HEADER DNA BINDING PROTEIN/DNA 29-APR-22 7UV7 TITLE ISORETICULAR, INTERPENETRATING CO-CRYSTAL OF REPLICATION INITIATOR TITLE 2 PROTEIN REPE54 AND SCAFFOLD DUPLEX (21MER) CONTAINING THE COGNATE TITLE 3 REPE54 SEQUENCE AND AN INSERT DUPLEX (10MER) WITH GUEST TAMRA- TITLE 4 LABELLED THYMINE AND T-A RICH SEQUENCE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*AP*CP*CP*TP*GP*TP*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP*CP*CP*TP*CP*A)- COMPND 4 3'); COMPND 5 CHAIN: A; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(*TP*CP*TP*GP*AP*GP*GP*GP*CP*AP*AP*TP*TP*TP*GP*TP*CP*AP*CP*AP*G)- COMPND 10 3'); COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: REPLICATION INITIATION PROTEIN; COMPND 15 CHAIN: C; COMPND 16 SYNONYM: PROTEIN E,PROTEIN REP,PROTEIN F4; COMPND 17 ENGINEERED: YES; COMPND 18 MUTATION: YES; COMPND 19 MOL_ID: 4; COMPND 20 MOLECULE: DNA (5'-D(*GP*AP*CP*GP*GP*TP*AP*AP*TP*T)-3'); COMPND 21 CHAIN: E; COMPND 22 ENGINEERED: YES; COMPND 23 MOL_ID: 5; COMPND 24 MOLECULE: DNA (5'-D(*GP*T(TAMRA)P*AP*AP*TP*TP*AP*CP*CP*G)-3'); COMPND 25 CHAIN: F; COMPND 26 ENGINEERED: YES; COMPND 27 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 4 ORGANISM_TAXID: 562; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 8 ORGANISM_TAXID: 562; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 11 ORGANISM_TAXID: 83333; SOURCE 12 STRAIN: K12; SOURCE 13 GENE: REPE, E, REP, ECOK12F045; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 MOL_ID: 4; SOURCE 17 SYNTHETIC: YES; SOURCE 18 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 19 ORGANISM_TAXID: 562; SOURCE 20 MOL_ID: 5; SOURCE 21 SYNTHETIC: YES; SOURCE 22 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 23 ORGANISM_TAXID: 562 KEYWDS REPLICATION INITIATOR REPE COMPLEX CO-CRYSTAL, DNA BINDING PROTEIN- KEYWDS 2 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.R.ORUN,C.D.SNOW REVDAT 4 01-MAY-24 7UV7 1 JRNL REVDAT 3 01-NOV-23 7UV7 1 JRNL REVDAT 2 25-OCT-23 7UV7 1 REMARK REVDAT 1 17-MAY-23 7UV7 0 JRNL AUTH A.R.ORUN,E.T.SHIELDS,S.DMYTRIW,A.VAJAPAYAJULA,C.K.SLAUGHTER, JRNL AUTH 2 C.D.SNOW JRNL TITL MODULAR PROTEIN-DNA COCRYSTALS AS PRECISE, PROGRAMMABLE JRNL TITL 2 ASSEMBLY SCAFFOLDS. JRNL REF ACS NANO V. 17 13110 2023 JRNL REFN ESSN 1936-086X JRNL PMID 37407546 JRNL DOI 10.1021/ACSNANO.2C07282 REMARK 2 REMARK 2 RESOLUTION. 3.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 12544 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1253 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.8500 - 6.2700 0.93 1280 140 0.2037 0.2293 REMARK 3 2 6.2700 - 4.9800 1.00 1317 150 0.1855 0.2182 REMARK 3 3 4.9800 - 4.3600 1.00 1289 141 0.1792 0.2130 REMARK 3 4 4.3500 - 3.9600 0.98 1266 141 0.2165 0.2414 REMARK 3 5 3.9600 - 3.6700 0.91 1159 132 0.2967 0.3935 REMARK 3 6 3.6700 - 3.4600 0.96 1229 133 0.3134 0.3489 REMARK 3 7 3.4600 - 3.2800 0.96 1237 137 0.2461 0.2870 REMARK 3 8 3.2800 - 3.1400 0.98 1238 133 0.2592 0.3250 REMARK 3 9 3.1400 - 3.0200 1.00 1276 146 0.4749 0.4785 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.481 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.939 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 80.95 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 114.3 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3241 REMARK 3 ANGLE : 0.833 4639 