HEADER HYDROLASE 12-APR-22 7UOF TITLE DIHYDROOROTASE FROM M. JANNASCHII COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROOROTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DHOASE; COMPND 5 EC: 3.5.2.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 2190; SOURCE 4 ATCC: 624773; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA-GAMI2 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET-21A KEYWDS HYDROLASE, DE NOVO PYRIMIDINE BIOSYNTHESIS, AMIDOHYDROLASE KEYWDS 2 SUPERFAMILY, METALLOENZYME, ZINC BINDING, HISTIDINATE ANION EXPDTA X-RAY DIFFRACTION AUTHOR J.VITALI,J.C.NIX,H.E.NEWMAN,M.J.COLANERI REVDAT 4 15-NOV-23 7UOF 1 REMARK REVDAT 3 25-OCT-23 7UOF 1 REMARK REVDAT 2 28-DEC-22 7UOF 1 JRNL REVDAT 1 31-AUG-22 7UOF 0 JRNL AUTH J.VITALI,J.C.NIX,H.E.NEWMAN,M.J.COLANERI JRNL TITL CRYSTAL STRUCTURE OF METHANOCOCCUS JANNASCHII JRNL TITL 2 DIHYDROOROTASE. JRNL REF PROTEINS V. 91 91 2023 JRNL REFN ESSN 1097-0134 JRNL PMID 35978488 JRNL DOI 10.1002/PROT.26412 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 57234 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.720 REMARK 3 FREE R VALUE TEST SET COUNT : 2703 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.1800 - 5.0700 1.00 3031 160 0.1617 0.2178 REMARK 3 2 5.0700 - 4.0200 1.00 2972 119 0.1372 0.1635 REMARK 3 3 4.0200 - 3.5100 1.00 2912 144 0.1440 0.1829 REMARK 3 4 3.5100 - 3.1900 1.00 2873 162 0.1592 0.1903 REMARK 3 5 3.1900 - 2.9600 1.00 2915 116 0.1650 0.2024 REMARK 3 6 2.9600 - 2.7900 1.00 2854 154 0.1681 0.1895 REMARK 3 7 2.7900 - 2.6500 1.00 2856 154 0.1804 0.1920 REMARK 3 8 2.6500 - 2.5300 1.00 2883 129 0.1746 0.2204 REMARK 3 9 2.5300 - 2.4400 1.00 2876 141 0.1771 0.2018 REMARK 3 10 2.4400 - 2.3500 1.00 2839 136 0.1744 0.2032 REMARK 3 11 2.3500 - 2.2800 1.00 2883 134 0.1859 0.2293 REMARK 3 12 2.2800 - 2.2100 1.00 2830 153 0.2012 0.2472 REMARK 3 13 2.2100 - 2.1600 1.00 2857 132 0.2224 0.2872 REMARK 3 14 2.1600 - 2.1000 1.00 2823 165 0.2415 0.2627 REMARK 3 15 2.1000 - 2.0600 1.00 2847 132 0.2587 0.3200 REMARK 3 16 2.0600 - 2.0100 1.00 2859 149 0.2731 0.2646 REMARK 3 17 2.0100 - 1.9700 0.99 2796 149 0.2925 0.3334 REMARK 3 18 1.9700 - 1.9300 0.99 2849 129 0.3057 0.3118 REMARK 3 19 1.9300 - 1.9000 0.98 2776 145 0.3336 0.3606 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.229 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.819 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3449 REMARK 3 ANGLE : 0.936 4641 REMARK 3 CHIRALITY : 0.060 527 REMARK 3 PLANARITY : 0.006 589 REMARK 3 DIHEDRAL : 7.139 445 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7UOF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-APR-22. REMARK 100 THE DEPOSITION ID IS D_1000264239. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57394 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 48.