HEADER TRANSFERASE 28-APR-22 7UUM TITLE CRYSTAL STRUCTURE OF AMINOGLYCOSIDE RESISTANCE ENZYME APMA, COMPLEX TITLE 2 WITH PAROMOMYCIN AND COENZYME A COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINOCYCLITOL ACETYLTRANSFERASE APMA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: APMA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: -GOLD; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET19BTEV KEYWDS XAT, XENOBIOTIC ACETYLTRANSFERASE, LEFT-HANDED BETA HELIX, LBH, KEYWDS 2 ANTIBIOTIC RESISTANCE, AMINOGLYCOSIDE, STRUCTURAL GENOMICS, CSGID, KEYWDS 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, NIAID, KEYWDS 4 NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.J.STOGIOS,E.EVDOKIMOVA,J.OSIPIUK,R.DI LEO,E.BORDELEAU,G.D.WRIGHT, AUTHOR 2 A.SAVCHENKO,A.JOACHIMIAK,K.J.F.SATCHELL,CENTER FOR STRUCTURAL AUTHOR 3 GENOMICS OF INFECTIOUS DISEASES (CSGID),CENTER FOR STRUCTURAL AUTHOR 4 BIOLOGY OF INFECTIOUS DISEASES (CSBID) REVDAT 5 14-FEB-24 7UUM 1 JRNL REVDAT 4 29-NOV-23 7UUM 1 JRNL REVDAT 3 25-OCT-23 7UUM 1 REMARK REVDAT 2 25-JAN-23 7UUM 1 AUTHOR REVDAT 1 02-NOV-22 7UUM 0 JRNL AUTH E.BORDELEAU,P.J.STOGIOS,E.EVDOKIMOVA,K.KOTEVA,A.SAVCHENKO, JRNL AUTH 2 G.D.WRIGHT JRNL TITL MECHANISTIC PLASTICITY IN APMA ENABLES AMINOGLYCOSIDE JRNL TITL 2 PROMISCUITY FOR RESISTANCE. JRNL REF NAT.CHEM.BIOL. V. 20 234 2024 JRNL REFN ESSN 1552-4469 JRNL PMID 37973888 JRNL DOI 10.1038/S41589-023-01483-3 REMARK 2 REMARK 2 RESOLUTION. 2.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20_4459 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 3 NUMBER OF REFLECTIONS : 10423 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 940 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.7500 - 5.2300 1.00 2786 146 0.1855 0.2101 REMARK 3 2 5.2200 - 4.1500 1.00 2762 149 0.1792 0.1899 REMARK 3 3 4.1500 - 3.6300 0.99 2745 142 0.2159 0.2578 REMARK 3 4 3.6300 - 3.3000 0.99 2776 146 0.2405 0.2797 REMARK 3 5 3.2900 - 3.0600 1.00 2742 144 0.2741 0.2573 REMARK 3 6 3.0600 - 2.8800 0.99 2746 142 0.3034 0.4027 REMARK 3 7 2.8800 - 2.7400 0.48 1335 71 0.3373 0.3031 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.312 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.753 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2348 REMARK 3 ANGLE : 0.725 3194 REMARK 3 CHIRALITY : 0.051 350 REMARK 3 PLANARITY : 0.003 402 REMARK 3 DIHEDRAL : 18.317 848 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.5124 -10.6952 7.9181 REMARK 3 T TENSOR REMARK 3 T11: 0.3461 T22: 0.2985 REMARK 3 T33: 0.2818 T12: -0.0726 REMARK 3 T13: 0.0857 T23: -0.0372 REMARK 3 L TENSOR REMARK 3 L11: 8.1689 L22: 1.3391 REMARK 3 L33: 2.4790 L12: -1.0569 REMARK 3 L13: 1.9930 L23: -0.8176 REMARK 3 S TENSOR REMARK 3 S11: 0.3814 S12: -0.8048 S13: -0.1622 REMARK 3 S21: 0.1314 S22: -0.0472 S23: 0.1270 REMARK 3 S31: 0.0046 S32: -0.1968 S33: -0.2137 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 13 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.3929 -6.6715 -5.6586 REMARK 3 T TENSOR REMARK 3 T11: 0.2062 T22: 0.2721 REMARK 3 T33: 0.1895 T12: 0.0757 REMARK 3 T13: 0.0722 T23: 0.0202 REMARK 3 L TENSOR REMARK 3 L11: 2.9372 L22: 4.1699 REMARK 3 L33: 3.1235 L12: 0.8238 REMARK 3 L13: -0.4269 L23: -0.5171 REMARK 3 S TENSOR REMARK 3 S11: -0.0145 S12: 0.2046 S13: 0.3348 REMARK 3 S21: -0.1121 S22: 0.1618 S23: 0.2015 REMARK 3 S31: -0.2547 S32: -0.2605 S33: -0.1328 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 79 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.8814 -2.8073 11.3284 REMARK 3 T TENSOR REMARK 3 T11: 0.3836 T22: 0.2840 REMARK 3 T33: 0.2369 T12: 0.0201 REMARK 3 T13: 0.0434 T23: -0.0552 REMARK 3 L TENSOR REMARK 3 L11: 3.1200 L22: 1.5467 REMARK 3 L33: 2.6055 L12: 0.8873 REMARK 3 L13: 2.5941 L23: 0.1169 REMARK 3 S TENSOR REMARK 3 S11: -0.1161 S12: 0.0114 S13: 0.0572 REMARK 3 S21: 0.1823 S22: 0.1709 S23: -0.0233 REMARK 3 S31: -0.0874 S32: 0.0995 S33: -0.0722 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 133 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4880 -20.1985 17.6541 REMARK 3 T TENSOR REMARK 3 T11: 0.6482 T22: 0.6903 REMARK 3 T33: 0.3391 T12: 0.1039 REMARK 3 T13: -0.0862 T23: 0.1651 REMARK 3 L TENSOR REMARK 3 L11: 2.5160 L22: 3.9740 REMARK 3 L33: 2.7618 L12: -1.8691 REMARK 3 L13: 0.4683 L23: 1.4017 REMARK 3 S TENSOR REMARK 3 S11: -0.2503 S12: -0.9068 S13: -0.3999 REMARK 3 S21: 0.9975 S22: 0.1352 S23: 0.0936 REMARK 3 S31: 0.3024 S32: 0.3989 S33: 0.1481 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 164 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.8873 -0.9807 19.1584 REMARK 3 T TENSOR REMARK 3 T11: 0.4765 T22: 0.4737 REMARK 3 T33: 0.2755 T12: 0.0077 REMARK 3 T13: -0.1127 T23: -0.0999 REMARK 3 L TENSOR REMARK 3 L11: 3.4819 L22: 1.9968 REMARK 3 L33: 1.7600 L12: 0.3196 REMARK 3 L13: -0.8594 L23: 0.6812 REMARK 3 S TENSOR REMARK 3 S11: 0.0378 S12: -0.6501 S13: 0.0028 REMARK 3 S21: 0.4419 S22: 0.1907 S23: -0.2583 REMARK 3 S31: 0.0205 S32: 0.4986 S33: -0.1948 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 208 THROUGH 234 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5247 11.4622 19.9624 REMARK 3 T TENSOR REMARK 3 T11: 0.7491 T22: 0.5199 REMARK 3 T33: 0.4868 T12: -0.1491 REMARK 3 T13: -0.1363 T23: -0.1744 REMARK 3 L TENSOR REMARK 3 L11: 2.3138 L22: 3.1826 REMARK 3 L33: 5.5338 L12: -0.4696 REMARK 3 L13: -2.6620 L23: 2.2758 REMARK 3 S TENSOR REMARK 3 S11: 0.0887 S12: -0.6031 S13: 0.7388 REMARK 3 S21: 0.5329 S22: 0.0175 S23: -0.2097 REMARK 3 S31: -0.4488 S32: 0.7597 S33: -0.0947 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 235 THROUGH 272 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.3977 16.1534 23.7094 REMARK 3 T TENSOR REMARK 3 T11: 0.8276 T22: 0.7583 REMARK 3 T33: 0.5956 T12: 0.1860 REMARK 3 T13: 0.1508 T23: -0.2452 REMARK 3 L TENSOR REMARK 3 L11: 0.4086 L22: 2.8815 REMARK 3 L33: 2.1652 L12: -0.2237 REMARK 3 L13: 0.0523 L23: 0.6140 REMARK 3 S TENSOR REMARK 3 S11: -0.0408 S12: -0.7594 S13: 0.6347 REMARK 3 S21: 0.7075 S22: 0.0953 S23: 0.3204 REMARK 3 S31: -0.7357 S32: -0.5449 S33: 0.0134 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7UUM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-APR-22. REMARK 100 THE DEPOSITION ID IS D_1000264949. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11364 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.740 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 30.10 REMARK 200 R MERGE (I) : 0.19700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.2100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.20 REMARK 200 R MERGE FOR SHELL (I) : 1.79100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.310 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 7JM2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITIHIUM SULFATE, 0.1 M TRIS PH REMARK 280 8.5, 23% PEG3350, 14 MM PAROMOMYCIN, PH 7, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 14555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 15555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 16555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 17555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 18555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 19555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 20555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 21555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 22555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 23555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 24555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 66.87400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.87400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 