLY B 546 UNP A0A7D5GVC EXPRESSION TAG SEQRES 1 A 109 MET GLU LEU PRO ILE LEU LYS THR ASN ALA ILE THR THR SEQRES 2 A 109 ILE LEU ALA ALA VAL THR LEU CYS PHE ALA SER SER GLN SEQRES 3 A 109 ASN ILE THR GLU GLU PHE TYR GLN SER THR CYS SER ALA SEQRES 4 A 109 VAL SER LYS GLY TYR LEU SER ALA LEU ARG THR GLY TRP SEQRES 5 A 109 TYR THR SER VAL ILE THR ILE GLU LEU SER ASN ILE LYS SEQRES 6 A 109 GLU ASN LYS CYS ASN GLY THR ASP ALA LYS VAL LYS LEU SEQRES 7 A 109 ILE LYS GLN GLU LEU ASP LYS TYR LYS ASN ALA VAL THR SEQRES 8 A 109 GLU LEU GLN LEU LEU MET GLN SER THR PRO ALA CYS ASN SEQRES 9 A 109 SER ARG ALA ARG ARG SEQRES 1 B 410 PHE LEU GLY PHE LEU LEU GLY VAL GLY SER ALA CYS ALA SEQRES 2 B 410 SER GLY ILE ALA VAL SER LYS VAL LEU HIS LEU GLU GLY SEQRES 3 B 410 GLU VAL ASN LYS ILE LYS SER ALA LEU LEU SER THR ASN SEQRES 4 B 410 LYS ALA VAL VAL SER LEU SER ASN GLY VAL SER VAL LEU SEQRES 5 B 410 THR ILE LYS VAL LEU ASP LEU LYS ASN TYR ILE ASP LYS SEQRES 6 B 410 GLN LEU LEU PRO ILE VAL ASN LYS GLN SER CYS SER ILE SEQRES 7 B 410 SER ASN ILE GLU THR VAL ILE GLU PHE GLN GLN LYS ASN SEQRES 8 B 410 ASN ARG LEU LEU GLU ILE THR ARG GLU PHE SER VAL ASN SEQRES 9 B 410 ALA GLY VAL THR THR PRO VAL SER THR TYR MET LEU THR SEQRES 10 B 410 ASN SER GLU LEU LEU SER LEU ILE ASN ASP MET PRO ILE SEQRES 11 B 410 THR ASN ASP GLN LYS LYS LEU MET SER SER ASN VAL GLN SEQRES 12 B 410 ILE VAL ARG GLN GLN SER TYR SER ILE MET SER ILE ILE SEQRES 13 B 410 LYS GLU GLU VAL LEU ALA TYR VAL VAL GLN LEU PRO LEU SEQRES 14 B 410 TYR GLY VAL ILE ASP THR PRO CYS TRP LYS LEU HIS THR SEQRES 15 B 410 SER PRO LEU CYS THR THR ASN THR LYS GLU GLY SER ASN SEQRES 16 B 410 ILE CYS LEU THR ARG THR ASP ARG GLY TRP TYR CYS ASP SEQRES 17 B 410 ASN ALA GLY SER VAL SER PHE PHE PRO GLN ALA GLU THR SEQRES 18 B 410 CYS LYS VAL GLN SER ASN ARG VAL PHE CYS ASP THR MET SEQRES 19 B 410 ASN SER LEU THR LEU PRO SER GLU VAL ASN LEU CYS ASN SEQRES 20 B 410 ILE ASP ILE PHE ASN PRO LYS TYR ASP CYS LYS ILE MET SEQRES 21 B 410 THR SER LYS THR ASP VAL SER SER SER VAL ILE THR SER SEQRES 22 B 410 LEU GLY ALA ILE VAL SER CYS TYR GLY LYS THR LYS CYS SEQRES 23 B 410 THR ALA SER ASN LYS ASN ARG GLY ILE ILE LYS THR PHE SEQRES 24 B 410 SER ASN GLY CYS ASP TYR VAL SER ASN LYS GLY VAL ASP SEQRES 25 B 410 THR VAL SER VAL GLY ASN THR LEU TYR TYR VAL ASN LYS SEQRES 26 B 410 GLN GLU GLY LYS SER LEU TYR VAL LYS GLY GLU PRO ILE SEQRES 27 B 410 ILE ASN PHE TYR ASP PRO LEU VAL PHE PRO SER SER GLU SEQRES 28 B 410 PHE ASP ALA SER ILE SER GLN VAL ASN GLU LYS ILE ASN SEQRES 29 B 410 GLN SER LEU ALA PHE ILE ARG LYS SER ASP GLU LEU LEU SEQRES 30 B 410 SER ALA ILE GLY GLY TYR ILE PRO GLU ALA PRO ARG ASP SEQRES 31 B 410 GLY GLN ALA TYR VAL ARG LYS ASP GLY GLU TRP VAL LEU SEQRES 32 B 410 LEU SER THR PHE LEU GLY GLY HET SO4 B 601 5 HET NAG B 602 14 HET SO4 B 603 5 HET SO4 B 604 5 HETNAM