HEADER HYDROLASE/HYDROLASE INHIBITOR 14-APR-22 7UP1 TITLE NDM1-INHIBITOR CO-STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLO BETA-LACTAMASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: METALLO-BETA-LACTAMASE NDM-1,METALLO-BETA-LACTAMASE,NDM-1, COMPND 5 METALLOBETALACTAMASE NDM-1,NDM1 METALLO-BETA-LACTAMASE,NEW DELHI COMPND 6 METALLO CARBAPENEMASE-1,NEW DELHI METALLO BETA LACTAMASE 1,NEW DELHI COMPND 7 METALLO-BETA-LACTAMASE NDM-1,SUBCLASS B1 METALLO-BETA-LACTAMASE NDM- COMPND 8 1; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: BLANDM-1, BLA NDM-1, BLANDM1, NDM-1, D647_P47098, DDJ63_29735, SOURCE 5 EC13450_007, NCTC13443_00040, P2146_00143, PCRE380_21, SOURCE 6 PN11X00042NDM_090, PNDM-SX04_5, PNDM10469_138, SAMEA3499901_05193, SOURCE 7 TR3_031, TR4_031; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METALLO-BETA-LACTAMASE INHIBITOR, HYDROLASE, HYDROLASE-HYDROLASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.SCAPIN,T.O.FISCHMANN REVDAT 2 25-OCT-23 7UP1 1 REMARK REVDAT 1 08-MAR-23 7UP1 0 JRNL AUTH M.MANDAL,L.XIAO,W.PAN,G.SCAPIN,G.LI,H.TANG,S.W.YANG,J.PAN, JRNL AUTH 2 Y.ROOT,R.K.DE JESUS,C.YANG,W.PROSISE,P.DAYANANTH,A.MIRZA, JRNL AUTH 3 A.G.THERIEN,K.YOUNG,A.FLATTERY,C.GARLISI,R.ZHANG,D.CHU, JRNL AUTH 4 P.SHETH,I.CHU,J.WU,C.MARKGRAF,H.Y.KIM,R.PAINTER,T.W.MAYHOOD, JRNL AUTH 5 E.DINUNZIO,D.F.WYSS,A.V.BUEVICH,T.FISCHMANN,A.PASTERNAK, JRNL AUTH 6 S.DONG,J.D.HICKS,A.VILLAFANIA,L.LIANG,N.MURGOLO,T.BLACK, JRNL AUTH 7 W.K.HAGMANN,J.TATA,E.R.PARMEE,A.E.WEBER,J.SU,H.TANG JRNL TITL RAPID EVOLUTION OF A FRAGMENT-LIKE MOLECULE TO JRNL TITL 2 PAN-METALLO-BETA-LACTAMASE INHIBITORS: INITIAL LEADS TOWARD JRNL TITL 3 CLINICAL CANDIDATES. JRNL REF J.MED.CHEM. V. 65 16234 2022 JRNL REFN ISSN 0022-2623 JRNL PMID 36475645 JRNL DOI 10.1021/ACS.JMEDCHEM.2C00766 REMARK 2 REMARK 2 RESOLUTION. 1.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 16.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 163103 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.134 REMARK 3 R VALUE (WORKING SET) : 0.134 REMARK 3 FREE R VALUE : 0.144 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 8179 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.11 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.14 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.18 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 10675 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1544 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 10144 REMARK 3 BIN R VALUE (WORKING SET) : 0.1539 REMARK 3 BIN FREE R VALUE : 0.1643 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.97 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 531 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3594 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 51 REMARK 3 SOLVENT ATOMS : 680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 6.43 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.22980 REMARK 3 B22 (A**2) : 0.15730 REMARK 3 B33 (A**2) : -0.38700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.090 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.028 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.028 