HEADER METAL BINDING PROTEIN/INHIBITOR 31-MAR-22 7UK2 TITLE CRYSTAL STRUCTURE OF DANIO RERIO HISTONE DEACETYLASE 6 CATALYTIC TITLE 2 DOMAIN 2 COMPLEXED WITH NN-390 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HDAC6 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN 2 (UNP RESIDUES 290-646); COMPND 5 SYNONYM: HISTONE DEACETYLASE 6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: HDAC6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS POTASSIUM ION BINDING, ALKALI METAL ION BINDING, ION BINDING, CATION KEYWDS 2 BINDING, METAL ION BINDING, CATALYTIC ACTIVITY, HYDROLASE ACTIVITY, KEYWDS 3 DEACETYLASE ACTIVITY, PROTEIN DEACETYLASE ACTIVITY, ACTING ON A KEYWDS 4 PROTEIN, ACTING ON CARBON-NITROGEN (BUT NOT PEPTIDE) BONDS, IN KEYWDS 5 LINEAR AMIDES, TUBULIN DEACETYLASE ACTIVITY, ZINC ION BINDING, KEYWDS 6 TRANSITION METAL ION BINDING, METAL BINDING PROTEIN, METAL BINDING KEYWDS 7 PROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR F.ERDOGAN,H.-S.SEO,S.DHE-PAGANON REVDAT 3 25-OCT-23 7UK2 1 REMARK REVDAT 2 30-NOV-22 7UK2 1 JRNL REVDAT 1 02-NOV-22 7UK2 0 JRNL AUTH H.K.GARCHA,N.NAWAR,H.SORGER,F.ERDOGAN,M.M.K.AUNG,A.SEDIGHI, JRNL AUTH 2 P.MANASWIYOUNGKUL,H.S.SEO,S.SCHONEFELDT,D.POLOSKE, JRNL AUTH 3 S.DHE-PAGANON,H.A.NEUBAUER,S.M.MUSTJOKI,M.HERLING, JRNL AUTH 4 E.D.DE ARAUJO,R.MORIGGL,P.T.GUNNING JRNL TITL HIGH EFFICACY AND DRUG SYNERGY OF HDAC6-SELECTIVE INHIBITOR JRNL TITL 2 NN-429 IN NATURAL KILLER (NK)/T-CELL LYMPHOMA. JRNL REF PHARMACEUTICALS V. 15 2022 JRNL REFN ESSN 1424-8247 JRNL PMID 36355493 JRNL DOI 10.3390/PH15111321 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.V.AFONINE,R.W.GROSSE-KUNSTLEVE,N.ECHOLS,J.J.HEADD, REMARK 1 AUTH 2 N.W.MORIARTY,M.MUSTYAKIMOV,T.C.TERWILLIGER,A.URZHUMTSEV, REMARK 1 AUTH 3 P.H.ZWART,P.D.ADAMS REMARK 1 TITL TOWARDS AUTOMATED CRYSTALLOGRAPHIC STRUCTURE REFINEMENT WITH REMARK 1 TITL 2 PHENIX.REFINE. REMARK 1 REF ACTA CRYSTALLOGR D BIOL V. 68 352 2012 REMARK 1 REF 2 CRYSTALLOGR REMARK 1 REFN ESSN 1399-0047 REMARK 1 DOI 10.1107/S0907444912001308 REMARK 1 REFERENCE 2 REMARK 1 AUTH O.O.OLAOYE,P.R.WATSON,N.NAWAR,M.GELETU,A.SEDIGHI,S.BUKHARI, REMARK 1 AUTH 2 Y.S.RAOUF,P.MANASWIYOUNGKUL,F.ERDOGAN,A.ABDELDAYEM, REMARK 1 AUTH 3 A.D.CABRAL,M.M.HASSAN,K.TOUTAH,A.E.SHOUKSMITH,J.M.GAWEL, REMARK 1 AUTH 4 J.ISRAELIAN,T.B.RADU,N.KACHHIYAPATEL,E.D.DE ARAUJO, REMARK 1 AUTH 5 D.W.CHRISTIANSON,P.T.GUNNING REMARK 1 TITL UNIQUE MOLECULAR INTERACTION WITH THE HISTONE DEACETYLASE 6 REMARK 1 TITL 2 CATALYTIC TUNNEL: CRYSTALLOGRAPHIC AND BIOLOGICAL REMARK 1 TITL 3 CHARACTERIZATION OF A MODEL CHEMOTYPE. REMARK 1 REF J MED CHEM V. 64 2691 2021 REMARK 1 REFN ISSN 1520-4804 REMARK 1 PMID 33576627 REMARK 1 DOI 10.1021/ACS.JMEDCHEM.0C01922 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20_4459 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 53385 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 2637 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 62.0600 - 4.2600 1.00 