HEADER OXIDOREDUCTASE 31-MAR-22 7UJV TITLE STRUCTURE OF PHD2 IN COMPLEX WITH HIF2A-CODD COMPND MOL_ID: 1; COMPND 2 MOLECULE: EGL NINE HOMOLOG 1; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: HYPOXIA-INDUCIBLE FACTOR PROLYL HYDROXYLASE 2,HIF-PH2,HIF- COMPND 5 PROLYL HYDROXYLASE 2,HPH-2,PROLYL HYDROXYLASE DOMAIN-CONTAINING COMPND 6 PROTEIN 2,PHD2,SM-20; COMPND 7 EC: 1.14.11.29; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: ENDOTHELIAL PAS DOMAIN-CONTAINING PROTEIN 1; COMPND 11 CHAIN: A; COMPND 12 FRAGMENT: CODD PEPTIDE; COMPND 13 SYNONYM: EPAS-1,BASIC-HELIX-LOOP-HELIX-PAS PROTEIN MOP2,CLASS E BASIC COMPND 14 HELIX-LOOP-HELIX PROTEIN 73,BHLHE73,HIF-1-ALPHA-LIKE FACTOR,HLF, COMPND 15 HYPOXIA-INDUCIBLE FACTOR 2-ALPHA,HIF-2-ALPHA,HIF2-ALPHA,MEMBER OF PAS COMPND 16 PROTEIN 2,PAS DOMAIN-CONTAINING PROTEIN 2; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EGLN1, C1ORF12, PNAS-118, PNAS-137; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS HIF-PROLYL-HYDROXYLASE, COMPLEX, OXYGEN-SENSING, PSUEDOHYPOXIC- KEYWDS 2 DISEASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR F.G.FERENS,D.TARADE,J.E.LEE,M.OHH REVDAT 3 13-MAR-24 7UJV 1 JRNL REVDAT 2 25-OCT-23 7UJV 1 REMARK REVDAT 1 05-APR-23 7UJV 0 JRNL AUTH F.G.FERENS,C.C.TABER,S.STUART,M.HUBERT,D.TARADE,J.E.LEE, JRNL AUTH 2 M.OHH JRNL TITL DEFICIENCY IN PHD2-MEDIATED HYDROXYLATION OF HIF2 ALPHA JRNL TITL 2 UNDERLIES PACAK-ZHUANG SYNDROME. JRNL REF COMMUN BIOL V. 7 240 2024 JRNL REFN ESSN 2399-3642 JRNL PMID 38418569 JRNL DOI 10.1038/S42003-024-05904-4 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 19760 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.787 REMARK 3 FREE R VALUE TEST SET COUNT : 946 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1362 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2970 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1889 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 108 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.58 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.71500 REMARK 3 B22 (A**2) : -0.48200 REMARK 3 B33 (A**2) : 1.19800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.137 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.128 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.115 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.058 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1944 ; 0.006 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1816 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2623 ; 1.368 ; 1.639 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4193 ; 0.461 ; 1.576 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 237 ; 7.198 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 107 ;33.087 ;22.056 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 332 ;15.240 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;14.350 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 243 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2201 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 445 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 401 ; 0.235 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 65 ; 0.223 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 957 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 114 ; 0.142 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.000 