HEADER HYDROLASE/RNA 28-APR-22 7UU5 TITLE CRYSTAL STRUCTURE OF APOBEC3G COMPLEX WITH 5'-OVERHANG DSRNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA DC->DU-EDITING ENZYME APOBEC-3G; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DEOXYCYTIDINE DEAMINASE; COMPND 5 EC: 3.5.4.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA (5'-R(P*UP*AP*AP*CP*GP*CP*UP*GP*CP*GP*G)-3'); COMPND 9 CHAIN: M; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: RNA (5'-R(P*UP*AP*AP*CP*CP*GP*CP*AP*GP*CP*G)-3'); COMPND 13 CHAIN: N; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MACACA MULATTA; SOURCE 3 ORGANISM_COMMON: RHESUS MONKEY; SOURCE 4 ORGANISM_TAXID: 9544; SOURCE 5 GENE: APOBEC3G; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630 KEYWDS DEAMINASE, APOBEC, HYDROLASE, HYDROLASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.YANG,S.LI,X.S.CHEN REVDAT 3 25-OCT-23 7UU5 1 REMARK REVDAT 2 16-AUG-23 7UU5 1 AUTHOR REVDAT 1 11-JAN-23 7UU5 0 JRNL AUTH H.YANG,K.KIM,S.LI,J.PACHECO,X.S.CHEN JRNL TITL STRUCTURAL BASIS OF SEQUENCE-SPECIFIC RNA RECOGNITION BY THE JRNL TITL 2 ANTIVIRAL FACTOR APOBEC3G. JRNL REF NAT COMMUN V. 13 7498 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 36470880 JRNL DOI 10.1038/S41467-022-35201-9 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 21341 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.260 REMARK 3 FREE R VALUE TEST SET COUNT : 1335 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.5080 - 6.2433 0.99 2024 131 0.1707 0.2022 REMARK 3 2 6.2433 - 4.9573 0.99 2059 125 0.1852 0.2142 REMARK 3 3 4.9573 - 4.3312 0.99 2008 136 0.1538 0.2283 REMARK 3 4 4.3312 - 3.9354 0.99 2030 126 0.1694 0.2325 REMARK 3 5 3.9354 - 3.6535 0.99 1981 146 0.1803 0.2339 REMARK 3 6 3.6535 - 3.4382 0.99 2032 132 0.1945 0.2559 REMARK 3 7 3.4382 - 3.2660 0.99 2013 142 0.2175 0.3296 REMARK 3 8 3.2660 - 3.1239 0.99 2009 126 0.2310 0.2855 REMARK 3 9 3.1239 - 3.0036 0.98 2007 132 0.2574 0.3187 REMARK 3 10 3.0036 - 2.9000 0.92 1843 139 0.2965 0.3947 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 86.