REMARK 3 CHIRALITY : 0.055 503 REMARK 3 PLANARITY : 0.006 379 REMARK 3 DIHEDRAL : 27.842 850 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.1567 -15.8415 -4.1960 REMARK 3 T TENSOR REMARK 3 T11: 1.0869 T22: 0.8451 REMARK 3 T33: 1.2662 T12: 0.1896 REMARK 3 T13: 0.4494 T23: -0.5692 REMARK 3 L TENSOR REMARK 3 L11: 1.8463 L22: 2.4800 REMARK 3 L33: 1.3017 L12: -0.9429 REMARK 3 L13: -1.5115 L23: 0.6192 REMARK 3 S TENSOR REMARK 3 S11: 0.1076 S12: -0.3477 S13: 0.4156 REMARK 3 S21: 0.1618 S22: 0.0793 S23: -0.4082 REMARK 3 S31: -0.2366 S32: 0.0318 S33: -0.3645 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.1725 -35.5159 -27.5832 REMARK 3 T TENSOR REMARK 3 T11:1.5172215 T22: 1.0862 REMARK 3 T33: 0.6942 T12: 0.3564 REMARK 3 T13: 0.4938 T23: -0.3164 REMARK 3 L TENSOR REMARK 3 L11: 1.8590 L22: 0.9687 REMARK 3 L33: 2.2867 L12: -0.4045 REMARK 3 L13: -0.3871 L23: 0.4483 REMARK 3 S TENSOR REMARK 3 S11: 0.0117 S12: 0.7765 S13: -0.4269 REMARK 3 S21: -0.7285 S22: -0.0764 S23: -0.6010 REMARK 3 S31: 0.3057 S32: 0.4994 S33: -0.0010 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 22 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.0397 -38.7281 -29.3605 REMARK 3 T TENSOR REMARK 3 T11: 1.7396 T22: 0.9191 REMARK 3 T33: 0.9917 T12: 0.3668 REMARK 3 T13: 0.6996 T23: -0.6742 REMARK 3 L TENSOR REMARK 3 L11: 2.1418 L22: 1.9747 REMARK 3 L33: 0.2992 L12: -1.2530 REMARK 3 L13: -0.8090 L23: 0.4194 REMARK 3 S TENSOR REMARK 3 S11: 0.1807 S12: 0.1421 S13: 0.0329 REMARK 3 S21: -0.2295 S22: 0.2113 S23: -0.3576 REMARK 3 S31: 0.0217 S32: 0.2444 S33: 0.0914 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 33 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.8748 -17.5894 -7.2115 REMARK 3 T TENSOR REMARK 3 T11: 1.0257 T22: 0.4801 REMARK 3 T33: 1.0236 T12: 0.2418 REMARK 3 T13: 0.5669 T23: -0.4849 REMARK 3 L TENSOR REMARK 3 L11: 3.7193 L22: 3.5435 REMARK 3 L33: 2.6932 L12: -0.8480 REMARK 3 L13: -0.2342 L23: 0.9116 REMARK 3 S TENSOR REMARK 3 S11: 0.0907 S12: -0.4510 S13: 0.9315 REMARK 3 S21: -0.0205 S22: 0.1592 S23: 0.0063 REMARK 3 S31: -0.7455 S32: -0.5363 S33: 0.1385 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 14 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.7704 -49.6519 -14.8467 REMARK 3 T TENSOR REMARK 3 T11: 0.7876 T22: 0.5568 REMARK 3 T33: 0.6722 T12: 0.0355 REMARK 3 T13: -0.0177 T23: -0.3296 REMARK 3 L TENSOR REMARK 3 L11: 3.6596 L22: 3.5479 REMARK 3 L33: 7.4719 L12: 0.0291 REMARK 3 L13: -1.8850 L23: 0.4129 REMARK 3 S TENSOR REMARK 3 S11: 0.1362 S12: 0.2607 S13: -0.9029 REMARK 3 S21: -0.8027 S22: 0.0173 S23: 0.3195 REMARK 3 S31: 0.7568 S32: -0.1542 S33: 0.2849 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 90 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.1403 -50.9724 -6.6710 REMARK 3 T TENSOR REMARK 3 T11: 0.6328 T22: 0.5632 REMARK 3 T33: 0.6170 T12: 0.0935 REMARK 3 T13: -0.0074 T23: -0.1815 REMARK 3 L TENSOR REMARK 3 L11: 2.3142 L22: 3.0040 REMARK 3 L33: 8.8951 L12: 0.6804 REMARK 3 L13: -0.3001 L23: -1.6525 REMARK 3 S TENSOR REMARK 3 S11: 0.1200 S12: -0.1813 S13: -0.5251 REMARK 3 S21: -0.4096 S22: 0.2548 S23: -0.3833 REMARK 3 S31: 1.0915 S32: 0.9441 S33: -0.3695 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 133 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.7848 -40.3505 -5.2441 REMARK 3 T TENSOR REMARK 3 T11: 