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.026 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.027 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3874 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5315 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1299 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 108 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 602 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3874 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 520 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5273 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.07 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 5.02 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 14.11 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 0.6539 -11.1059 -15.1529 REMARK 3 T TENSOR REMARK 3 T11: -0.0101 T22: -0.0117 REMARK 3 T33: -0.0185 T12: 0.0009 REMARK 3 T13: 0.0027 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.2794 L22: 0.3589 REMARK 3 L33: 0.2261 L12: -0.0218 REMARK 3 L13: 0.0350 L23: -0.0602 REMARK 3 S TENSOR REMARK 3 S11: 0.0018 S12: 0.0041 S13: -0.0153 REMARK 3 S21: -0.0231 S22: 0.0024 S23: -0.0099 REMARK 3 S31: 0.0215 S32: 0.0158 S33: -0.0041 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -10.4265 23.5079 -17.2251 REMARK 3 T TENSOR REMARK 3 T11: -0.0411 T22: -0.0450 REMARK 3 T33: -0.0497 T12: 0.0052 REMARK 3 T13: 0.0031 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.4262 L22: 0.3754 REMARK 3 L33: 0.3261 L12: 0.0624 REMARK 3 L13: -0.0136 L23: -0.0029 REMARK 3 S TENSOR REMARK 3 S11: -0.0069 S12: -0.0018 S13: 0.0439 REMARK 3 S21: -0.0092 S22: 0.0068 S23: 0.0200 REMARK 3 S31: -0.0425 S32: -0.0273 S33: 0.0001 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7UP1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-APR-22. REMARK 100 THE DEPOSITION ID IS D_1000264517. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 163291 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.110 REMARK 200 RESOLUTION RANGE LOW (A) : 134.175 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09400 REMARK 200 FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.11 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.60 REMARK 200 R MERGE FOR SHELL (I) : 0.56200 REMARK 200 R SYM FOR SHELL (I) : 0.56200 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: BUSTER REMARK 200 STARTING MODEL: 3ZR9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2, PH 8.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.51900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.08750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.53100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.08750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.51900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.53100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 23 REMARK 465 SER A 24 REMARK 465 LYS A 25 REMARK 465 LEU A 26 REMARK 465 GLU A 27 REMARK 465 PHE A 28 REMARK 465 GLY A 29 REMARK 465 GLY B 23 REMARK 465 SER B 24 REMARK 465 LYS B 25 REMARK 465 LEU B 26 REMARK 465 GLU B 27 REMARK 465 PHE B 28 REMARK 465 GLY B 29 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 70 -44.49 -139.34 REMARK 500 ASP A 90 144.31 73.81 REMARK 500 PHE B 70 -51.10 -131.14 REMARK 500 ASP B 90 143.08 74.