HEADER REPLICATION 12-APR-22 7UO4 TITLE SARS-COV-2 REPLICATION-TRANSCRIPTION COMPLEX BOUND TO REMDESIVIR TITLE 2 TRIPHOSPHATE, IN A PRE-CATALYTIC STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-DIRECTED RNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 4393-5324; COMPND 5 SYNONYM: POL, RDRP, NON-STRUCTURAL PROTEIN 12, NSP12; COMPND 6 EC: 2.7.7.48; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: NON-STRUCTURAL PROTEIN 8; COMPND 10 CHAIN: B, D; COMPND 11 SYNONYM: NSP8; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: NON-STRUCTURAL PROTEIN 7; COMPND 15 CHAIN: C; COMPND 16 SYNONYM: NSP7; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 4; COMPND 19 MOLECULE: PRODUCT RNA (35-MER); COMPND 20 CHAIN: P; COMPND 21 ENGINEERED: YES; COMPND 22 MOL_ID: 5; COMPND 23 MOLECULE: TEMPLATE RNA (55-MER); COMPND 24 CHAIN: T; COMPND 25 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_TAXID: 2697049; SOURCE 5 GENE: REP, 1A-1B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 11 2; SOURCE 12 ORGANISM_TAXID: 2697049; SOURCE 13 GENE: REP, 1A-1B; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 19 2; SOURCE 20 ORGANISM_TAXID: 2697049; SOURCE 21 GENE: REP, 1A-1B; SOURCE 22 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 23 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 24 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 25 MOL_ID: 4; SOURCE 26 SYNTHETIC: YES; SOURCE 27 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 28 ORGANISM_TAXID: 32630; SOURCE 29 MOL_ID: 5; SOURCE 30 SYNTHETIC: YES; SOURCE 31 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 32 ORGANISM_TAXID: 32630 KEYWDS RNA-DIRECTED 5'-3' RNA POLYMERASE ACTIVITY, POSITIVE STRANDED VIRAL KEYWDS 2 RNA REPLICATION, REPLICATION EXPDTA ELECTRON MICROSCOPY AUTHOR B.F.MALONE,J.K.PERRY,T.C.APPLEBY,J.Y.FENG,E.A.CAMPBELL,S.A.DARST REVDAT 4 08-MAR-23 7UO4 1 JRNL REVDAT 3 15-FEB-23 7UO4 1 JRNL REVDAT 2 01-FEB-23 7UO4 1 JRNL REVDAT 1 30-NOV-22 7UO4 0 JRNL AUTH B.F.MALONE,J.K.PERRY,P.D.B.OLINARES,H.W.LEE,J.CHEN, JRNL AUTH 2 T.C.APPLEBY,J.Y.FENG,J.P.BILELLO,H.NG,J.SOTIRIS,M.EBRAHIM, JRNL AUTH 3 E.Y.D.CHUA,J.H.MENDEZ,E.T.ENG,R.LANDICK,M.GOTTE,B.T.CHAIT, JRNL AUTH 4 E.A.CAMPBELL,S.A.DARST JRNL TITL STRUCTURAL BASIS FOR SUBSTRATE SELECTION BY THE SARS-COV-2 JRNL TITL 2 REPLICASE. JRNL REF NATURE V. 614 781 2023 JRNL REFN ESSN 1476-4687 JRNL PMID 36725929 JRNL DOI 10.1038/S41586-022-05664-3 REMARK 2 REMARK 2 RESOLUTION. 3.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.380 REMARK 3 NUMBER OF PARTICLES : 613848 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7UO4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-APR-22. REMARK 100 THE DEPOSITION ID IS D_1000264519. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : SARS-COV-2 REPLICATION REMARK 245 -TRANSCRIPTION COMPLEX REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5458.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, P, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 ALA A 2 REMARK 465 VAL A 930 REMARK 465 LEU A 931 REMARK 465 GLN A 932 REMARK 465 ALA B 1 REMARK 465 ILE B 2 REMARK 465 ALA B 3 REMARK 465 SER B 4 REMARK 465 GLU B 5 REMARK 465 SER B 193 REMARK 465 ALA B 194 REMARK 465 VAL B 195 REMARK 465 LYS B 196 REMARK 465 LEU B 197 REMARK 465 GLN B 198 REMARK 465 VAL C -8 REMARK 465 ALA C -7 REMARK 465 CYS C -6 REMARK 465 THR C -5 REMARK 465 LYS C -4 REMARK 465 GLU C -3 REMARK 465 VAL C -2 REMARK 465 HIS C -1 REMARK 465 MET C 0 REMARK 465 GLU C 74 REMARK 465 MET C 75 REMARK 465 LEU C 76 REMARK 465 ASP C 77 REMARK 465 ASN C 78 REMARK 465 ARG C 79 REMARK 465 ALA C 80 REMARK 465 THR C 81 REMARK 465 LEU C 82 REMARK 465 GLN C 83 REMARK 465 ALA D 1 REMARK 465 ILE D 2 REMARK 465 ALA D 3 REMARK 465 SER D 4 REMARK 465 GLU D 5 REMARK 465 SER D 193 REMARK 465 ALA D 194 REMARK 465 VAL D 195 REMARK 465 LYS D 196 REMARK 465 LEU D 197 REMARK 465 GLN D 198 REMARK 465 C P 1 REMARK 465 C T 82 REMARK 465 U T 83 REMARK 465 A T 84 REMARK 465 U T 85 REMARK 465 C T 86 REMARK 465 C T 87 REMARK 465 C T 88 REMARK 465 C T 89 REMARK 465 A T 90 REMARK 465 U T 91 REMARK 465 G T 92 REMARK 465 U T 93 REMARK 465 G T 94 REMARK 465 A T 95 REMARK 465 G T 96 REMARK 465 C T 97 REMARK 465 G T 98 REMARK 465 G T 99 REMARK 465 G T 136 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 3 CG OD1 OD2 REMARK 470 PHE B 6 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 20 CG CD OE1 OE2 REMARK 470 GLN B 24 CG CD OE1 NE2 REMARK 470 VAL B 26 CG1 CG2 REMARK 470 ASN B 28 CG OD1 ND2 REMARK 470 ASP B 30 CG OD1 OD2 REMARK 470 GLU B 32 CG CD OE1 OE2 REMARK 470 LEU B 35 CG CD1 CD2 REMARK 470 LYS B 39 CG CD CE NZ REMARK 470 ASN B 43 CG OD1 ND2 REMARK 470 PHE D 6 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER D 8 OG REMARK 470 GLU D 20 CG CD OE1 OE2 REMARK 470 GLU D 23 CG CD OE1 OE2 REMARK 470 GLN D 24 CG CD OE1 NE2 REMARK 470 ASN D 28 CG OD1 ND2 REMARK 470 ASP D 30 CG OD1 OD2 REMARK 470 LYS D 40 CG CD CE NZ REMARK 470 LEU D 42 CG CD1 CD2 REMARK 470 ASN D 43 CG OD1 ND2 REMARK 470 G P 35 O3' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP D 101 OG SER D 151 1.90 REMARK 500 O ILE B 120 OG1 THR B 124 1.98 REMARK 500 OG1 THR A 540 OE1 GLU A 665 2.08 REMARK 500 O HOH A 1160 O HOH A 1166 2.10 REMARK 500 NZ LYS A 807 O HOH A 1101 2.10 REMARK 500 OE1 GLN B 88 O HOH B 201 2.10 REMARK 500 OD2 ASP A 235 O HOH A 1102 2.13 REMARK 500 O TYR A 915 OH TYR A 921 2.13 REMARK 500 OD1 ASP A 418 OH TYR A 887 2.15 REMARK 500 OD2 ASP A 260 OG1 THR A 262 2.15 REMARK 500 OG1 THR A 123 O HOH A 1103 2.16 REMARK 