66.87400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.87400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 66.87400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 66.87400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 66.87400 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 66.87400 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 66.87400 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 66.87400 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 66.87400 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 66.87400 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 66.87400 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 66.87400 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 66.87400 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 66.87400 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 66.87400 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 66.87400 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 33.43700 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 100.31100 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 100.31100 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 33.43700 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 33.43700 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 33.43700 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 100.31100 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 100.31100 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 33.43700 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 100.31100 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 33.43700 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 100.31100 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 33.43700 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 100.31100 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 100.31100 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 100.31100 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 33.43700 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 100.31100 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 33.43700 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 33.43700 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 33.43700 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 100.31100 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 100.31100 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 33.43700 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 33.43700 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 100.31100 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 100.31100 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 100.31100 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 100.31100 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 33.43700 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 100.31100 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 33.43700 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 100.31100 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 33.43700 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 33.43700 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 33.43700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 441 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 442 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 453 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 273 REMARK 465 LEU A 274 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 41 -92.00 -121.97 REMARK 500 TYR A 72 -72.19 -51.54 REMARK 500 ASP A 81 55.30 -157.45 REMARK 500 ASN A 151 -168.89 -75.40 REMARK 500 LYS A 164 68.54 -103.13 REMARK 500 ARG A 230 145.11 -171.95 REMARK 500 ASN A 257 48.23 -103.