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : 0.23900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.00 REMARK 200 R MERGE FOR SHELL (I) : 3.18800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3MPG REMARK 200 REMARK 200 REMARK: TRIANGULAR PRISM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% PEG400, 0.1 M NA HEPES PH 7.5, 0.1 REMARK 280 M ZN ACETATE., VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.48867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.74433 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 33.74433 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 67.48867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 248 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 380 O HOH A 601 1.85 REMARK 500 NZ LYS A 211 O HOH A 602 1.91 REMARK 500 OE1 GLU A 243 O HOH A 602 2.09 REMARK 500 O HOH A 812 O HOH A 819 2.10 REMARK 500 OE2 GLU A 232 O HOH A 603 2.11 REMARK 500 OE2 GLU A 365 O HOH A 604 2.12 REMARK 500 OD2 ASP A 157 O HOH A 605 2.12 REMARK 500 O HOH A 804 O HOH A 807 2.14 REMARK 500 O HOH A 644 O HOH A 757 2.15 REMARK 500 O HOH A 812 O HOH A 814 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 802 O HOH A 818 4556 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 11 -118.11 73.01 REMARK 500 HIS A 56 89.97 -153.91 REMARK 500 GLU A 67 150.67 178.65 REMARK 500 SER A 143 -85.86 -116.40 REMARK 500 PHE A 148 117.82 172.67 REMARK 500 HIS A 227 69.64 24.69 REMARK 500 LYS A 269 -136.50 51.54 REMARK 500 ARG A 279 -159.40 -112.53 REMARK 500 SER A 351 -52.08 -137.04 REMARK 500 CYS A 421 41.11 -91.38 REMARK 500 LYS A 422 26.73 -173.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 507 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 1 N REMARK 620 2 GLU A 23 OE1 155.3 REMARK 620 3 GLU A 23 OE2 98.1 57.9 REMARK 620 4 HOH A 616 O 90.6 95.7 92.6 REMARK 620 5 HOH A 631 O 128.3 75.6 133.4 90.6 REMARK 620 6 HOH A 733 O 91.9 85.1 94.4 172.1 82.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 510 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 37 OD2 REMARK 620 2 LYS A 102 NZ 83.0 REMARK 620 3 ASP A 106 OD2 81.9 2.7 REMARK 620 4 HOH A 606 O 71.2 92.2 89.6 REMARK 620 5 HOH A 625 O 108.1 59.8 62.5 151.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 505 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 39 OE2 REMARK 620 2 ASP A 68 OD2 72.6 REMARK 620 3 HOH A 734 O 77.3 5.4 REMARK 620 4 HOH A 802 O 76.6 4.1 2.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 56 NE2 REMARK 620 2 HIS A 58 NE2 111.4 REMARK 620 3 KCX A 137 OQ2 90.5 93.6 REMARK 620 4 ASP A 302 OD1 84.3 86.7 174.5 REMARK 620 5 HOH A 692 O 123.1 124.1 97.3 87.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 KCX A 137 OQ1 REMARK 620 2 HIS A 168 ND1 108.3 REMARK 620 3 HIS A 227 NE2 110.8 94.9 REMARK 620 4 HOH A 692 O 107.2 125.9 108.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 157 OD1 REMARK 620 2 ASP A 157 OD2 55.0 REMARK 620 3 GLU A 380 OE1 28.3 36.6 REMARK 620 4 GLU A 380 OE2 30.5 35.2 2.2 REMARK 620 5 HOH A 601 O 31.6 35.2 3.3 1.3 REMARK 620 6 HOH A 605 O 29.0 38.3 2.4 3.1 3.