500 NH2 ARG B 51 O3' G P 16 2.16 REMARK 500 NZ LYS A 478 OD1 ASN A 743 2.17 REMARK 500 OE2 GLU A 254 OH TYR A 286 2.17 REMARK 500 OH TYR A 129 O HOH A 1104 2.18 REMARK 500 OH TYR A 156 OD2 ASP A 170 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 26 35.16 71.54 REMARK 500 ALA A 95 53.70 -93.66 REMARK 500 ILE A 106 -61.86 -104.67 REMARK 500 LEU A 119 -168.75 -78.37 REMARK 500 CYS A 152 -177.20 -170.92 REMARK 500 TYR A 217 16.87 -140.00 REMARK 500 ASP A 221 36.23 -98.03 REMARK 500 ALA A 253 0.33 -65.49 REMARK 500 ASP A 258 18.61 59.71 REMARK 500 THR A 259 -3.14 69.99 REMARK 500 PHE A 287 57.07 -96.03 REMARK 500 PHE A 326 -168.79 -79.75 REMARK 500 LEU A 387 154.13 -48.15 REMARK 500 THR A 402 -168.31 -79.35 REMARK 500 LYS A 426 49.73 -84.73 REMARK 500 ASN A 447 37.92 -98.82 REMARK 500 ASP A 499 40.08 -108.11 REMARK 500 ASN A 552 33.77 -97.16 REMARK 500 VAL A 662 -53.68 -126.14 REMARK 500 SER A 672 141.47 -171.78 REMARK 500 PHE A 753 46.61 -140.40 REMARK 500 SER A 759 -115.73 59.25 REMARK 500 ASP A 824 -3.88 75.61 REMARK 500 SER A 904 91.18 -69.81 REMARK 500 ASP A 910 -6.43 80.19 REMARK 500 LEU B 9 154.25 67.54 REMARK 500 GLU B 32 -147.59 72.52 REMARK 500 ALA B 126 50.87 -93.16 REMARK 500 LYS B 127 149.57 -173.77 REMARK 500 SER C 4 1.51 -68.11 REMARK 500 LEU C 41 74.66 -100.82 REMARK 500 SER D 7 58.45 -94.81 REMARK 500 SER D 8 27.15 -141.56 REMARK 500 CYS D 114 52.88 -91.32 REMARK 500 SER D 173 115.96 -161.64 REMARK 500 MET D 174 -123.34 55.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1003 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 295 ND1 REMARK 620 2 CYS A 301 SG 124.4 REMARK 620 3 CYS A 306 SG 121.7 69.6 REMARK 620 4 CYS A 310 SG 134.7 84.2 99.9 REMARK 620 5 HOH A1160 O 112.6 119.5 64.4 67.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1004 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 487 SG REMARK 620 2 HIS A 642 ND1 103.0 REMARK 620 3 CYS A 645 SG 73.5 101.6 REMARK 620 4 CYS A 646 SG 80.4 174.4 74.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 618 OD2 REMARK 620 2 TYR A 619 O 132.5 REMARK 620 3 ASP A 760 OD2 110.1 102.5 REMARK 620 4 NWX A1001 O18 93.6 129.8 71.3 REMARK 620 5 NWX A1001 O23 141.5 66.8 92.5 63.8 REMARK 620 6 NWX A1001 O27 92.7 76.3 147.0 84.1 56.2 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-26639 RELATED DB: EMDB REMARK 900 SARS-COV-2 REPLICATION-TRANSCRIPTION COMPLEX BOUND TO REMDESIVIR REMARK 900 TRIPHOSPHATE, IN A PRE-CATALYTIC STATE. DBREF 7UO4 A 1 932 UNP P0DTD1 R1AB_SARS2 4393 5324 DBREF 7UO4 B 1 198 UNP P0DTD1 R1AB_SARS2 3943 4140 DBREF 7UO4 C 1 83 UNP P0DTD1 R1AB_SARS2 3860 3942 DBREF 7UO4 D 1 198 UNP P0DTD1 R1AB_SARS2 3943 4140 DBREF 7UO4 P 1 35 PDB 7UO4 7UO4 1 35 DBREF 7UO4 T 82 136 PDB 7UO4 7UO4 82 136 SEQADV 7UO4 VAL C -8 UNP P0DTD1 