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 954 ; 2.037 ; 2.662 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 953 ; 2.037 ; 2.662 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1189 ; 3.078 ; 3.976 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1190 ; 3.076 ; 3.976 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 989 ; 3.023 ; 2.995 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 990 ; 3.022 ; 2.995 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1433 ; 4.837 ; 4.336 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1434 ; 4.835 ; 4.336 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT FILE REMARK 4 REMARK 4 7UJV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-APR-22. REMARK 100 THE DEPOSITION ID IS D_1000264192. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS 2.1 REMARK 200 DATA SCALING SOFTWARE : DIALS 2.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19834 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 129.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.79000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 5L9B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 27.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 32.5% (W/V) PEG 2000 MME, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 64.53900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 18.79850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 64.53900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 18.79850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 670 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 690 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 177 REMARK 465 SER B 178 REMARK 465 GLY B 179 REMARK 465 SER B 180 REMARK 465 PRO B 181 REMARK 465 ASN B 182 REMARK 465 GLY B 183 REMARK 465 GLN B 184 REMARK 465 THR B 185 REMARK 465 LYS B 186 REMARK 465 PRO B 187 REMARK 465 GLU B 407 REMARK 465 LYS B 408 REMARK 465 GLY B 409 REMARK 465 VAL B 410 REMARK 465 ARG B 411 REMARK 465 VAL B 412 REMARK 465 GLU B 413 REMARK 465 LEU B 414 REMARK 465 ASN B 415 REMARK 465 LYS B 416 REMARK 465 PRO B 417 REMARK 465 SER B 418 REMARK 465 ASP B 419 REMARK 465 SER B 420 REMARK 465 VAL B 421 REMARK 465 GLY B 422 REMARK 465 LYS B 423 REMARK 465 ASP B 424 REMARK 465 VAL B 425 REMARK 465 PHE B 426 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR B 197 -61.03 -129.86 REMARK 500 LYS B 244 -137.62 -117.30 REMARK 500 PRO B 304 48.67 -77.75 REMARK 500 LEU B 330 39.53 -142.17 REMARK 500 PHE B 346 76.69 -116.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 503 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 313 NE2 REMARK 620 2 ASP B 315 OD1 91.6 REMARK 620 3 HIS B 374 NE2 88.4 90.9 REMARK 620 4 OGA B 501 O2 94.6 97.5 171.0 REMARK 620 5 OGA B 501 O2' 94.8 173.1 92.0 79.3 REMARK 620 6 HOH B 608 O 178.5 89.4 90.5 86.4 84.3 REMARK 620 N 1 2 3 4 5 DBREF 7UJV B 181 426 UNP Q9GZT9 EGLN1_HUMAN 181 426 DBREF 7UJV A 523 542 UNP Q99814 EPAS1_HUMAN 523 542 SEQADV 7UJV GLY B 177 UNP Q9GZT9 EXPRESSION TAG SEQADV 7UJV SER B 178 UNP Q9GZT9 EXPRESSION TAG SEQADV 7UJV GLY B 179 UNP Q9GZT9 EXPRESSION TAG SEQADV 7UJV SER B 180 UNP Q9GZT9 EXPRESSION TAG SEQADV 7UJV NH2 A 543 UNP Q99814 AMIDATION SEQRES 1 B 250 GLY SER GLY SER PRO ASN GLY GLN THR LYS PRO LEU PRO SEQRES 2 B 250 ALA LEU LYS LEU ALA LEU GLU TYR ILE VAL PRO CYS MET SEQRES 3 