2881 149 0.1686 0.1681 REMARK 3 2 4.2600 - 3.3800 0.99 2762 138 0.1617 0.1772 REMARK 3 3 3.3800 - 2.9500 1.00 2734 126 0.1867 0.2021 REMARK 3 4 2.9500 - 2.6800 1.00 2713 136 0.1928 0.2208 REMARK 3 5 2.6800 - 2.4900 1.00 2678 166 0.1915 0.2163 REMARK 3 6 2.4900 - 2.3400 1.00 2680 139 0.1975 0.2231 REMARK 3 7 2.3400 - 2.2300 1.00 2683 108 0.1887 0.2240 REMARK 3 8 2.2300 - 2.1300 1.00 2668 129 0.1928 0.2061 REMARK 3 9 2.1300 - 2.0500 1.00 2672 138 0.1953 0.2447 REMARK 3 10 2.0500 - 1.9800 1.00 2668 152 0.2255 0.2248 REMARK 3 11 1.9800 - 1.9200 0.99 2652 133 0.2222 0.2565 REMARK 3 12 1.9200 - 1.8600 1.00 2664 131 0.2120 0.2528 REMARK 3 13 1.8600 - 1.8100 1.00 2658 127 0.2205 0.2448 REMARK 3 14 1.8100 - 1.7700 1.00 2656 138 0.2325 0.2592 REMARK 3 15 1.7700 - 1.7300 1.00 2621 167 0.2470 0.3146 REMARK 3 16 1.7300 - 1.6900 1.00 2635 137 0.2586 0.3042 REMARK 3 17 1.6900 - 1.6600 1.00 2652 129 0.2791 0.3233 REMARK 3 18 1.6600 - 1.6300 1.00 2659 153 0.3064 0.3474 REMARK 3 19 1.6300 - 1.6000 0.92 2412 141 0.3486 0.4142 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.67 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7UK2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-APR-22. REMARK 100 THE DEPOSITION ID IS D_1000262298. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53466 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 93.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.26800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 1.12500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6CSR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG3350, 0.2M POTASSIUM REMARK 280 THIOCYANATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.56750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.63800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.56750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.63800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1193 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 769 REMARK 465 ASP A 770 REMARK 465 HIS A 771 REMARK 465 LEU A 772 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1148 O HOH A 1174 1.79 REMARK 500 O HOH A 1040 O HOH A 1160 1.81 REMARK 500 O THR A 773 O HOH A 901 1.92 REMARK 500 O HOH A 1175 O HOH A 1231 1.99 REMARK 500 OD2 ASP A 639 O HOH A 902 2.01 REMARK 500 OE2 GLU A 624 O HOH A 903 2.02 REMARK 500 O HOH A 1113 O HOH A 1206 2.05 REMARK 500 O HOH A 1049 O HOH A 1176 2.07 REMARK 500 O HOH A 1143 O HOH A 1162 2.08 REMARK 500 O HOH A 1014 O HOH A 1186 2.11 REMARK 500 O HOH A 903 O HOH A 974 2.12 REMARK 500 NH2 ARG A 708 O HOH A 904 2.17 REMARK 500 NH2 ARG A 601 OE2 GLU A 696 2.17 REMARK 500 OG1 THR A 773 O HOH A 905 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 496 NE2 HIS A 683 4654 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 583 -0.36 72.99 REMARK 500 THR A 600 -99.73 -127.25 REMARK 500 TYR A 637 -51.37 -128.11 REMARK 500 LEU A 685 -61.85 -127.91 REMARK 500 ALA A 702 72.22 -101.33 REMARK 500 GLU A 742 -112.16 -116.