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 196 OE1 REMARK 620 2 GLU A 196 OE2 58.7 REMARK 620 3 LYS A 231 NZ 90.4 145.5 REMARK 620 4 GLU A 280 OE1 125.1 91.8 95.0 REMARK 620 5 ASP A 283 OD2 119.9 93.0 117.3 105.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 506 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 211 NZ REMARK 620 2 GLU A 243 OE2 140.8 REMARK 620 3 GLU A 386 OE1 108.2 84.4 REMARK 620 4 GLU A 386 OE2 109.3 82.1 2.4 REMARK 620 5 HOH A 602 O 55.5 101.6 159.8 159.5 REMARK 620 6 HOH A 623 O 96.0 107.5 26.0 28.4 149.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 511 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 222 ND1 REMARK 620 2 HOH A 615 O 104.6 REMARK 620 3 HOH A 743 O 98.2 145.3 REMARK 620 4 HOH A 785 O 93.8 126.7 76.5 REMARK 620 5 HOH A 810 O 114.4 69.5 77.3 143.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 508 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 280 OE2 REMARK 620 2 GLU A 309 OE2 31.7 REMARK 620 3 LYS A 313 NZ 36.2 4.7 REMARK 620 4 HOH A 798 O 36.9 5.3 2.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 509 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 309 OE1 REMARK 620 2 ASP A 310 OD1 93.1 REMARK 620 3 HOH A 661 O 87.9 128.0 REMARK 620 4 HOH A 668 O 151.5 80.0 75.4 REMARK 620 5 HOH A 798 O 104.9 130.3 99.0 100.5 REMARK 620 N 1 2 3 4 DBREF 7UOF A 1 423 UNP Q58885 PYRC_METJA 1 423 SEQRES 1 A 423 MET LEU LEU LYS ASN CYS ARG ILE ILE LYS ASP ASN LYS SEQRES 2 A 423 ILE ILE GLU GLY ASP ILE LEU ILE ASP GLU ASN GLY ARG SEQRES 3 A 423 ILE LYS LYS ILE ALA LYS ASP ILE LYS VAL ASP ASP GLU SEQRES 4 A 423 ILE ILE ASP ILE LYS ASN SER LEU VAL ILE PRO GLY VAL SEQRES 5 A 423 ILE ASP ALA HIS VAL HIS PHE ARG TRP GLY GLU GLU LYS SEQRES 6 A 423 LYS GLU ASP PHE LEU SER GLY SER LEU ALA GLY ILE ASN SEQRES 7 A 423 GLY GLY VAL CYS PHE ALA ILE ASP MET PRO ASN ASN LYS SEQRES 8 A 423 PRO PRO ILE THR THR LYS GLU LEU PHE TYR LYS LYS LEU SEQRES 9 A 423 GLU ASP CYS LYS LYS ASP SER LYS ILE ASN VAL PHE LEU SEQRES 10 A 423 ASN PHE GLY VAL THR GLU ASN ASN TYR LEU GLY THR VAL SEQRES 11 A 423 GLU ASP ALA LYS ALA TYR KCX ILE PHE MET VAL LYS SER SEQRES 12 A 423 VAL GLY ASP LEU PHE ILE GLU ASP TYR SER LYS LEU LYS SEQRES 13 A 423 ASP ILE LEU ASN GLN ASN LYS LEU PHE CYS ILE HIS ALA SEQRES 14 A 423 GLU HIS LYS ASP VAL ILE ASN GLU ASN LEU LYS LYS TYR SEQRES 15 A 423 GLN LEU ASN SER TRP ILE ASP HIS CYS LYS ILE ARG ASP SEQRES 16 A 423 GLU LYS SER GLU VAL GLU ALA VAL LYS GLU VAL ILE LYS SEQRES 17 A 423 ASN LEU LYS ILE ILE ASP ARG GLN SER ASN LYS LYS PRO SEQRES 18 A 423 HIS VAL HIS PHE CYS HIS ILE SER THR LYS GLU ALA LEU SEQRES 19 A 423 TYR LEU ILE LYS LYS VAL ARG GLN GLU LEU LYS ASN ILE SEQRES 20 A 423 LYS ILE THR VAL GLU VAL THR PRO HIS HIS ILE TYR LEU SEQRES 21 A 423 ASN