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): -42.1000 6.0108 24.8174 REMARK 3 T TENSOR REMARK 3 T11: 0.4386 T22: 0.4335 REMARK 3 T33: 0.3709 T12: -0.0318 REMARK 3 T13: -0.0748 T23: -0.0246 REMARK 3 L TENSOR REMARK 3 L11: 4.5612 L22: 2.8500 REMARK 3 L33: 2.2878 L12: -0.8205 REMARK 3 L13: -1.4536 L23: 0.8635 REMARK 3 S TENSOR REMARK 3 S11: 0.0974 S12: 0.1046 S13: 0.2114 REMARK 3 S21: -0.0850 S22: -0.2068 S23: 0.3538 REMARK 3 S31: -0.2566 S32: -0.3345 S33: 0.0992 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 142 THROUGH 383 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.3212 -8.2680 25.1593 REMARK 3 T TENSOR REMARK 3 T11: 0.5178 T22: 0.4476 REMARK 3 T33: 0.5556 T12: -0.0066 REMARK 3 T13: 0.0149 T23: 0.0215 REMARK 3 L TENSOR REMARK 3 L11: 4.0274 L22: 1.4553 REMARK 3 L33: 1.2472 L12: -1.2030 REMARK 3 L13: 0.6380 L23: 0.0813 REMARK 3 S TENSOR REMARK 3 S11: 0.1888 S12: 0.2046 S13: -0.1232 REMARK 3 S21: -0.0555 S22: -0.0367 S23: -0.2612 REMARK 3 S31: 0.1654 S32: -0.0386 S33: -0.1697 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.0674 4.5335 -19.8691 REMARK 3 T TENSOR REMARK 3 T11: 0.4374 T22: 0.4870 REMARK 3 T33: 0.3610 T12: 0.0220 REMARK 3 T13: -0.0458 T23: -0.0674 REMARK 3 L TENSOR REMARK 3 L11: 3.9329 L22: 3.0246 REMARK 3 L33: 2.3097 L12: 0.2281 REMARK 3 L13: -1.4234 L23: -0.6191 REMARK 3 S TENSOR REMARK 3 S11: 0.1835 S12: 0.0896 S13: 0.1912 REMARK 3 S21: -0.0541 S22: -0.1637 S23: -0.3700 REMARK 3 S31: -0.2428 S32: 0.1645 S33: -0.0319 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 165 THROUGH 383 ) REMARK 3 ORIGIN FOR THE GROUP (A): -46.7534 -8.4703 -20.5650 REMARK 3 T TENSOR REMARK 3 T11: 0.4892 T22: 0.4257 REMARK 3 T33: 0.5616 T12: 0.0077 REMARK 3 T13: 0.0021 T23: -0.0808 REMARK 3 L TENSOR REMARK 3 L11: 4.1278 L22: 1.3887 REMARK 3 L33: 1.1015 L12: 0.7654 REMARK 3 L13: 0.9221 L23: -0.1840 REMARK 3 S TENSOR REMARK 3 S11: 0.0845 S12: -0.1617 S13: -0.1124 REMARK 3 S21: 0.1116 S22: -0.0391 S23: 0.3806 REMARK 3 S31: 0.1659 S32: -0.0269 S33: -0.0659 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'M' AND (RESID 2 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.3198 17.2511 1.7125 REMARK 3 T TENSOR REMARK 3 T11: 1.7682 T22: 1.2432 REMARK 3 T33: 1.0893 T12: 0.0602 REMARK 3 T13: 0.4159 T23: 0.3091 REMARK 3 L TENSOR REMARK 3 L11: 5.5530 L22: 5.8904 REMARK 3 L33: 3.0064 L12: -1.9490 REMARK 3 L13: -0.4757 L23: -1.4744 REMARK 3 S TENSOR REMARK 3 S11: 0.3795 S12: 0.2129 S13: 1.8982 REMARK 3 S21: -1.3144 S22: 0.6976 S23: -0.7272 REMARK 3 S31: -2.0308 S32: -0.4415 S33: -1.0635 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'N' AND (RESID 2 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.5201 17.2580 3.0656 REMARK 3 T TENSOR REMARK 3 T11: 1.5610 T22: 1.3345 REMARK 3 T33: 1.1158 