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1277 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A1278 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A1279 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH A1280 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH A1281 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH A1282 DISTANCE = 6.80 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 803 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 610 O REMARK 620 2 ASP A 610 OD1 73.0 REMARK 620 3 ASP A 612 O 98.0 96.3 REMARK 620 4 HIS A 614 O 167.2 97.2 74.6 REMARK 620 5 SER A 633 OG 89.1 118.4 145.1 103.0 REMARK 620 6 LEU A 634 O 79.2 143.1 63.8 105.9 84.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 612 OD1 REMARK 620 2 ASP A 612 OD2 53.7 REMARK 620 3 HIS A 614 ND1 96.9 150.3 REMARK 620 4 ASP A 705 OD2 103.9 86.6 98.8 REMARK 620 5 O2L A 801 N19 116.6 116.3 77.9 139.4 REMARK 620 6 O2L A 801 O20 89.0 87.4 96.7 158.4 32.0 REMARK 620 7 O2L A 801 O21 166.8 119.0 90.6 85.6 54.3 79.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 804 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 623 O REMARK 620 2 ASP A 626 O 77.3 REMARK 620 3 VAL A 629 O 118.0 77.0 REMARK 620 4 TYR A 662 O 155.6 117.3 85.4 REMARK 620 5 HOH A 982 O 68.8 145.3 125.4 92.7 REMARK 620 6 HOH A1028 O 81.3 88.8 151.8 79.6 79.4 REMARK 620 N 1 2 3 4 5 DBREF 7UK2 A 442 798 UNP A7YT55 A7YT55_DANRE 290 646 SEQRES 1 A 357 PRO ILE THR GLY LEU VAL TYR ASP GLN ARG MET MET LEU SEQRES 2 A 357 HIS HIS ASN MET TRP ASP SER HIS HIS PRO GLU LEU PRO SEQRES 3 A 357 GLN ARG ILE SER ARG ILE PHE SER ARG HIS GLU GLU LEU SEQRES 4 A 357 ARG LEU LEU SER ARG CYS HIS ARG ILE PRO ALA ARG LEU SEQRES 5 A 357 ALA THR GLU GLU GLU LEU ALA LEU CYS HIS SER SER LYS SEQRES 6 A 357 HIS ILE SER ILE ILE LYS SER SER GLU HIS MET LYS PRO SEQRES 7 A 357 ARG ASP LEU ASN ARG LEU GLY ASP GLU TYR ASN SER ILE SEQRES 8 A 357 PHE ILE SER ASN GLU SER TYR THR CYS ALA LEU LEU ALA SEQRES 9 A 357 ALA GLY SER CYS PHE ASN SER ALA GLN ALA ILE LEU THR SEQRES 10 A 357 GLY GLN VAL ARG ASN ALA VAL ALA ILE VAL ARG PRO PRO SEQRES 11 A 357 GLY HIS HIS ALA GLU LYS ASP THR ALA CYS GLY PHE CYS SEQRES 12 A 357 PHE PHE ASN THR ALA ALA LEU THR ALA ARG TYR ALA GLN SEQRES 13 A 357 SER ILE THR ARG GLU SER LEU ARG VAL LEU ILE VAL ASP SEQRES 14 A 357 TRP ASP VAL HIS HIS GLY ASN GLY THR GLN HIS ILE PHE SEQRES 15 A 357 GLU GLU ASP ASP SER VAL LEU TYR ILE SER LEU HIS ARG SEQRES 16 A 357 TYR GLU ASP GLY ALA PHE PHE PRO ASN SER GLU ASP ALA SEQRES 17 A 357 ASN TYR ASP LYS VAL GLY LEU GLY LYS GLY ARG GLY TYR SEQRES 18 A 357 ASN VAL ASN ILE PRO TRP ASN GLY GLY LYS MET GLY ASP SEQRES 19 A 357 PRO GLU TYR MET ALA ALA PHE HIS HIS LEU VAL MET PRO SEQRES 20 A 357 ILE ALA ARG GLU PHE ALA PRO GLU LEU VAL LEU VAL SER SEQRES 21 A 357 ALA GLY PHE ASP ALA ALA ARG GLY ASP PRO LEU GLY GLY SEQRES 22 A 357 PHE GLN VAL THR PRO GLU GLY TYR ALA HIS LEU THR HIS SEQRES 23 A 357 GLN LEU MET SER