B 250 ASN LYS HIS GLY ILE CYS VAL VAL ASP ASP PHE LEU GLY SEQRES 4 B 250 LYS GLU THR GLY GLN GLN ILE GLY ASP GLU VAL ARG ALA SEQRES 5 B 250 LEU HIS ASP THR GLY LYS PHE THR ASP GLY GLN LEU VAL SEQRES 6 B 250 SER GLN LYS SER ASP SER SER LYS ASP ILE ARG GLY ASP SEQRES 7 B 250 LYS ILE THR TRP ILE GLU GLY LYS GLU PRO GLY CYS GLU SEQRES 8 B 250 THR ILE GLY LEU LEU MET SER SER MET ASP ASP LEU ILE SEQRES 9 B 250 ARG HIS CYS ASN GLY LYS LEU GLY SER TYR LYS ILE ASN SEQRES 10 B 250 GLY ARG THR LYS ALA MET VAL ALA CYS TYR PRO GLY ASN SEQRES 11 B 250 GLY THR GLY TYR VAL ARG HIS VAL ASP ASN PRO ASN GLY SEQRES 12 B 250 ASP GLY ARG CYS VAL THR CYS ILE TYR TYR LEU ASN LYS SEQRES 13 B 250 ASP TRP ASP ALA LYS VAL SER GLY GLY ILE LEU ARG ILE SEQRES 14 B 250 PHE PRO GLU GLY LYS ALA GLN PHE ALA ASP ILE GLU PRO SEQRES 15 B 250 LYS PHE ASP ARG LEU LEU PHE PHE TRP SER ASP ARG ARG SEQRES 16 B 250 ASN PRO HIS GLU VAL GLN PRO ALA TYR ALA THR ARG TYR SEQRES 17 B 250 ALA ILE THR VAL TRP TYR PHE ASP ALA ASP GLU ARG ALA SEQRES 18 B 250 ARG ALA LYS VAL LYS TYR LEU THR GLY GLU LYS GLY VAL SEQRES 19 B 250 ARG VAL GLU LEU ASN LYS PRO SER ASP SER VAL GLY LYS SEQRES 20 B 250 ASP VAL PHE SEQRES 1 A 21 GLU LEU ASP LEU GLU THR LEU ALA PRO TYR ILE PRO MET SEQRES 2 A 21 ASP GLY GLU ASP PHE GLN LEU NH2 HET NH2 A 543 1 HET OGA B 501 13 HET GOL B 502 14 HET FE B 503 1 HETNAM NH2 AMINO GROUP HETNAM OGA N-OXALYLGLYCINE HETNAM GOL GLYCEROL HETNAM FE FE (III) ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NH2 H2 N FORMUL 3 OGA C4 H5 N O5 FORMUL 4 GOL C3 H8 O3 FORMUL 5 FE FE 3+ FORMUL 6 HOH *108(H2 O) HELIX 1 AA1 PRO B 189 TYR B 197 1 9 HELIX 2 AA2 TYR B 197 HIS B 205 1 9 HELIX 3 AA3 GLY B 215 THR B 232 1 18 HELIX 4 AA4 SER B 247 ILE B 251 5 5 HELIX 5 AA5 CYS B 266 CYS B 283 1 18 HELIX 6 AA6 ASP B 335 GLY B 340 1 6 HELIX 7 AA7 ALA B 393 THR B 405 1 13 HELIX 8 AA8 ASP A 525 LEU A 529 5 5 SHEET 1 AA1 7 ILE B 207 VAL B 210 0 SHEET 2 AA1 7 ARG B 362 TRP B 367 -1 O LEU B 363 N VAL B 210 SHEET 3 AA1 7 ARG B 322 TYR B 329 -1 N THR B 325 O PHE B 366 SHEET 4 AA1 7 THR B 382 ASP B 392 -1 O TYR B 390 N CYS B 323 SHEET 5 AA1 7 ALA B 298 PRO B 304 -1 N MET B 299 O THR B 387 SHEET 6 AA1 7 LYS B 255 ILE B 259 -1 N THR B 257 O VAL B 300 SHEET 7 AA1 7 THR B 236 ASP B 237 -1 N THR B 236 O ILE B 256 SHEET 1 AA2 6 ILE B 207 VAL B 210 0 SHEET 2 AA2 6 ARG B 362 TRP B 367 -1 O LEU B 363 N VAL B 210 SHEET 3 AA2 6 ARG B 322 TYR B 329 -1 N THR B 325 O PHE B 366 SHEET 4 AA2 6 THR B 382 ASP B 392 -1 O TYR B 390 N CYS B 323 SHEET 5 AA2 6 ILE B 292 ARG B 295 -1 N GLY B 294 O PHE B 391 SHEET 6 AA2 6 PHE A 540 GLN A 541 -1 O PHE A 540 N ARG B 295 SHEET 1 AA3 4 THR B 308 HIS B 313 0 SHEET 2 AA3 4 HIS B 374 ALA B 379 -1 O HIS B 374 N HIS B 313 SHEET 3 AA3 4 LEU B 343 ILE B 345 -1 N ARG B 344 O GLU B 375 SHEET 4 AA3 4 ALA B 354 ILE B 356 -1 O ILE B 356 N LEU B 343 LINK C LEU A 542 N NH2 A 543 1555 1555 1.41 LINK NE2 HIS B 313 FE FE B 503 1555 1555 2.08 LINK OD1 ASP B 315 FE FE B 503 1555 1555 2.14 LINK NE2 HIS B 374 FE FE B 503 1555 1555 2.00 LINK O2 OGA B 501 FE FE B 503 1555 1555 2.06 LINK O2' OGA B 501 FE FE B 503 1555 1555 2.02 LINK FE FE B 503 O HOH B 608 1555 1555 2.14 CRYST1 129.078 37.597 42.148 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007747 0.000000 0.000000 0.00000 SCALE2 0.000000 0.026598 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023726 0.00000