T12: -0.0887 REMARK 3 T13: 0.3716 T23: -0.2254 REMARK 3 L TENSOR REMARK 3 L11: 6.0445 L22: 7.8437 REMARK 3 L33: 3.2074 L12: 1.0723 REMARK 3 L13: 0.0560 L23: 3.7489 REMARK 3 S TENSOR REMARK 3 S11: 0.3704 S12: -0.3691 S13: 1.9855 REMARK 3 S21: 1.3280 S22: 0.4868 S23: 0.5995 REMARK 3 S31: -1.3922 S32: 0.6681 S33: -0.9203 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 3 THROUGH 14 OR RESID REMARK 3 16 THROUGH 58 OR RESID 60 THROUGH 98 OR REMARK 3 RESID 100 THROUGH 172 OR RESID 174 REMARK 3 THROUGH 215 OR RESID 217 THROUGH 242 OR REMARK 3 RESID 244 THROUGH 253 OR RESID 255 REMARK 3 THROUGH 318 OR RESID 320 THROUGH 354 OR REMARK 3 RESID 356 THROUGH 383 OR RESID 800 REMARK 3 THROUGH 900)) REMARK 3 SELECTION : (CHAIN B AND (RESID 3 THROUGH 14 OR RESID REMARK 3 16 THROUGH 58 OR RESID 60 THROUGH 98 OR REMARK 3 RESID 100 THROUGH 172 OR RESID 174 REMARK 3 THROUGH 215 OR RESID 217 THROUGH 242 OR REMARK 3 RESID 244 THROUGH 253 OR RESID 255 REMARK 3 THROUGH 318 OR RESID 320 THROUGH 354 OR REMARK 3 RESID 356 THROUGH 383 OR RESID 800 REMARK 3 THROUGH 900)) REMARK 3 ATOM PAIRS NUMBER : 3441 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7UU5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-APR-22. REMARK 100 THE DEPOSITION ID IS D_1000264822. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03322 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21497 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6P3X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M NA/K PHOSPHATE, PH 6.9, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, M, N REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -6 REMARK 465 PRO A -5 REMARK 465 GLY A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 GLY A -1 REMARK 465 GLY A 0 REMARK 465 GLY B -6 REMARK 465 PRO B -5 REMARK 465 GLY B -4 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 GLY B -1 REMARK 465 GLY B 0 REMARK 465 U M 1 REMARK 465 C M 13 REMARK 465 C M 14 REMARK 465 U M 15 REMARK 465 U M 16 REMARK 465 U M 17 REMARK 465 U M 18 REMARK 465 U N 1 REMARK 465 C N 13 REMARK 465 C N 14 REMARK 465 U N 15 REMARK 465 U N 16 REMARK 465 U N 17 REMARK 465 U N 18 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 7 72.91 89.86 REMARK 500 PRO A 60 168.37 -49.04 REMARK 500 LYS A 61 65.01 73.91 REMARK 500 TRP A 211 -31.71 -139.04 REMARK 500 VAL A 212 97.63 -49.70 REMARK 500 ASN B 7 69.53 91.21 REMARK 500 LYS B 42 37.70 129.39 REMARK 500 ASP B 43 112.63 -161.76 REMARK 500 PRO B 60 173.92 -45.51 REMARK 500 LYS B 61 58.69 72.08 REMARK 500 TRP B 211 -31.76 -138.34 REMARK 500 VAL B 212 93.79 -45.26 REMARK 500 ASN B 229 66.00 60.11 REMARK 500 CYS B 287 -178.77 -68.