SO4 SULFATE ION HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 SO4 3(O4 S 2-) FORMUL 4 NAG C8 H15 N O6 HELIX 1 AA1 ASP A 73 MET A 97 1 25 HELIX 2 AA2 PHE B 137 LEU B 142 5 6 HELIX 3 AA3 CYS B 148 LEU B 158 1 11 HELIX 4 AA4 HIS B 159 GLU B 161 5 3 HELIX 5 AA5 GLY B 162 LEU B 171 1 10 HELIX 6 AA6 LEU B 195 LEU B 203 1 9 HELIX 7 AA7 THR B 219 ASN B 240 1 22 HELIX 8 AA8 THR B 253 ASP B 263 1 11 HELIX 9 AA9 THR B 267 ASN B 277 1 11 HELIX 10 AB1 ASN B 277 SER B 285 1 9 HELIX 11 AB2 GLN B 354 CYS B 358 5 5 HELIX 12 AB3 MET B 370 SER B 372 5 3 HELIX 13 AB4 ASN B 380 ASP B 385 1 6 HELIX 14 AB5 PRO B 473 PHE B 477 5 5 HELIX 15 AB6 ILE B 492 SER B 509 1 18 SHEET 1 AA1 7 LYS B 359 GLN B 361 0 SHEET 2 AA1 7 ARG B 364 ASP B 368 -1 O PHE B 366 N LYS B 359 SHEET 3 AA1 7 SER A 38 ARG A 49 1 N ARG A 49 O CYS B 367 SHEET 4 AA1 7 VAL B 308 THR B 318 -1 O HIS B 317 N ALA A 39 SHEET 5 AA1 7 GLY B 340 ASN B 345 -1 O ASP B 344 N PRO B 312 SHEET 6 AA1 7 SER B 348 PHE B 352 -1 O PHE B 352 N TRP B 341 SHEET 7 AA1 7 LEU B 373 PRO B 376 -1 O LEU B 373 N PHE B 351 SHEET 1 AA2 5 LYS B 359 GLN B 361 0 SHEET 2 AA2 5 ARG B 364 ASP B 368 -1 O PHE B 366 N LYS B 359 SHEET 3 AA2 5 SER A 38 ARG A 49 1 N ARG A 49 O CYS B 367 SHEET 4 AA2 5 THR A 29 TYR A 33 -1 N TYR A 33 O SER A 38 SHEET 5 AA2 5 LYS B 465 VAL B 469 1 O LEU B 467 N GLU A 30 SHEET 1 AA3 6 LYS B 176 SER B 180 0 SHEET 2 AA3 6 SER B 186 ASP B 194 -1 O VAL B 187 N VAL B 179 SHEET 3 AA3 6 GLY A 51 GLU A 60 1 N THR A 58 O VAL B 192 SHEET 4 AA3 6 VAL B 296 LEU B 305 -1 O VAL B 301 N SER A 55 SHEET 5 AA3 6 TYR B 286 ILE B 291 -1 N ILE B 288 O VAL B 300 SHEET 6 AA3 6 VAL B 243 THR B 244 -1 N THR B 244 O SER B 287 SHEET 1 AA4 4 LEU B 321 CYS B 322 0 SHEET 2 AA4 4 CYS B 333 ARG B 336 -1 O LEU B 334 N LEU B 321 SHEET 3 AA4 4 LYS B 394 SER B 398 -1 O SER B 398 N CYS B 333 SHEET 4 AA4 4 ALA B 490 SER B 491 -1 O ALA B 490 N ILE B 395 SHEET 1 AA5 3 SER B 404 VAL B 406 0 SHEET 2 AA5 3 GLY B 411 CYS B 416 -1 O ILE B 413 N VAL B 406 SHEET 3 AA5 3 GLY B 438 SER B 443 -1 O GLY B 438 N CYS B 416 SHEET 1 AA6 4 GLY B 430 THR B 434 0 SHEET 2 AA6 4 CYS B 422 ASN B 426 -1 N ALA B 424 O LYS B 433 SHEET 3 AA6 4 THR B 449 VAL B 452 -1 O THR B 449 N SER B 425 SHEET 4 AA6 4 THR B 455 TYR B 458 -1 O TYR B 457 N VAL B 450 SSBOND 1 CYS A 37 CYS B 439 1555 1555 2.03 SSBOND 2 CYS B 313 CYS B 343 1555 1555 2.04 SSBOND 3 CYS B 322 CYS B 333 1555 1555 2.03 SSBOND 4 CYS B 358 CYS B 367 1555 1555 2.04 SSBOND 5 CYS B 382 CYS B 393 1555 1555 2.04 SSBOND 6 CYS B 416 CYS B 422 1555 1555 2.05 LINK ND2 ASN B 500 C1 NAG B 602 1555 1555 1.44 CISPEP 1 THR B 245 PRO B 246 0 1.37 CRYST1 170.020 170.020 170.020 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005882 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005882 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005882 0.00000