EXPRESSION TAG SEQADV 7UO4 ALA C -7 UNP P0DTD1 EXPRESSION TAG SEQADV 7UO4 CYS C -6 UNP P0DTD1 EXPRESSION TAG SEQADV 7UO4 THR C -5 UNP P0DTD1 EXPRESSION TAG SEQADV 7UO4 LYS C -4 UNP P0DTD1 EXPRESSION TAG SEQADV 7UO4 GLU C -3 UNP P0DTD1 EXPRESSION TAG SEQADV 7UO4 VAL C -2 UNP P0DTD1 EXPRESSION TAG SEQADV 7UO4 HIS C -1 UNP P0DTD1 EXPRESSION TAG SEQADV 7UO4 MET C 0 UNP P0DTD1 EXPRESSION TAG SEQRES 1 A 932 SER ALA ASP ALA GLN SER PHE LEU ASN ARG VAL CYS GLY SEQRES 2 A 932 VAL SER ALA ALA ARG LEU THR PRO CYS GLY THR GLY THR SEQRES 3 A 932 SER THR ASP VAL VAL TYR ARG ALA PHE ASP ILE TYR ASN SEQRES 4 A 932 ASP LYS VAL ALA GLY PHE ALA LYS PHE LEU LYS THR ASN SEQRES 5 A 932 CYS CYS ARG PHE GLN GLU LYS ASP GLU ASP ASP ASN LEU SEQRES 6 A 932 ILE ASP SER TYR PHE VAL VAL LYS ARG HIS THR PHE SER SEQRES 7 A 932 ASN TYR GLN HIS GLU GLU THR ILE TYR ASN LEU LEU LYS SEQRES 8 A 932 ASP CYS PRO ALA VAL ALA LYS HIS ASP PHE PHE LYS PHE SEQRES 9 A 932 ARG ILE ASP GLY ASP MET VAL PRO HIS ILE SER ARG GLN SEQRES 10 A 932 ARG LEU THR LYS TYR THR MET ALA ASP LEU VAL TYR ALA SEQRES 11 A 932 LEU ARG HIS PHE ASP GLU GLY ASN CYS ASP THR LEU LYS SEQRES 12 A 932 GLU ILE LEU VAL THR TYR ASN CYS CYS ASP ASP ASP TYR SEQRES 13 A 932 PHE ASN LYS LYS ASP TRP TYR ASP PHE VAL GLU ASN PRO SEQRES 14 A 932 ASP ILE LEU ARG VAL TYR ALA ASN LEU GLY GLU ARG VAL SEQRES 15 A 932 ARG GLN ALA LEU LEU LYS THR VAL GLN PHE CYS ASP ALA SEQRES 16 A 932 MET ARG ASN ALA GLY ILE VAL GLY VAL LEU THR LEU ASP SEQRES 17 A 932 ASN GLN ASP LEU ASN GLY ASN TRP TYR ASP PHE GLY ASP SEQRES 18 A 932 PHE ILE GLN THR THR PRO GLY SER GLY VAL PRO VAL VAL SEQRES 19 A 932 ASP SER TYR TYR SER LEU LEU MET PRO ILE LEU THR LEU SEQRES 20 A 932 THR ARG ALA LEU THR ALA GLU SER HIS VAL ASP THR ASP SEQRES 21 A 932 LEU THR LYS PRO TYR ILE LYS TRP ASP LEU LEU LYS TYR SEQRES 22 A 932 ASP PHE THR GLU GLU ARG LEU LYS LEU PHE ASP ARG TYR SEQRES 23 A 932 PHE LYS TYR TRP ASP GLN THR TYR HIS PRO ASN CYS VAL SEQRES 24 A 932 ASN CYS LEU ASP ASP ARG CYS ILE LEU HIS CYS ALA ASN SEQRES 25 A 932 PHE ASN VAL LEU PHE SER THR VAL PHE PRO PRO THR SER SEQRES 26 A 932 PHE GLY PRO LEU VAL ARG LYS ILE PHE VAL ASP GLY VAL SEQRES 27 A 932 PRO PHE VAL VAL SER THR GLY TYR HIS PHE ARG GLU LEU SEQRES 28 A 932 GLY VAL VAL HIS ASN GLN ASP VAL ASN LEU HIS SER SER SEQRES 29 A 932 ARG LEU SER PHE LYS GLU LEU LEU VAL TYR ALA ALA ASP SEQRES 30 A 932 PRO ALA MET HIS ALA ALA SER GLY ASN LEU LEU LEU ASP SEQRES 31 A 932 LYS ARG THR THR CYS PHE SER VAL ALA ALA LEU THR ASN SEQRES 32 A 932 ASN VAL ALA PHE GLN THR VAL LYS PRO GLY ASN PHE ASN SEQRES 33 A 932 LYS ASP PHE TYR ASP PHE ALA VAL SER LYS GLY PHE PHE SEQRES 34 A 932 LYS GLU GLY SER SER VAL GLU LEU LYS HIS PHE PHE PHE SEQRES 35 A 932 ALA GLN ASP GLY ASN ALA ALA ILE SER ASP TYR ASP