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 319 0.22 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 65 ND1 REMARK 620 2 CYS A 97 SG 135.7 REMARK 620 3 CYS A 100 SG 94.1 103.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 287 SG REMARK 620 2 CYS A 290 SG 91.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 65 ND1 REMARK 620 2 GLU B 67 OE1 140.1 REMARK 620 3 CYS B 97 SG 93.0 124.3 REMARK 620 4 CYS B 100 SG 87.5 83.2 84.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 257 ND1 REMARK 620 2 CYS B 287 SG 118.9 REMARK 620 3 CYS B 290 SG 104.6 134.7 REMARK 620 N 1 2 DBREF 7UU5 A 1 383 UNP M1GSK9 M1GSK9_MACMU 1 383 DBREF 7UU5 B 1 383 UNP M1GSK9 M1GSK9_MACMU 1 383 DBREF 7UU5 M 1 18 PDB 7UU5 7UU5 1 18 DBREF 7UU5 N 1 18 PDB 7UU5 7UU5 1 18 SEQADV 7UU5 GLY A -6 UNP M1GSK9 EXPRESSION TAG SEQADV 7UU5 PRO A -5 UNP M1GSK9 EXPRESSION TAG SEQADV 7UU5 GLY A -4 UNP M1GSK9 EXPRESSION TAG SEQADV 7UU5 GLY A -3 UNP M1GSK9 EXPRESSION TAG SEQADV 7UU5 SER A -2 UNP M1GSK9 EXPRESSION TAG SEQADV 7UU5 GLY A -1 UNP M1GSK9 EXPRESSION TAG SEQADV 7UU5 GLY A 0 UNP M1GSK9 EXPRESSION TAG SEQADV 7UU5 ASP A 128 UNP M1GSK9 LYS 128 CONFLICT SEQADV 7UU5 ALA A 139 UNP M1GSK9 CYS 139 CONFLICT SEQADV 7UU5 GLU A 140 UNP M1GSK9 GLN 140 CONFLICT SEQADV 7UU5 ALA A 141 UNP M1GSK9 LYS 141 CONFLICT SEQADV 7UU5 GLY A 142 UNP M1GSK9 ARG 142 CONFLICT SEQADV 7UU5 A UNP M1GSK9 ASP 143 DELETION SEQADV 7UU5 A UNP M1GSK9 GLY 144 DELETION SEQADV 7UU5 A UNP M1GSK9 PRO 145 DELETION SEQADV 7UU5 A UNP M1GSK9 HIS 146 DELETION SEQADV 7UU5 ALA A 259 UNP M1GSK9 GLU 259 CONFLICT SEQADV 7UU5 GLY B -6 UNP M1GSK9 EXPRESSION TAG SEQADV 7UU5 PRO B -5 UNP M1GSK9 EXPRESSION TAG SEQADV 7UU5 GLY B -4 UNP M1GSK9 EXPRESSION TAG SEQADV 7UU5 GLY B -3 UNP M1GSK9 EXPRESSION TAG SEQADV 7UU5 SER B -2 UNP M1GSK9 EXPRESSION TAG SEQADV 7UU5 GLY B -1 UNP M1GSK9 EXPRESSION TAG SEQADV 7UU5 GLY B 0 UNP M1GSK9 EXPRESSION TAG SEQADV 7UU5 ASP B 128 UNP M1GSK9 LYS 128 CONFLICT SEQADV 7UU5 ALA B 139 UNP M1GSK9 CYS 139 CONFLICT SEQADV 7UU5 GLU B 140 UNP M1GSK9 GLN 140 CONFLICT SEQADV 7UU5 ALA B 141 UNP M1GSK9 LYS 141 CONFLICT SEQADV 7UU5 GLY B 142 UNP M1GSK9 ARG 142 CONFLICT SEQADV 7UU5 B UNP M1GSK9 ASP 143 DELETION