0.3331 T22: 0.4794 REMARK 3 T33: 0.7148 T12: -0.0521 REMARK 3 T13: 0.0383 T23: -0.2080 REMARK 3 L TENSOR REMARK 3 L11: 3.1157 L22: 3.4944 REMARK 3 L33: 2.2809 L12: -0.4994 REMARK 3 L13: -0.4808 L23: -1.0009 REMARK 3 S TENSOR REMARK 3 S11: 0.2521 S12: -0.1808 S13: -0.5797 REMARK 3 S21: -0.1540 S22: -0.2078 S23: 0.5233 REMARK 3 S31: -0.0549 S32: -0.4985 S33: 0.0285 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 209 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.5741 -32.9006 -7.1418 REMARK 3 T TENSOR REMARK 3 T11: 0.2924 T22: 0.6133 REMARK 3 T33: 0.9187 T12: 0.0437 REMARK 3 T13: -0.0305 T23: -0.0992 REMARK 3 L TENSOR REMARK 3 L11: 6.3361 L22: 7.1787 REMARK 3 L33: 2.8841 L12: -0.7361 REMARK 3 L13: -2.2051 L23: 3.5574 REMARK 3 S TENSOR REMARK 3 S11: -0.0877 S12: 0.2397 S13: -0.1728 REMARK 3 S21: 0.1763 S22: -0.1338 S23: 1.0810 REMARK 3 S31: 0.4685 S32: -0.8907 S33: 0.4513 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 21 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.0923 -61.1661 -45.3993 REMARK 3 T TENSOR REMARK 3 T11: 2.4000 T22: 1.5038 REMARK 3 T33: 1.5458 T12: 0.6595 REMARK 3 T13: 0.7030 T23: -1.8796 REMARK 3 L TENSOR REMARK 3 L11: 1.3174 L22: 2.4161 REMARK 3 L33: 1.8043 L12: -0.3787 REMARK 3 L13: -0.1140 L23: 1.1636 REMARK 3 S TENSOR REMARK 3 S11: -0.0051 S12: -0.0208 S13: 0.1094 REMARK 3 S21: 0.3532 S22: 0.0567 S23: -0.1386 REMARK 3 S31: -0.4782 S32: 0.0276 S33: -0.2264 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 12 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8433 -67.2931 -49.1138 REMARK 3 T TENSOR REMARK 3 T11: 2.5969 T22: 1.9031 REMARK 3 T33: 1.6829 T12: 0.6383 REMARK 3 T13: 0.6335 T23: -1.1433 REMARK 3 L TENSOR REMARK 3 L11: 0.1307 L22: 0.6792 REMARK 3 L33: 0.0270 L12: 0.2805 REMARK 3 L13: 0.0468 L23: 0.1033 REMARK 3 S TENSOR REMARK 3 S11: 0.0269 S12: -0.0236 S13: 0.1548 REMARK 3 S21: 0.1993 S22: -0.0844 S23: -0.0852 REMARK 3 S31: -0.1087 S32: -0.0886 S33: 0.0918 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7UV7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1000264928. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI (111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JAN 31, 2020 REMARK 200 DATA SCALING SOFTWARE : XSCALE JAN 31, 2020, SCALA REMARK 200 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12804 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.020 REMARK 200 RESOLUTION RANGE LOW (A) : 37.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.07113 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.9800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.64480 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.970 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 7U6K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM MGCL2, 30% PEG 400, 100 MM TRIS REMARK 280 HCL PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.74650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 65.69600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 66.23200 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.74650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 65.69600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 66.23200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.74650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 