LEU ALA ALA GLY ARG VAL LEU ILE ILE SEQRES 24 A 357 LEU GLU GLY GLY TYR ASN LEU THR SER ILE SER GLU SER SEQRES 25 A 357 MET SER MET CYS THR SER MET LEU LEU GLY ASP SER PRO SEQRES 26 A 357 PRO SER LEU ASP HIS LEU THR PRO LEU LYS THR SER ALA SEQRES 27 A 357 THR VAL SER ILE ASN ASN VAL LEU ARG ALA HIS ALA PRO SEQRES 28 A 357 PHE TRP SER SER LEU ARG HET O2L A 801 28 HET ZN A 802 1 HET K A 803 1 HET K A 804 1 HETNAM O2L N-HYDROXY-4-{[(PROPAN-2-YL)(2,3,4,5-TETRAFLUOROBENZENE- HETNAM 2 O2L 1-SULFONYL)AMINO]METHYL}BENZAMIDE HETNAM ZN ZINC ION HETNAM K POTASSIUM ION FORMUL 2 O2L C17 H16 F4 N2 O4 S FORMUL 3 ZN ZN 2+ FORMUL 4 K 2(K 1+) FORMUL 6 HOH *382(H2 O) HELIX 1 AA1 GLN A 450 LEU A 454 5 5 HELIX 2 AA2 PRO A 467 LEU A 480 1 14 HELIX 3 AA3 LEU A 482 CYS A 486 5 5 HELIX 4 AA4 THR A 495 ALA A 500 1 6 HELIX 5 AA5 SER A 504 SER A 514 1 11 HELIX 6 AA6 GLU A 515 MET A 517 5 3 HELIX 7 AA7 LYS A 518 GLU A 528 1 11 HELIX 8 AA8 GLU A 537 THR A 558 1 22 HELIX 9 AA9 ASN A 587 THR A 600 1 14 HELIX 10 AB1 GLY A 616 PHE A 623 1 8 HELIX 11 AB2 GLU A 638 ALA A 641 5 4 HELIX 12 AB3 SER A 646 ASN A 650 5 5 HELIX 13 AB4 LEU A 656 ARG A 660 5 5 HELIX 14 AB5 GLY A 674 LEU A 685 1 12 HELIX 15 AB6 LEU A 685 ALA A 694 1 10 HELIX 16 AB7 THR A 718 MET A 730 1 13 HELIX 17 AB8 SER A 731 GLY A 735 5 5 HELIX 18 AB9 ASN A 746 LEU A 762 1 17 HELIX 19 AC1 LYS A 776 ALA A 791 1 16 HELIX 20 AC2 TRP A 794 ARG A 798 5 5 SHEET 1 AA1 8 HIS A 487 ARG A 488 0 SHEET 2 AA1 8 THR A 444 TYR A 448 1 N THR A 444 O HIS A 487 SHEET 3 AA1 8 ASN A 563 ILE A 567 1 O ASN A 563 N GLY A 445 SHEET 4 AA1 8 VAL A 737 LEU A 741 1 O ILE A 739 N ALA A 566 SHEET 5 AA1 8 LEU A 697 ALA A 702 1 N VAL A 700 O ILE A 740 SHEET 6 AA1 8 VAL A 606 ASP A 610 1 N LEU A 607 O LEU A 699 SHEET 7 AA1 8 VAL A 629 ARG A 636 1 O ILE A 632 N ASP A 610 SHEET 8 AA1 8 ASN A 663 TRP A 668 1 O VAL A 664 N TYR A 631 LINK O ASP A 610 K K A 803 1555 1555 2.65 LINK OD1 ASP A 610 K K A 803 1555 1555 2.53 LINK OD1 ASP A 612 ZN ZN A 802 1555 1555 2.12 LINK OD2 ASP A 612 ZN ZN A 802 1555 1555 2.60 LINK O ASP A 612 K K A 803 1555 1555 2.74 LINK ND1 HIS A 614 ZN ZN A 802 1555 1555 2.18 LINK O HIS A 614 K K A 803 1555 1555 2.69 LINK O PHE A 623 K K A 804 1555 1555 2.68 LINK O ASP A 626 K K A 804 1555 1555 2.91 LINK O VAL A 629 K K A 804 1555 1555 2.65 LINK OG SER A 633 K K A 803 1555 1555 2.54 LINK O LEU A 634 K K A 803 1555 1555 2.70 LINK O TYR A 662 K K A 804 1555 1555 2.84 LINK OD2 ASP A 705 ZN ZN A 802 1555 1555 2.10 LINK N19 O2L A 801 ZN ZN A 802 1555 1555 2.67 LINK O20 O2L A 801 ZN ZN A 802 1555 1555 2.16 LINK O21 O2L A 801 ZN ZN A 802 1555 1555 2.36 LINK K K A 804 O HOH A 982 1555 1555 3.03 LINK K K A 804 O HOH A1028 1555 1555 2.63 CISPEP 1 ARG A 569 PRO A 570 0 -3.37 CISPEP 2 PHE A 643 PRO A 644 0 11.18 CRYST1 51.263 83.135 93.276 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019507 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012029 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010721 0.00000