SEQADV 7UU5 B UNP M1GSK9 GLY 144 DELETION SEQADV 7UU5 B UNP M1GSK9 PRO 145 DELETION SEQADV 7UU5 B UNP M1GSK9 HIS 146 DELETION SEQADV 7UU5 ALA B 259 UNP M1GSK9 GLU 259 CONFLICT SEQRES 1 A 386 GLY PRO GLY GLY SER GLY GLY MET LYS PRO GLN ILE ARG SEQRES 2 A 386 ASN MET VAL GLU PRO MET ASP PRO ARG THR PHE VAL SER SEQRES 3 A 386 ASN PHE ASN ASN ARG PRO ILE LEU SER GLY LEU ASP THR SEQRES 4 A 386 VAL TRP LEU CYS CYS GLU VAL LYS THR LYS ASP PRO SER SEQRES 5 A 386 GLY PRO PRO LEU ASP ALA LYS ILE PHE GLN GLY LYS VAL SEQRES 6 A 386 TYR PRO LYS ALA LYS TYR HIS PRO GLU MET ARG PHE LEU SEQRES 7 A 386 ARG TRP PHE HIS LYS TRP ARG GLN LEU HIS HIS ASP GLN SEQRES 8 A 386 GLU TYR LYS VAL THR TRP TYR VAL SER TRP SER PRO CYS SEQRES 9 A 386 THR ARG CYS ALA ASN SER VAL ALA THR PHE LEU ALA LYS SEQRES 10 A 386 ASP PRO LYS VAL THR LEU THR ILE PHE VAL ALA ARG LEU SEQRES 11 A 386 TYR TYR PHE TRP ASP PRO ASP TYR GLN GLN ALA LEU ARG SEQRES 12 A 386 ILE LEU ALA GLU ALA GLY ALA THR MET LYS ILE MET ASN SEQRES 13 A 386 TYR ASN GLU PHE GLN ASP CYS TRP ASN LYS PHE VAL ASP SEQRES 14 A 386 GLY ARG GLY LYS PRO PHE LYS PRO TRP ASN ASN LEU PRO SEQRES 15 A 386 LYS HIS TYR THR LEU LEU GLN ALA THR LEU GLY GLU LEU SEQRES 16 A 386 LEU ARG HIS LEU MET ASP PRO GLY THR PHE THR SER ASN SEQRES 17 A 386 PHE ASN ASN LYS PRO TRP VAL SER GLY GLN HIS GLU THR SEQRES 18 A 386 TYR LEU CYS TYR LYS VAL GLU ARG LEU HIS ASN ASP THR SEQRES 19 A 386 TRP VAL PRO LEU ASN GLN HIS ARG GLY PHE LEU ARG ASN SEQRES 20 A 386 GLN ALA PRO ASN ILE HIS GLY PHE PRO LYS GLY ARG HIS SEQRES 21 A 386 ALA ALA LEU CYS PHE LEU ASP LEU ILE PRO PHE TRP LYS SEQRES 22 A 386 LEU ASP GLY GLN GLN TYR ARG VAL THR CYS PHE THR SER SEQRES 23 A 386 TRP SER PRO CYS PHE SER CYS ALA GLN GLU MET ALA LYS SEQRES 24 A 386 PHE ILE SER ASN ASN GLU HIS VAL SER LEU CYS ILE PHE SEQRES 25 A 386 ALA ALA ARG ILE TYR ASP ASP GLN GLY ARG TYR GLN GLU SEQRES 26 A 386 GLY LEU ARG THR LEU HIS ARG ASP GLY ALA LYS ILE ALA SEQRES 27 A 386 MET MET ASN TYR SER GLU PHE GLU TYR CYS TRP ASP THR SEQRES 28 A 386 PHE VAL ASP ARG GLN GLY ARG PRO PHE GLN PRO TRP ASP SEQRES 29 A 386 GLY LEU ASP GLU HIS SER GLN ALA LEU SER GLY ARG LEU SEQRES 30 A 386 ARG ALA ILE LEU GLN ASN GLN GLY ASN SEQRES 1 B 386 GLY PRO GLY GLY SER GLY GLY MET LYS PRO GLN ILE ARG SEQRES 2 B 386 ASN MET VAL GLU PRO MET ASP PRO ARG THR PHE VAL SER SEQRES 3 B 386 ASN PHE ASN ASN ARG PRO ILE LEU SER GLY LEU ASP THR SEQRES 4 B 386 VAL TRP