TYR SEQRES 36 A 932 TYR ARG TYR ASN LEU PRO THR MET CYS ASP ILE ARG GLN SEQRES 37 A 932 LEU LEU PHE VAL VAL GLU VAL VAL ASP LYS TYR PHE ASP SEQRES 38 A 932 CYS TYR ASP GLY GLY CYS ILE ASN ALA ASN GLN VAL ILE SEQRES 39 A 932 VAL ASN ASN LEU ASP LYS SER ALA GLY PHE PRO PHE ASN SEQRES 40 A 932 LYS TRP GLY LYS ALA ARG LEU TYR TYR ASP SER MET SER SEQRES 41 A 932 TYR GLU ASP GLN ASP ALA LEU PHE ALA TYR THR LYS ARG SEQRES 42 A 932 ASN VAL ILE PRO THR ILE THR GLN MET ASN LEU LYS TYR SEQRES 43 A 932 ALA ILE SER ALA LYS ASN ARG ALA ARG THR VAL ALA GLY SEQRES 44 A 932 VAL SER ILE CYS SER THR MET THR ASN ARG GLN PHE HIS SEQRES 45 A 932 GLN LYS LEU LEU LYS SER ILE ALA ALA THR ARG GLY ALA SEQRES 46 A 932 THR VAL VAL ILE GLY THR SER LYS PHE TYR GLY GLY TRP SEQRES 47 A 932 HIS ASN MET LEU LYS THR VAL TYR SER ASP VAL GLU ASN SEQRES 48 A 932 PRO HIS LEU MET GLY TRP ASP TYR PRO LYS CYS ASP ARG SEQRES 49 A 932 ALA MET PRO ASN MET LEU ARG ILE MET ALA SER LEU VAL SEQRES 50 A 932 LEU ALA ARG LYS HIS THR THR CYS CYS SER LEU SER HIS SEQRES 51 A 932 ARG PHE TYR ARG LEU ALA ASN GLU CYS ALA GLN VAL LEU SEQRES 52 A 932 SER GLU MET VAL MET CYS GLY GLY SER LEU TYR VAL LYS SEQRES 53 A 932 PRO GLY GLY THR SER SER GLY ASP ALA THR THR ALA TYR SEQRES 54 A 932 ALA ASN SER VAL PHE ASN ILE CYS GLN ALA VAL THR ALA SEQRES 55 A 932 ASN VAL ASN ALA LEU LEU SER THR ASP GLY ASN LYS ILE SEQRES 56 A 932 ALA ASP LYS TYR VAL ARG ASN LEU GLN HIS ARG LEU TYR SEQRES 57 A 932 GLU CYS LEU TYR ARG ASN ARG ASP VAL ASP THR ASP PHE SEQRES 58 A 932 VAL ASN GLU PHE TYR ALA TYR LEU ARG LYS HIS PHE SER SEQRES 59 A 932 MET MET ILE LEU SER ASP ASP ALA VAL VAL CYS PHE ASN SEQRES 60 A 932 SER THR TYR ALA SER GLN GLY LEU VAL ALA SER ILE LYS SEQRES 61 A 932 ASN PHE LYS SER VAL LEU TYR TYR GLN ASN ASN VAL PHE SEQRES 62 A 932 MET SER GLU ALA LYS CYS TRP THR GLU THR ASP LEU THR SEQRES 63 A 932 LYS GLY PRO HIS GLU PHE CYS SER GLN HIS THR MET LEU SEQRES 64 A 932 VAL LYS GLN GLY ASP ASP TYR VAL TYR LEU PRO TYR PRO SEQRES 65 A 932 ASP PRO SER ARG ILE LEU GLY ALA GLY CYS PHE VAL ASP SEQRES 66 A 932 ASP ILE VAL LYS THR ASP GLY THR LEU MET ILE GLU ARG SEQRES 67 A 932 PHE VAL SER LEU ALA ILE ASP ALA TYR PRO LEU THR LYS SEQRES 68 A 932 HIS PRO ASN GLN GLU TYR ALA ASP VAL PHE HIS LEU TYR SEQRES 69 A 932 LEU GLN TYR ILE ARG LYS LEU HIS ASP GLU LEU THR GLY SEQRES 70 A 932 HIS MET LEU ASP MET TYR SER VAL MET LEU THR ASN ASP SEQRES 71 A 932 ASN THR SER ARG TYR TRP GLU PRO GLU PHE TYR GLU ALA SEQRES 72 A 932 MET TYR THR PRO HIS THR VAL LEU GLN SEQRES 1 B 198 ALA ILE ALA SER GLU PHE SER SER LEU PRO SER TYR ALA SEQRES 2 B 198 ALA PHE ALA THR ALA GLN GLU ALA TYR GLU GLN ALA VAL SEQRES 3 B 198 ALA ASN GLY ASP SER GLU VAL VAL LEU LYS LYS LEU LYS SEQRES 4 B 198 LYS SER LEU ASN VAL ALA LYS SER GLU PHE