LYS ASP MET ALA GLU GLU LEU LYS GLY PHE GLY LYS SEQRES 22 A 423 PHE ASN PRO PRO LEU ARG GLU LYS ASP ASP ASN ILE ALA SEQRES 23 A 423 LEU ILE LYS GLY ILE VAL ASN LYS ASP VAL ASP ILE ILE SEQRES 24 A 423 ALA SER ASP HIS ALA PRO HIS LEU LEU GLU ASP LYS LEU SEQRES 25 A 423 LYS ASN VAL LYS ASN CYS PRO SER GLY ILE PRO GLY ILE SEQRES 26 A 423 GLU THR ILE VAL PRO LEU THR LEU ASN LEU VAL ASN LYS SEQRES 27 A 423 GLY LEU ILE SER LEU PHE ASP ALA ILE ARG VAL LEU SER SEQRES 28 A 423 LYS ASN PRO ALA LYS ILE PHE ASN ILE ASN ASN LYS ILE SEQRES 29 A 423 GLU GLU GLY ASN LEU ALA ASN LEU THR ILE ILE ASP LEU SEQRES 30 A 423 LYS LYS GLU GLY LYS ILE ASN ALA GLU LEU PHE LYS SER SEQRES 31 A 423 LYS ALA LYS PHE SER PRO PHE ASP GLY TRP GLU VAL LYS SEQRES 32 A 423 GLY PHE PRO ILE TYR THR VAL ILE ASN GLY THR LEU TYR SEQRES 33 A 423 GLU ALA TYR GLY CYS LYS CYS MODRES 7UOF KCX A 137 LYS MODIFIED RESIDUE HET KCX A 137 12 HET ZN A 501 1 HET ZN A 502 1 HET ZN A 503 1 HET ZN A 504 1 HET ZN A 505 1 HET ZN A 506 1 HET ZN A 507 1 HET ZN A 508 1 HET ZN A 509 1 HET ZN A 510 1 HET ZN A 511 1 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM ZN ZINC ION FORMUL 1 KCX C7 H14 N2 O4 FORMUL 2 ZN 11(ZN 2+) FORMUL 13 HOH *219(H2 O) HELIX 1 AA1 ASP A 68 GLY A 79 1 12 HELIX 2 AA2 THR A 96 SER A 111 1 16 HELIX 3 AA3 ASP A 151 SER A 153 5 3 HELIX 4 AA4 LYS A 154 ASN A 160 1 7 HELIX 5 AA5 HIS A 171 TYR A 182 1 12 HELIX 6 AA6 SER A 186 ARG A 194 1 9 HELIX 7 AA7 ASP A 195 SER A 217 1 23 HELIX 8 AA8 THR A 230 GLN A 242 1 13 HELIX 9 AA9 THR A 254 LEU A 260 1 7 HELIX 10 AB1 ASN A 261 ASP A 263 5 3 HELIX 11 AB2 MET A 264 LYS A 269 1 6 HELIX 12 AB3 GLY A 270 LYS A 273 5 4 HELIX 13 AB4 GLU A 280 ASN A 293 1 14 HELIX 14 AB5 LEU A 307 LEU A 312 1 6 HELIX 15 AB6 THR A 327 LYS A 338 1 12 HELIX 16 AB7 SER A 342 SER A 351 1 10 HELIX 17 AB8 SER A 351 ASN A 359 1 9 HELIX 18 AB9 ASN A 384 PHE A 388 5 5 SHEET 1 AA1 4 ILE A 27 ALA A 31 0 SHEET 2 AA1 4 LYS A 13 ILE A 21 -1 N LEU A 20 O LYS A 28 SHEET 3 AA1 4 LEU A 2 LYS A 10 -1 N ILE A 8 O ILE A 15 SHEET 4 AA1 4 ILE A 40 ASP A 42 1 O ILE A 41 N LEU A 2 SHEET 1 AA2 7 ILE A 27 ALA A 31 0 SHEET 2 AA2 7 LYS A 13 ILE A 21 -1 N LEU A 20 O LYS A 28 SHEET 3 AA2 7 LEU A 2 LYS A 10 -1 N ILE A 8 O ILE A 15 SHEET 4 AA2 7 LEU A 47 PRO A 50 1 O VAL A 48 N ARG A 7 SHEET 5 AA2 7 LEU A 372 LYS A 382 -1 O THR A 373 N ILE A 49 SHEET 6 AA2 7 GLU A 401 ILE A 411 -1 O ILE A 407 N ILE A 374 SHEET 7 AA2 7 THR A 414 GLU A 417 -1 O THR A 414 N ILE A 411 SHEET 1 AA3 3 VAL A 52 VAL A 57 0 SHEET 2 AA3 3 VAL A 81 ASP A 86 1 O PHE A 83 N ASP A 54 SHEET 3 AA3 3 ASN A 114 LEU A 117 1 O PHE A 116 N ASP A 86 SHEET 1 AA4 6 PHE A 119 GLY A 120 0 SHEET 2 AA4 6 TYR A 136 PHE A 139 1 O KCX A 137 N PHE A 119 SHEET 3 AA4 6 LEU A 164 HIS A 168 1 O CYS A 166 N ILE A 138 SHEET 4 AA4 6 HIS A 222 PHE A 225 1 O HIS A 224 N PHE A 165 SHEET 5 AA4 6 LYS A 248 VAL A 253 1 O THR A 250 N PHE A 225 SHEET 6 AA4 6 