LEU CYS CYS GLU VAL LYS THR LYS ASP PRO SER SEQRES 5 B 386 GLY PRO PRO LEU ASP ALA LYS ILE PHE GLN GLY LYS VAL SEQRES 6 B 386 TYR PRO LYS ALA LYS TYR HIS PRO GLU MET ARG PHE LEU SEQRES 7 B 386 ARG TRP PHE HIS LYS TRP ARG GLN LEU HIS HIS ASP GLN SEQRES 8 B 386 GLU TYR LYS VAL THR TRP TYR VAL SER TRP SER PRO CYS SEQRES 9 B 386 THR ARG CYS ALA ASN SER VAL ALA THR PHE LEU ALA LYS SEQRES 10 B 386 ASP PRO LYS VAL THR LEU THR ILE PHE VAL ALA ARG LEU SEQRES 11 B 386 TYR TYR PHE TRP ASP PRO ASP TYR GLN GLN ALA LEU ARG SEQRES 12 B 386 ILE LEU ALA GLU ALA GLY ALA THR MET LYS ILE MET ASN SEQRES 13 B 386 TYR ASN GLU PHE GLN ASP CYS TRP ASN LYS PHE VAL ASP SEQRES 14 B 386 GLY ARG GLY LYS PRO PHE LYS PRO TRP ASN ASN LEU PRO SEQRES 15 B 386 LYS HIS TYR THR LEU LEU GLN ALA THR LEU GLY GLU LEU SEQRES 16 B 386 LEU ARG HIS LEU MET ASP PRO GLY THR PHE THR SER ASN SEQRES 17 B 386 PHE ASN ASN LYS PRO TRP VAL SER GLY GLN HIS GLU THR SEQRES 18 B 386 TYR LEU CYS TYR LYS VAL GLU ARG LEU HIS ASN ASP THR SEQRES 19 B 386 TRP VAL PRO LEU ASN GLN HIS ARG GLY PHE LEU ARG ASN SEQRES 20 B 386 GLN ALA PRO ASN ILE HIS GLY PHE PRO LYS GLY ARG HIS SEQRES 21 B 386 ALA ALA LEU CYS PHE LEU ASP LEU ILE PRO PHE TRP LYS SEQRES 22 B 386 LEU ASP GLY GLN GLN TYR ARG VAL THR CYS PHE THR SER SEQRES 23 B 386 TRP SER PRO CYS PHE SER CYS ALA GLN GLU MET ALA LYS SEQRES 24 B 386 PHE ILE SER ASN ASN GLU HIS VAL SER LEU CYS ILE PHE SEQRES 25 B 386 ALA ALA ARG ILE TYR ASP ASP GLN GLY ARG TYR GLN GLU SEQRES 26 B 386 GLY LEU ARG THR LEU HIS ARG ASP GLY ALA LYS ILE ALA SEQRES 27 B 386 MET MET ASN TYR SER GLU PHE GLU TYR CYS TRP ASP THR SEQRES 28 B 386 PHE VAL ASP ARG GLN GLY ARG PRO PHE GLN PRO TRP ASP SEQRES 29 B 386 GLY LEU ASP GLU HIS SER GLN ALA LEU SER GLY ARG LEU SEQRES 30 B 386 ARG ALA ILE LEU GLN ASN GLN GLY ASN SEQRES 1 M 18 U U A A C G C U G C G G C SEQRES 2 M 18 C U U U U SEQRES 1 N 18 U U A A C C G C A G C G C SEQRES 2 N 18 C U U U U HET ZN A 401 1 HET ZN A 402 1 HET ZN B 401 1 HET ZN B 402 1 HETNAM ZN ZINC ION FORMUL 5 ZN 4(ZN 2+) HELIX 1 AA1 ASP A 13 ASN A 22 1 10 HELIX 2 AA2 LYS A 61 TYR A 64 5 4 HELIX 3 AA3 HIS A 65 HIS A 81 1 17 HELIX 4 AA4 CYS A 97 ASP A 111 1 15 HELIX 5 AA5 ASP A 128 GLY A 142 1 15 HELIX 6 AA6 ASN A 153 VAL A 165 1 13 HELIX 7 AA7 ASN A 177 LEU A 193 1 17 HELIX 8 AA8 ASP A 198 ASN A 207 1 10 HELIX 9 AA9 HIS A 257 TRP A 269 1 13 HELIX 10 AB1 CYS A 287 ASN A 301 1 15 HELIX 11 AB2 ARG A 319 GLY A 331 