ASP ARG ASP SEQRES 5 B 198 ALA ALA MET GLN ARG LYS LEU GLU LYS MET ALA ASP GLN SEQRES 6 B 198 ALA MET THR GLN MET TYR LYS GLN ALA ARG SER GLU ASP SEQRES 7 B 198 LYS ARG ALA LYS VAL THR SER ALA MET GLN THR MET LEU SEQRES 8 B 198 PHE THR MET LEU ARG LYS LEU ASP ASN ASP ALA LEU ASN SEQRES 9 B 198 ASN ILE ILE ASN ASN ALA ARG ASP GLY CYS VAL PRO LEU SEQRES 10 B 198 ASN ILE ILE PRO LEU THR THR ALA ALA LYS LEU MET VAL SEQRES 11 B 198 VAL ILE PRO ASP TYR ASN THR TYR LYS ASN THR CYS ASP SEQRES 12 B 198 GLY THR THR PHE THR TYR ALA SER ALA LEU TRP GLU ILE SEQRES 13 B 198 GLN GLN VAL VAL ASP ALA ASP SER LYS ILE VAL GLN LEU SEQRES 14 B 198 SER GLU ILE SER MET ASP ASN SER PRO ASN LEU ALA TRP SEQRES 15 B 198 PRO LEU ILE VAL THR ALA LEU ARG ALA ASN SER ALA VAL SEQRES 16 B 198 LYS LEU GLN SEQRES 1 C 92 VAL ALA CYS THR LYS GLU VAL HIS MET SER LYS MET SER SEQRES 2 C 92 ASP VAL LYS CYS THR SER VAL VAL LEU LEU SER VAL LEU SEQRES 3 C 92 GLN GLN LEU ARG VAL GLU SER SER SER LYS LEU TRP ALA SEQRES 4 C 92 GLN CYS VAL GLN LEU HIS ASN ASP ILE LEU LEU ALA LYS SEQRES 5 C 92 ASP THR THR GLU ALA PHE GLU LYS MET VAL SER LEU LEU SEQRES 6 C 92 SER VAL LEU LEU SER MET GLN GLY ALA VAL ASP ILE ASN SEQRES 7 C 92 LYS LEU CYS GLU GLU MET LEU ASP ASN ARG ALA THR LEU SEQRES 8 C 92 GLN SEQRES 1 D 198 ALA ILE ALA SER GLU PHE SER SER LEU PRO SER TYR ALA SEQRES 2 D 198 ALA PHE ALA THR ALA GLN GLU ALA TYR GLU GLN ALA VAL SEQRES 3 D 198 ALA ASN GLY ASP SER GLU VAL VAL LEU LYS LYS LEU LYS SEQRES 4 D 198 LYS SER LEU ASN VAL ALA LYS SER GLU PHE ASP ARG ASP SEQRES 5 D 198 ALA ALA MET GLN ARG LYS LEU GLU LYS MET ALA ASP GLN SEQRES 6 D 198 ALA MET THR GLN MET TYR LYS GLN ALA ARG SER GLU ASP SEQRES 7 D 198 LYS ARG ALA LYS VAL THR SER ALA MET GLN THR MET LEU SEQRES 8 D 198 PHE THR MET LEU ARG LYS LEU ASP ASN ASP ALA LEU ASN SEQRES 9 D 198 ASN ILE ILE ASN ASN ALA ARG ASP GLY CYS VAL PRO LEU SEQRES 10 D 198 ASN ILE ILE PRO LEU THR THR ALA ALA LYS LEU MET VAL SEQRES 11 D 198 VAL ILE PRO ASP TYR ASN THR TYR LYS ASN THR CYS ASP SEQRES 12 D 198 GLY THR THR PHE THR TYR ALA SER ALA LEU TRP GLU ILE SEQRES 13 D 198 GLN GLN VAL VAL ASP ALA ASP SER LYS ILE VAL GLN LEU SEQRES 14 D 198 SER GLU ILE SER MET ASP ASN SER PRO ASN LEU ALA TRP SEQRES 15 D 198 PRO LEU ILE VAL THR ALA LEU ARG ALA ASN SER ALA VAL SEQRES 16 D 198 LYS LEU GLN SEQRES 1 P 35 C G C G U A G C A U G C U SEQRES 2 P 35 A C G U C A U U C U C C U SEQRES 3 P 35 A A G A A G C U G SEQRES 1 T 55 C U A U C C C C A U G U G SEQRES 2 T 55 A G C G G C U C A G C U U SEQRES 3 T 55 C U U A G G A G A A U G A SEQRES 4 T 55 C G U A G C A U G C U A C SEQRES 5 T 55 G C G HET NWX A1001 33 HET MG A1002 1 HET ZN A1003 1 HET ZN A1004 1 HETNAM NWX [[(2~{R},3~{S},4~{R},5~{R})-5-(4-AZANYLPYRROLO[2,1- HETNAM 2 NWX F][1,2,4]TRIAZIN-7-YL)-5-CYANO-3,4-BIS(OXIDANYL) HETNAM 