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP96425 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 7UUJ RELATED DB: PDB REMARK 900 RELATED ID: 7UUK RELATED DB: PDB REMARK 900 RELATED ID: 7UUL RELATED DB: PDB REMARK 900 RELATED ID: 7UUN RELATED DB: PDB REMARK 900 RELATED ID: 7UUO RELATED DB: PDB DBREF1 7UUM A 1 274 UNP A0A1D0AST6_STAAU DBREF2 7UUM A A0A1D0AST6 1 274 SEQADV 7UUM GLN A -1 UNP A0A1D0AST EXPRESSION TAG SEQADV 7UUM GLY A 0 UNP A0A1D0AST EXPRESSION TAG SEQRES 1 A 276 GLN GLY MET LYS THR ARG LEU GLU GLN VAL LEU GLU ARG SEQRES 2 A 276 TYR LEU ASN GLY ARG GLU VAL ALA VAL TRP GLY VAL PRO SEQRES 3 A 276 THR ARG ARG LEU LEU ARG ALA LEU LYS PRO PHE LYS PHE SEQRES 4 A 276 HIS THR ALA ASP ARG VAL ASP PRO GLN TYR HIS TYR VAL SEQRES 5 A 276 VAL ALA VAL THR ASP ASP ASP LEU THR ASP PHE LEU SER SEQRES 6 A 276 ASP GLU GLN SER LYS SER PHE GLN TYR ALA ASN ASP TYR SEQRES 7 A 276 LEU THR PHE ASP ASP GLU GLY GLY GLU LEU PRO PHE GLU SEQRES 8 A 276 ARG MET CYS PHE ASN VAL PRO VAL GLY ARG GLN THR TYR SEQRES 9 A 276 PHE GLY ASP GLY VAL VAL GLY ALA CYS GLU ASN GLY TYR SEQRES 10 A 276 ILE LYS SER ILE GLY GLN PHE THR SER ILE ASN GLY THR SEQRES 11 A 276 ALA GLU ILE HIS ALA ASN HIS GLN LEU ASN MET THR PHE SEQRES 12 A 276 VAL SER ASP ASP ILE GLN ASN PHE PHE ASN GLU GLU SER SEQRES 13 A 276 MET ALA VAL PHE GLN GLU LYS LEU ARG LYS ASP PRO LYS SEQRES 14 A 276 HIS PRO TYR ALA TYR SER LYS GLU PRO MET THR ILE GLY SEQRES 15 A 276 SER ASP VAL TYR ILE GLY ALA HIS ALA PHE ILE ASN ALA SEQRES 16 A 276 SER THR VAL THR SER ILE GLY ASP GLY ALA ILE ILE GLY SEQRES 17 A 276 SER GLY ALA VAL VAL LEU GLU ASN VAL PRO PRO PHE ALA SEQRES 18 A 276 VAL VAL VAL GLY VAL PRO ALA ARG ILE LYS ARG TYR ARG SEQRES 19 A 276 PHE SER LYS GLU MET ILE GLU THR LEU LEU ARG VAL LYS SEQRES 20 A 276 TRP TRP ASP TRP SER ILE GLU GLU ILE ASN GLU ASN VAL SEQRES 21 A 276 ASP ALA LEU ILE SER PRO GLU LEU PHE MET LYS LYS TYR SEQRES 22 A 276 GLY SER LEU HET COA A 301 48 HET PAR A 302 42 HET GOL A 303 6 HETNAM COA COENZYME A HETNAM PAR PAROMOMYCIN HETNAM GOL GLYCEROL HETSYN PAR PAROMOMYCIN I; AMMINOSIDIN; CATENULIN; CRESTOMYCIN; HETSYN 2 PAR MONOMYCIN A; NEOMYCIN E HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 COA C21 H36 N7 O16 P3 S FORMUL 3 PAR C23 H45 N5 O14 FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *53(H2 O) HELIX 1 AA1 THR A 3 LEU A 13 1 11 HELIX 2 AA2 THR A 25 LEU A 32 1 8 HELIX 3 AA3 THR A 54 SER A 63 1 10 HELIX 4 AA4 ASP A 64 PHE A 70 5 7 HELIX 5 AA5 GLN A 71 ASP A 75 1 5 HELIX 6 AA6 GLY A 104 ASN A 113 1 10 HELIX 7 AA7 ASP A 144 PHE A 150 5 7 HELIX 8 AA8 ASN A 151 LYS A 164 1 14 HELIX 9 AA9 HIS A 168 TYR A 172 5 5 HELIX 10 AB1 SER A 234 LYS A 245 1 12 HELIX 11 AB2 TRP A 246 TRP A 249 5 4 HELIX 12 AB3 SER A 250 ASN A 257 1 8 HELIX 13 AB4 ASN A 257 SER A 263 1 7 HELIX 14 AB5 SER A 263 GLY A 272 1 10 SHEET 1 AA1 4 PHE A 37 THR A 39 0 SHEET 2 AA1 4 GLU A 17 TRP A 21 1 N VAL A 20 O HIS A 38 SHEET 3 AA1 4 HIS A 48 ALA A 52 1 O VAL A 51 N ALA A 19 SHEET 4 AA1 4 TYR A 76 THR A 78 1 O LEU A 77 N ALA A 52 SHEET 1 AA2 2 ARG A 90 MET A 91 0 SHEET 2 AA2 2 PRO A 96 VAL A 97 -1 O VAL A 97 N ARG A 90 SHEET 1 AA3 3 ILE A 116 ILE A 119 0 SHEET 2 AA3 3 MET A 177 ILE A 179 1 O MET A 177 N LYS A 117 SHEET 3 AA3 3 SER A 198 ILE A 199 1 O ILE A 199 N THR A 178 SHEET 1 AA4 5 SER A 124 ILE A 125 0 SHEET 2 AA4 5 TYR A 184 ILE A 185 1 O ILE A 185 N SER A 124 SHEET 3 AA4 5 ILE A 204 ILE A 205 1 O ILE A 205 N TYR A 184 SHEET 4 AA4 5 ALA A 219 VAL A 222 1 O ALA A 219 N ILE A 204 SHEET 5 AA4 5 ARG A 227 TYR A 231 -1 O ARG A 227 N VAL A 222 SHEET 1 AA5 3 GLU A 130 HIS A 132 0 SHEET 2 AA5 3 PHE A 190 ASN A 192 1 O ILE A 191 N GLU A 130 SHEET 3 AA5 3 VAL A 210 VAL A 211 1 O VAL A 211 N PHE A 190 CISPEP 1 VAL A 224 PRO A 225 0 -0.49 CRYST1 133.748 133.748 133.748 90.00 90.00 90.00 P 43 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007477 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007477 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007477 0.00000