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 759 DISTANCE = 5.89 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 120 NE2 REMARK 620 2 HIS A 122 ND1 97.9 REMARK 620 3 HIS A 189 NE2 101.6 111.5 REMARK 620 4 NZR A 304 S 149.6 85.0 105.5 REMARK 620 5 NZR A 304 N4 123.4 107.9 113.5 30.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 124 OD2 REMARK 620 2 CYS A 208 SG 106.5 REMARK 620 3 HIS A 250 NE2 84.4 106.6 REMARK 620 4 NZR A 304 N4 84.9 105.9 147.5 REMARK 620 5 NZR A 304 N 141.7 111.6 87.1 82.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 303 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 152 OE1 REMARK 620 2 GLU A 152 OE2 53.7 REMARK 620 3 ASP A 223 OD2 92.5 98.3 REMARK 620 4 GLU B 227 OE1 139.8 86.6 87.0 REMARK 620 5 GLU B 227 OE2 119.8 85.5 140.5 53.8 REMARK 620 6 HOH B 634 O 95.9 136.1 115.7 120.4 84.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 303 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 227 OE1 REMARK 620 2 GLU A 227 OE2 53.7 REMARK 620 3 HOH A 645 O 117.4 89.6 REMARK 620 4 GLU B 152 OE1 143.5 118.8 96.8 REMARK 620 5 GLU B 152 OE2 90.2 85.3 140.7 53.6 REMARK 620 6 ASP B 223 OD2 94.7 148.3 108.9 85.2 94.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 304 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 95 OD2 REMARK 620 2 ASP B 130 OD2 102.0 REMARK 620 3 HOH B 438 O 164.7 89.5 REMARK 620 4 HOH B 476 O 82.3 96.5 86.4 REMARK 620 5 HOH B 483 O 86.3 168.4 83.9 92.5 REMARK 620 6 HOH B 568 O 97.6 85.8 93.2 177.6 85.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 120 NE2 REMARK 620 2 HIS B 122 ND1 98.8 REMARK 620 3 HIS B 189 NE2 102.1 111.5 REMARK 620 4 NZR B 305 S 148.0 85.3 105.8 REMARK 620 5 NZR B 305 N4 121.2 109.9 112.5 31.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 124 OD2 REMARK 620 2 CYS B 208 SG 105.4 REMARK 620 3 HIS B 250 NE2 83.9 105.5 REMARK 620 4 NZR B 305 N 143.3 111.2 86.3 REMARK 620 5 NZR B 305 N4 86.4 107.2 147.3 83.0 REMARK 620 N 1 2 3 4 DBREF 7UP1 A 29 270 UNP E9NWK5 E9NWK5_KLEPN 29 270 DBREF 7UP1 B 29 270 UNP E9NWK5 E9NWK5_KLEPN 29 270 SEQADV 7UP1 GLY A 23 UNP E9NWK5 EXPRESSION TAG SEQADV 7UP1 SER A 24 UNP E9NWK5 EXPRESSION TAG SEQADV 7UP1 LYS A 25 UNP E9NWK5 EXPRESSION TAG SEQADV 7UP1 LEU A 26 UNP E9NWK5 EXPRESSION TAG SEQADV 7UP1 GLU A 27 UNP E9NWK5 EXPRESSION TAG SEQADV 7UP1 PHE A 28 UNP E9NWK5 EXPRESSION TAG SEQADV 7UP1 GLY B 23 UNP E9NWK5 EXPRESSION TAG SEQADV 7UP1 SER B 24 UNP E9NWK5 EXPRESSION TAG SEQADV 7UP1 LYS B 25 UNP E9NWK5 EXPRESSION TAG SEQADV 7UP1 LEU B 26 UNP E9NWK5 EXPRESSION TAG SEQADV 7UP1 GLU B 27 UNP E9NWK5 EXPRESSION TAG SEQADV 7UP1 PHE B 28 UNP E9NWK5 EXPRESSION TAG SEQRES 1 A 248 GLY SER LYS LEU GLU PHE GLY GLU ILE ARG PRO THR ILE SEQRES 2 A 248 GLY GLN GLN MET GLU THR GLY ASP GLN ARG PHE GLY ASP SEQRES 3 A 248 LEU VAL PHE ARG GLN LEU ALA PRO ASN VAL TRP GLN HIS SEQRES 4 A 248 THR SER TYR LEU ASP MET PRO GLY PHE GLY ALA VAL ALA SEQRES 5 A 248 SER ASN GLY LEU ILE VAL ARG ASP GLY GLY ARG VAL LEU SEQRES 6 A 248 VAL VAL ASP THR ALA TRP THR ASP ASP GLN THR ALA GLN SEQRES 7 A 248 