3 NWX OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL] PHOSPHONO HETNAM 4 NWX HYDROGEN PHOSPHATE HETNAM MG MAGNESIUM ION HETNAM ZN ZINC ION HETSYN NWX REMDESIVIR TRIPHOSPHATE FORMUL 7 NWX C12 H16 N5 O13 P3 FORMUL 8 MG MG 2+ FORMUL 9 ZN 2(ZN 2+) FORMUL 11 HOH *91(H2 O) HELIX 1 AA1 ASP A 3 CYS A 12 1 10 HELIX 2 AA2 THR A 76 LEU A 89 1 14 HELIX 3 AA3 THR A 123 HIS A 133 1 11 HELIX 4 AA4 CYS A 139 TYR A 149 1 11 HELIX 5 AA5 ASP A 155 LYS A 159 5 5 HELIX 6 AA6 ASP A 170 ASN A 177 1 8 HELIX 7 AA7 LEU A 178 ALA A 199 1 22 HELIX 8 AA8 THR A 206 GLN A 210 5 5 HELIX 9 AA9 PRO A 243 THR A 248 1 6 HELIX 10 AB1 LEU A 251 SER A 255 5 5 HELIX 11 AB2 HIS A 256 ASP A 260 5 5 HELIX 12 AB3 PHE A 275 PHE A 287 1 13 HELIX 13 AB4 ASN A 297 CYS A 301 5 5 HELIX 14 AB5 ASP A 303 SER A 318 1 16 HELIX 15 AB6 SER A 367 ASP A 377 1 11 HELIX 16 AB7 ASP A 377 SER A 384 1 8 HELIX 17 AB8 ASN A 416 LYS A 426 1 11 HELIX 18 AB9 ASN A 447 TYR A 455 1 9 HELIX 19 AC1 TYR A 456 ASN A 459 5 4 HELIX 20 AC2 ASP A 465 TYR A 479 1 15 HELIX 21 AC3 ASN A 489 VAL A 493 5 5 HELIX 22 AC4 PRO A 505 TRP A 509 5 5 HELIX 23 AC5 LYS A 511 SER A 518 1 8 HELIX 24 AC6 SER A 520 LYS A 532 1 13 HELIX 25 AC7 SER A 561 ALA A 581 1 21 HELIX 26 AC8 GLY A 596 TYR A 606 1 11 HELIX 27 AC9 PRO A 627 ALA A 639 1 13 HELIX 28 AD1 SER A 647 VAL A 662 1 16 HELIX 29 AD2 TYR A 689 SER A 709 1 21 HELIX 30 AD3 ASP A 717 ARG A 733 1 17 HELIX 31 AD4 ASP A 738 PHE A 753 1 16 HELIX 32 AD5 SER A 768 GLY A 774 1 7 HELIX 33 AD6 SER A 778 ASN A 790 1 13 HELIX 34 AD7 SER A 795 ALA A 797 5 3 HELIX 35 AD8 ASP A 804 GLY A 808 5 5 HELIX 36 AD9 ASP A 833 CYS A 842 1 10 HELIX 37 AE1 ILE A 847 GLY A 852 5 6 HELIX 38 AE2 MET A 855 TYR A 867 1 13 HELIX 39 AE3 PRO A 868 HIS A 872 5 5 HELIX 40 AE4 ASN A 874 TYR A 903 1 30 HELIX 41 AE5 GLU A 917 ALA A 923 1 7 HELIX 42 AE6 MET A 924 THR A 926 5 3 HELIX 43 AE7 SER B 8 GLY B 29 1 22 HELIX 44 AE8 SER B 31 ARG B 96 1 66 HELIX 45 AE9 ASP B 99 ASN B 109 1 11 HELIX 46 AF1 ASN B 118 ALA B 125 1 8 HELIX 47 AF2 ASP B 134 CYS B 142 1 9 HELIX 48 AF3 ASP C 5 LEU C 20 1 16 HELIX 49 AF4 SER C 25 LEU C 41 1 17 HELIX 50 AF5 THR C 45 MET C 62 1 18 HELIX 51 AF6 ASP C 67 GLU C 73 1 7 HELIX 52 AF7 LEU D 9 GLY D 29 1 21 HELIX 53 AF8 SER D 31 LYS D 82 1 52 HELIX 54 AF9 VAL D 83 ASP D 99 1 17 HELIX 55 AG1 ASN D 100 ASP D 112 1 13 HELIX 56 AG2 ASP D 134 THR D 141 1 8 HELIX 57 AG3 GLN D 168 ILE D 172 5 5 HELIX 58 AG4 SER D 173 LEU D 180 5 8 SHEET 1 AA1 3 ARG A 18 PRO A 21 0 SHEET 2 AA1 3 ALA A 43 ASP A 60 -1 O LYS A 59 N ARG A 18 SHEET 3 AA1 3 ASP A 29 TYR A 38 -1 N ASP A 29 O CYS A 53 SHEET 1 AA2 5 ARG A 18 PRO A 21 0 SHEET 2 AA2 5 ALA A 43 ASP A 60 -1 O LYS A 59 N ARG A 18 SHEET 3 AA2 5 ASN A 64 ARG A 74 -1 O PHE A 70 N PHE A 56 SHEET 4 AA2 5 MET A 