1 13 HELIX 12 AB3 ASN A 338 VAL A 350 1 13 HELIX 13 AB4 GLY A 362 GLN A 379 1 18 HELIX 14 AB5 ASP B 13 ASN B 22 1 10 HELIX 15 AB6 LYS B 61 TYR B 64 5 4 HELIX 16 AB7 HIS B 65 HIS B 81 1 17 HELIX 17 AB8 CYS B 97 ASP B 111 1 15 HELIX 18 AB9 ASP B 128 GLY B 142 1 15 HELIX 19 AC1 ASN B 153 VAL B 165 1 13 HELIX 20 AC2 ASN B 177 LEU B 193 1 17 HELIX 21 AC3 ASP B 198 ASN B 207 1 10 HELIX 22 AC4 HIS B 257 TRP B 269 1 13 HELIX 23 AC5 CYS B 287 ASN B 301 1 15 HELIX 24 AC6 ARG B 319 GLY B 331 1 13 HELIX 25 AC7 ASN B 338 VAL B 350 1 13 HELIX 26 AC8 GLY B 362 GLN B 379 1 18 SHEET 1 AA1 5 ASP A 50 LYS A 57 0 SHEET 2 AA1 5 THR A 32 THR A 41 -1 N VAL A 39 O ASP A 50 SHEET 3 AA1 5 TYR A 86 TRP A 94 -1 O LYS A 87 N LYS A 40 SHEET 4 AA1 5 VAL A 114 ARG A 122 1 O THR A 115 N TYR A 86 SHEET 5 AA1 5 THR A 148 ILE A 151 1 O THR A 148 N ILE A 118 SHEET 1 AA2 5 TRP A 232 ARG A 243 0 SHEET 2 AA2 5 TYR A 219 LEU A 227 -1 N LEU A 220 O LEU A 242 SHEET 3 AA2 5 TYR A 276 THR A 282 -1 O PHE A 281 N CYS A 221 SHEET 4 AA2 5 VAL A 304 ALA A 310 1 O CYS A 307 N VAL A 278 SHEET 5 AA2 5 LYS A 333 MET A 336 1 O LYS A 333 N ILE A 308 SHEET 1 AA3 5 ASP B 50 LYS B 57 0 SHEET 2 AA3 5 THR B 32 LYS B 40 -1 N VAL B 39 O ASP B 50 SHEET 3 AA3 5 TYR B 86 TRP B 94 -1 O LYS B 87 N LYS B 40 SHEET 4 AA3 5 VAL B 114 ARG B 122 1 O THR B 115 N TYR B 86 SHEET 5 AA3 5 THR B 148 ILE B 151 1 O THR B 148 N ILE B 118 SHEET 1 AA4 5 TRP B 232 ARG B 243 0 SHEET 2 AA4 5 TYR B 219 LEU B 227 -1 N ARG B 226 O VAL B 233 SHEET 3 AA4 5 TYR B 276 THR B 282 -1 O ARG B 277 N GLU B 225 SHEET 4 AA4 5 VAL B 304 ALA B 310 1 O CYS B 307 N CYS B 280 SHEET 5 AA4 5 LYS B 333 MET B 336 1 O LYS B 333 N ILE B 308 LINK ND1 HIS A 65 ZN ZN A 401 1555 1555 2.02 LINK SG CYS A 97 ZN ZN A 401 1555 1555 2.29 LINK SG CYS A 100 ZN ZN A 401 1555 1555 2.32 LINK SG CYS A 287 ZN ZN A 402 1555 1555 2.30 LINK SG CYS A 290 ZN ZN A 402 1555 1555 2.31 LINK ND1 HIS B 65 ZN ZN B 401 1555 1555 1.99 LINK OE1 GLU B 67 ZN ZN B 401 1555 1555 2.02 LINK SG CYS B 97 ZN ZN B 401 1555 1555 2.71 LINK SG CYS B 100 ZN ZN B 401 1555 1555 2.23 LINK ND1 HIS B 257 ZN ZN B 402 1555 1555 1.89 LINK SG CYS B 287 ZN ZN B 402 1555 1555 2.37 LINK SG CYS B 290 ZN ZN B 402 1555 1555 2.31 CRYST1 61.305 71.559 72.710 119.39 111.00 90.08 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016312 0.000023 0.007379 0.00000 SCALE2 0.000000 0.013974 0.008649 0.00000 SCALE3 0.000000 0.000000 0.017325 0.00000