ILE LEU ASN TRP ILE LYS GLN GLU ILE ASN LEU PRO VAL SEQRES 8 A 248 ALA LEU ALA VAL VAL THR HIS ALA HIS GLN ASP LYS MET SEQRES 9 A 248 GLY GLY MET ASP ALA LEU HIS ALA ALA GLY ILE ALA THR SEQRES 10 A 248 TYR ALA ASN ALA LEU SER ASN GLN LEU ALA PRO GLN GLU SEQRES 11 A 248 GLY MET VAL ALA ALA GLN HIS SER LEU THR PHE ALA ALA SEQRES 12 A 248 ASN GLY TRP VAL GLU PRO ALA THR ALA PRO ASN PHE GLY SEQRES 13 A 248 PRO LEU LYS VAL PHE TYR PRO GLY PRO GLY HIS THR SER SEQRES 14 A 248 ASP ASN ILE THR VAL GLY ILE ASP GLY THR ASP ILE ALA SEQRES 15 A 248 PHE GLY GLY CYS LEU ILE LYS ASP SER LYS ALA LYS SER SEQRES 16 A 248 LEU GLY ASN LEU GLY ASP ALA ASP THR GLU HIS TYR ALA SEQRES 17 A 248 ALA SER ALA ARG ALA PHE GLY ALA ALA PHE PRO LYS ALA SEQRES 18 A 248 SER MET ILE VAL MET SER HIS SER ALA PRO ASP SER ARG SEQRES 19 A 248 ALA ALA ILE THR HIS THR ALA ARG MET ALA ASP LYS LEU SEQRES 20 A 248 ARG SEQRES 1 B 248 GLY SER LYS LEU GLU PHE GLY GLU ILE ARG PRO THR ILE SEQRES 2 B 248 GLY GLN GLN MET GLU THR GLY ASP GLN ARG PHE GLY ASP SEQRES 3 B 248 LEU VAL PHE ARG GLN LEU ALA PRO ASN VAL TRP GLN HIS SEQRES 4 B 248 THR SER TYR LEU ASP MET PRO GLY PHE GLY ALA VAL ALA SEQRES 5 B 248 SER ASN GLY LEU ILE VAL ARG ASP GLY GLY ARG VAL LEU SEQRES 6 B 248 VAL VAL ASP THR ALA TRP THR ASP ASP GLN THR ALA GLN SEQRES 7 B 248 ILE LEU ASN TRP ILE LYS GLN GLU ILE ASN LEU PRO VAL SEQRES 8 B 248 ALA LEU ALA VAL VAL THR HIS ALA HIS GLN ASP LYS MET SEQRES 9 B 248 GLY GLY MET ASP ALA LEU HIS ALA ALA GLY ILE ALA THR SEQRES 10 B 248 TYR ALA ASN ALA LEU SER ASN GLN LEU ALA PRO GLN GLU SEQRES 11 B 248 GLY MET VAL ALA ALA GLN HIS SER LEU THR PHE ALA ALA SEQRES 12 B 248 ASN GLY TRP VAL GLU PRO ALA THR ALA PRO ASN PHE GLY SEQRES 13 B 248 PRO LEU LYS VAL PHE TYR PRO GLY PRO GLY HIS THR SER SEQRES 14 B 248 ASP ASN ILE THR VAL GLY ILE ASP GLY THR ASP ILE ALA SEQRES 15 B 248 PHE GLY GLY CYS LEU ILE LYS ASP SER LYS ALA LYS SER SEQRES 16 B 248 LEU GLY ASN LEU GLY ASP ALA ASP THR GLU HIS TYR ALA SEQRES 17 B 248 ALA SER ALA ARG ALA PHE GLY ALA ALA PHE PRO LYS ALA SEQRES 18 B 248 SER MET ILE VAL MET SER HIS SER ALA PRO ASP SER ARG SEQRES 19 B 248 ALA ALA ILE THR HIS THR ALA ARG MET ALA ASP LYS LEU SEQRES 20 B 248 ARG HET ZN A 301 1 HET ZN A 302 1 HET CD A 303 1 HET NZR A 304 22 HET ZN B 301 1 HET ZN B 302 1 HET CD B 303 1 HET CD B 304 1 HET NZR B 305 22 HETNAM ZN ZINC ION HETNAM CD CADMIUM ION HETNAM NZR (2M)-4'-METHYL-2-(2H-TETRAZOL-5-YL)[1,1'-BIPHENYL]-3- HETNAM 2 NZR SULFONAMIDE FORMUL 3 ZN 4(ZN 2+) FORMUL 5 CD 3(CD 2+) FORMUL 6 NZR 2(C14 H13 N5 O2 S) FORMUL 12 HOH *680(H2 O) HELIX 1 AA1 THR A 94 ILE A 109 1 16 HELIX 2 AA2 HIS A 122 GLY A 127 1 6 HELIX 3 AA3 GLY A 128 ALA A 135 1 8 HELIX 4 AA4 ALA A 143 ALA A 149 1 7 HELIX 5 AA5 GLU A 170 ALA A 174 5 5 HELIX 6 AA6 HIS A 228 PHE A 240 1 13 HELIX 7 AA7 ARG A 256 LYS A 268 1 13 HELIX 8 AA8 THR B 94 ILE B 109 1 16 HELIX 9 AA9 HIS B 122 GLY B 127 1 6 HELIX 10 AB1 GLY B 128 ALA B 135 1 8 HELIX 11 AB2 ALA B 143 ALA B 149 1 7 HELIX 12 AB3 PRO B 150 GLY B 153 5 4 HELIX 13 AB4 GLU B 170 ALA B 174 5 5 HELIX 14 AB5 HIS B 228 PHE B 240 1 13 HELIX 15 AB6 ARG B 256 LYS B 268 1 13 SHEET 1 AA1 8 ASP A 43 PHE A 46 0 SHEET 2 AA1 8 LEU A 49 ALA A 55 -1 O PHE