110 LEU A 119 -1 O ILE A 114 N LYS A 73 SHEET 5 AA2 5 HIS A 99 ARG A 105 -1 N PHE A 102 O HIS A 113 SHEET 1 AA3 2 ILE A 201 VAL A 202 0 SHEET 2 AA3 2 ILE A 223 GLN A 224 -1 O ILE A 223 N VAL A 202 SHEET 1 AA4 3 VAL A 342 SER A 343 0 SHEET 2 AA4 3 LEU A 329 ARG A 331 -1 N ARG A 331 O VAL A 342 SHEET 3 AA4 3 VAL B 115 PRO B 116 -1 O VAL B 115 N VAL A 330 SHEET 1 AA5 2 PHE A 334 VAL A 335 0 SHEET 2 AA5 2 VAL A 338 PRO A 339 -1 O VAL A 338 N VAL A 335 SHEET 1 AA6 2 TYR A 346 HIS A 347 0 SHEET 2 AA6 2 VAL A 353 VAL A 354 -1 O VAL A 354 N TYR A 346 SHEET 1 AA7 5 SER A 397 ALA A 399 0 SHEET 2 AA7 5 LEU A 673 VAL A 675 -1 O LEU A 673 N VAL A 398 SHEET 3 AA7 5 MET A 666 MET A 668 -1 N VAL A 667 O TYR A 674 SHEET 4 AA7 5 ILE A 539 LEU A 544 1 N THR A 540 O MET A 668 SHEET 5 AA7 5 THR A 556 GLY A 559 -1 O VAL A 557 N ASN A 543 SHEET 1 AA8 2 ASN A 414 PHE A 415 0 SHEET 2 AA8 2 PHE A 843 VAL A 844 -1 O VAL A 844 N ASN A 414 SHEET 1 AA9 4 MET A 755 LEU A 758 0 SHEET 2 AA9 4 ASP A 761 ASN A 767 -1 O ASP A 761 N LEU A 758 SHEET 3 AA9 4 PRO A 612 ASP A 618 -1 N MET A 615 O VAL A 764 SHEET 4 AA9 4 CYS A 799 THR A 801 -1 O TRP A 800 N GLY A 616 SHEET 1 AB1 2 HIS A 816 GLN A 822 0 SHEET 2 AB1 2 ASP A 825 TYR A 831 -1 O VAL A 827 N VAL A 820 SHEET 1 AB2 4 LEU B 128 ILE B 132 0 SHEET 2 AB2 4 LEU B 184 ARG B 190 -1 O VAL B 186 N VAL B 130 SHEET 3 AB2 4 ALA B 152 VAL B 160 -1 N VAL B 160 O ILE B 185 SHEET 4 AB2 4 THR B 146 TYR B 149 -1 N TYR B 149 O ALA B 152 SHEET 1 AB3 5 LYS D 127 ILE D 132 0 SHEET 2 AB3 5 LEU D 184 ARG D 190 -1 O VAL D 186 N VAL D 130 SHEET 3 AB3 5 LEU D 153 ILE D 156 -1 N GLU D 155 O LEU D 189 SHEET 4 AB3 5 THR D 146 THR D 148 -1 N PHE D 147 O TRP D 154 SHEET 5 AB3 5 CYS D 142 ASP D 143 -1 N ASP D 143 O THR D 146 SSBOND 1 CYS A 301 CYS A 306 1555 1555 2.66 SSBOND 2 CYS A 487 CYS A 645 1555 1555 2.76 SSBOND 3 CYS A 487 CYS A 646 1555 1555 2.96 SSBOND 4 CYS A 645 CYS A 646 1555 1555 2.81 LINK ND1 HIS A 295 ZN ZN A1003 1555 1555 2.23 LINK SG CYS A 301 ZN ZN A1003 1555 1555 2.33 LINK SG CYS A 306 ZN ZN A1003 1555 1555 2.33 LINK SG CYS A 310 ZN ZN A1003 1555 1555 2.30 LINK SG CYS A 487 ZN ZN A1004 1555 1555 2.29 LINK OD2 ASP A 618 MG MG A1002 1555 1555 2.12 LINK O TYR A 619 MG MG A1002 1555 1555 2.70 LINK ND1 HIS A 642 ZN ZN A1004 1555 1555 2.00 LINK SG CYS A 645 ZN ZN A1004 1555 1555 2.32 LINK SG CYS A 646 ZN ZN A1004 1555 1555 2.30 LINK OD2 ASP A 760 MG MG A1002 1555 1555 2.41 LINK O18 NWX A1001 MG MG A1002 1555 1555 2.65 LINK O23 NWX A1001 MG MG A1002 1555 1555 2.34 LINK O27 NWX A1001 MG MG A1002 1555 1555 2.82 LINK ZN ZN A1003 O HOH A1160 1555 1555 1.89 CISPEP 1 PHE A 504 PRO A 505 0 -1.52 CISPEP 2 TRP B 182 PRO B 183 0 2.25 CISPEP 3 TRP D 182 PRO D 183 0 -2.83 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000