ILE A 298 ILE A 299 1 O ILE A 298 N VAL A 253 LINK C TYR A 136 N KCX A 137 1555 1555 1.33 LINK C KCX A 137 N ILE A 138 1555 1555 1.32 LINK N MET A 1 ZN ZN A 507 1555 1555 1.97 LINK OE1 GLU A 23 ZN ZN A 507 1555 1555 2.30 LINK OE2 GLU A 23 ZN ZN A 507 1555 1555 2.24 LINK OD2 ASP A 37 ZN ZN A 510 1555 1555 2.06 LINK OE2 GLU A 39 ZN ZN A 505 1555 4556 1.87 LINK NE2 HIS A 56 ZN ZN A 501 1555 1555 2.03 LINK NE2 HIS A 58 ZN ZN A 501 1555 1555 2.05 LINK OD2 ASP A 68 ZN ZN A 505 1555 1555 2.02 LINK NZ LYS A 102 ZN ZN A 510 1555 4556 2.69 LINK OD2 ASP A 106 ZN ZN A 510 1555 4556 2.04 LINK OQ2 KCX A 137 ZN ZN A 501 1555 1555 2.18 LINK OQ1 KCX A 137 ZN ZN A 502 1555 1555 1.89 LINK OD1 ASP A 157 ZN ZN A 503 1555 6665 2.50 LINK OD2 ASP A 157 ZN ZN A 503 1555 6665 2.23 LINK ND1 HIS A 168 ZN ZN A 502 1555 1555 2.09 LINK OE1 GLU A 196 ZN ZN A 504 1555 1555 2.19 LINK OE2 GLU A 196 ZN ZN A 504 1555 1555 2.24 LINK NZ LYS A 211 ZN ZN A 506 1555 1555 1.96 LINK ND1 HIS A 222 ZN ZN A 511 1555 1555 2.08 LINK NE2 HIS A 227 ZN ZN A 502 1555 1555 2.07 LINK NZ LYS A 231 ZN ZN A 504 1555 1555 1.96 LINK OE2 GLU A 243 ZN ZN A 506 1555 1555 1.93 LINK OE1 GLU A 280 ZN ZN A 504 1555 1555 2.01 LINK OE2 GLU A 280 ZN ZN A 508 1555 2664 2.05 LINK OD2 ASP A 283 ZN ZN A 504 1555 1555 1.97 LINK OD1 ASP A 302 ZN ZN A 501 1555 1555 2.20 LINK OE2 GLU A 309 ZN ZN A 508 1555 1555 1.98 LINK OE1 GLU A 309 ZN ZN A 509 1555 1555 2.01 LINK OD1 ASP A 310 ZN ZN A 509 1555 1555 2.02 LINK NZ LYS A 313 ZN ZN A 508 1555 1555 2.24 LINK OE1 GLU A 380 ZN ZN A 503 1555 1555 2.60 LINK OE2 GLU A 380 ZN ZN A 503 1555 1555 1.97 LINK OE1 GLU A 386 ZN ZN A 506 1555 3565 1.93 LINK OE2 GLU A 386 ZN ZN A 506 1555 3565 2.66 LINK ZN ZN A 501 O HOH A 692 1555 1555 1.93 LINK ZN ZN A 502 O HOH A 692 1555 1555 2.13 LINK ZN ZN A 503 O HOH A 601 1555 1555 1.90 LINK ZN ZN A 503 O HOH A 605 1555 6655 1.75 LINK ZN ZN A 505 O HOH A 734 1555 4556 1.89 LINK ZN ZN A 505 O HOH A 802 1555 4556 2.17 LINK ZN ZN A 506 O HOH A 602 1555 1555 2.13 LINK ZN ZN A 506 O HOH A 623 1555 2664 2.11 LINK ZN ZN A 507 O HOH A 616 1555 1555 2.07 LINK ZN ZN A 507 O HOH A 631 1555 4556 2.22 LINK ZN ZN A 507 O HOH A 733 1555 1555 2.26 LINK ZN ZN A 508 O HOH A 798 1555 3565 2.15 LINK ZN ZN A 509 O HOH A 661 1555 1555 1.84 LINK ZN ZN A 509 O HOH A 668 1555 1555 2.33 LINK ZN ZN A 509 O HOH A 798 1555 3565 2.32 LINK ZN ZN A 510 O HOH A 606 1555 4556 2.28 LINK ZN ZN A 510 O HOH A 625 1555 4556 2.37 LINK ZN ZN A 511 O HOH A 615 1555 1555 2.42 LINK ZN ZN A 511 O HOH A 743 1555 1555 1.89 LINK ZN ZN A 511 O HOH A 785 1555 1555 2.15 LINK ZN ZN A 511 O HOH A 810 1555 1555 2.36 CISPEP 1 LYS A 91 PRO A 92 0 -0.44 CISPEP 2 ASN A 275 PRO A 276 0 -10.23 CRYST1 111.267 111.267 101.233 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008987 0.005189 0.000000 0.00000 SCALE2 0.000000 0.010378 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009878 0.00000