A 51 N GLN A 44 SHEET 3 AA1 8 VAL A 58 MET A 67 -1 O GLN A 60 N ARG A 52 SHEET 4 AA1 8 GLY A 71 ASP A 82 -1 O GLY A 71 N MET A 67 SHEET 5 AA1 8 ARG A 85 VAL A 89 -1 O ARG A 85 N ASP A 82 SHEET 6 AA1 8 VAL A 113 VAL A 117 1 O ALA A 114 N VAL A 86 SHEET 7 AA1 8 ALA A 138 ASN A 142 1 O TYR A 140 N ALA A 116 SHEET 8 AA1 8 HIS A 159 LEU A 161 1 O LEU A 161 N ALA A 141 SHEET 1 AA2 4 LEU A 180 PHE A 183 0 SHEET 2 AA2 4 THR A 195 ILE A 198 -1 O GLY A 197 N LYS A 181 SHEET 3 AA2 4 ILE A 203 GLY A 207 -1 O PHE A 205 N VAL A 196 SHEET 4 AA2 4 MET A 245 MET A 248 1 O VAL A 247 N GLY A 206 SHEET 1 AA3 8 GLN B 44 PHE B 46 0 SHEET 2 AA3 8 LEU B 49 ALA B 55 -1 O PHE B 51 N GLN B 44 SHEET 3 AA3 8 VAL B 58 MET B 67 -1 O GLN B 60 N ARG B 52 SHEET 4 AA3 8 GLY B 71 ASP B 82 -1 O GLY B 71 N MET B 67 SHEET 5 AA3 8 ARG B 85 VAL B 89 -1 O LEU B 87 N VAL B 80 SHEET 6 AA3 8 VAL B 113 VAL B 117 1 O VAL B 117 N VAL B 88 SHEET 7 AA3 8 ALA B 138 ASN B 142 1 O TYR B 140 N ALA B 116 SHEET 8 AA3 8 HIS B 159 LEU B 161 1 O LEU B 161 N ALA B 141 SHEET 1 AA4 4 LEU B 180 PHE B 183 0 SHEET 2 AA4 4 THR B 195 ILE B 198 -1 O GLY B 197 N LYS B 181 SHEET 3 AA4 4 ILE B 203 PHE B 205 -1 O PHE B 205 N VAL B 196 SHEET 4 AA4 4 MET B 245 VAL B 247 1 O VAL B 247 N ALA B 204 LINK NE2 HIS A 120 ZN ZN A 301 1555 1555 2.03 LINK ND1 HIS A 122 ZN ZN A 301 1555 1555 2.03 LINK OD2 ASP A 124 ZN ZN A 302 1555 1555 2.10 LINK OE1 GLU A 152 CD CD A 303 1555 1555 2.45 LINK OE2 GLU A 152 CD CD A 303 1555 1555 2.35 LINK NE2 HIS A 189 ZN ZN A 301 1555 1555 2.01 LINK SG CYS A 208 ZN ZN A 302 1555 1555 2.38 LINK OD2 ASP A 223 CD CD A 303 1555 1555 2.22 LINK OE1 GLU A 227 CD CD B 303 1555 1555 2.40 LINK OE2 GLU A 227 CD CD B 303 1555 1555 2.43 LINK NE2 HIS A 250 ZN ZN A 302 1555 1555 2.20 LINK ZN ZN A 301 S NZR A 304 1555 1555 2.92 LINK ZN ZN A 301 N4 NZR A 304 1555 1555 2.04 LINK ZN ZN A 302 N4 NZR A 304 1555 1555 2.49 LINK ZN ZN A 302 N NZR A 304 1555 1555 2.15 LINK CD CD A 303 OE1 GLU B 227 1555 1555 2.48 LINK CD CD A 303 OE2 GLU B 227 1555 1555 2.35 LINK CD CD A 303 O HOH B 634 1555 1555 2.26 LINK O HOH A 645 CD CD B 303 1555 1555 2.48 LINK OD2 ASP B 95 CD CD B 304 1555 1555 2.24 LINK NE2 HIS B 120 ZN ZN B 301 1555 1555 2.04 LINK ND1 HIS B 122 ZN ZN B 301 1555 1555 2.05 LINK OD2 ASP B 124 ZN ZN B 302 1555 1555 2.12 LINK OD2 ASP B 130 CD CD B 304 1555 1555 2.30 LINK OE1 GLU B 152 CD CD B 303 1555 1555 2.47 LINK OE2 GLU B 152 CD CD B 303 1555 1555 2.33 LINK NE2 HIS B 189 ZN ZN B 301 1555 1555 2.00 LINK SG CYS B 208 ZN ZN B 302 1555 1555 2.38 LINK OD2 ASP B 223 CD CD B 303 1555 1555 2.24 LINK NE2 HIS B 250 ZN ZN B 302 1555 1555 2.20 LINK ZN ZN B 301 S NZR B 305 1555 1555 2.93 LINK ZN ZN B 301 N4 NZR B 305 1555 1555 2.02 LINK ZN ZN B 302 N NZR B 305 1555 1555 2.19 LINK ZN ZN B 302 N4 NZR B 305 1555 1555 2.43 LINK CD CD B 304 O HOH B 438 1555 1655 2.32 LINK CD CD B 304 O HOH B 476 1555 1655 2.31 LINK CD CD B 304 O HOH B 483 1555 1555 2.36 LINK CD CD B 304 O HOH B 568 1555 1555 2.37 CRYST1 39.038 79.062 134.175 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025616 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012648 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007453 0.00000