65.69600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 66.23200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.74650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 65.69600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 66.23200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C -11 REMARK 465 ARG C -10 REMARK 465 GLY C -9 REMARK 465 SER C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 GLU C 3 REMARK 465 THR C 4 REMARK 465 ALA C 5 REMARK 465 VAL C 6 REMARK 465 ILE C 7 REMARK 465 ASN C 8 REMARK 465 HIS C 9 REMARK 465 LYS C 10 REMARK 465 LYS C 11 REMARK 465 ARG C 12 REMARK 465 LYS C 13 REMARK 465 ASP C 50 REMARK 465 GLY C 51 REMARK 465 THR C 52 REMARK 465 LEU C 53 REMARK 465 GLN C 54 REMARK 465 GLU C 55 REMARK 465 ARG C 98 REMARK 465 PRO C 99 REMARK 465 GLU C 100 REMARK 465 GLU C 101 REMARK 465 ASP C 102 REMARK 465 ALA C 103 REMARK 465 GLY C 104 REMARK 465 ASP C 105 REMARK 465 GLU C 106 REMARK 465 LYS C 107 REMARK 465 GLY C 108 REMARK 465 LEU C 142 REMARK 465 GLN C 143 REMARK 465 ASN C 144 REMARK 465 THR C 246 REMARK 465 SER C 247 REMARK 465 MET C 248 REMARK 465 THR C 249 REMARK 465 THR C 250 REMARK 465 GLY C 251 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU C 110 CG CD OE1 OE2 REMARK 470 LYS C 117 CE NZ REMARK 470 ARG C 145 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT F 13 C5 DT F 13 C6 -0.047 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG B 25 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DG B 42 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DG E 24 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DA F 14 C3' - C2' - C1' ANGL. DEV. = -5.4 DEGREES REMARK 500 DA F 14 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN C 132 108.44 -50.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 101 O REMARK 620 2 GLU C 77 OE2 143.3 REMARK 620 3 ASP C 81 OD1 106.3 105.5 REMARK 620 4 ASP C 81 OD2 76.6 138.9 52.6 REMARK 620 5 HOH C 401 O 73.1 77.2 114.6 141.1 REMARK 620 6 HOH C 402 O 70.3 111.5 60.0 88.2 59.0 REMARK 620 7 HOH C 404 O 115.7 63.7 64.4 116.2 59.3 49.4 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7RVA RELATED DB: PDB REMARK 900 7RVA CONTAINS THE SAME PROTEIN COMPLEXED TO A SHORTER DNA DUPLEX. REMARK 900 RELATED ID: 7U6K RELATED DB: PDB REMARK 900 7U6K WAS THE STARTING MODEL FOR THIS STRUCTURE AND CONTAINS THE REMARK 900 SAME PROTEIN COMPLEXED TO A DIFFERENT DUPLEX SEQUENCE. REMARK 900 RELATED ID: 7U7O RELATED DB: PDB REMARK 900 7U7O CONTAINS THE SAME PROTEIN COMPLEXED TO A DIFFERENT DNA DUPLEX. REMARK 900 RELATED ID: 7UOG RELATED DB: PDB REMARK 900 7UOG CONTAINS THE SAME PROTEIN COMPLEXED TO A DIFFERENT DNA DUPLEX. REMARK 900 RELATED ID: 7UFX RELATED DB: PDB REMARK 900 7UFX CONTAINS THE SAME PROTEIN COMPLEXED TO A DIFFERENT DNA DUPLEX. REMARK 900 RELATED ID: 7UR0 RELATED DB: PDB REMARK 900 7UR0 CONTAINS THE SAME PROTEIN COMPLEXED TO A DNA DUPLEX WITH THE REMARK 900 SAME SEQUENCE. DBREF 7UV7 A 0 20 PDB 7UV7 7UV7 0 20 DBREF 7UV7 B 22 42 PDB 7UV7 7UV7 22 42 DBREF 7UV7 C 1 251 UNP P03856 REPE1_ECOLI 1 251 DBREF 7UV7 E 21 30 PDB 7UV7 7UV7 21 30 DBREF 7UV7 F 12 21 PDB 7UV7 7UV7 12 21 SEQADV 7UV7 MET C -11 UNP P03856 INITIATING METHIONINE SEQADV 7UV7 ARG C -10 UNP P03856 EXPRESSION TAG SEQADV 7UV7 GLY C -9 UNP P03856 EXPRESSION TAG SEQADV 7UV7 SER C -8 UNP P03856 EXPRESSION TAG SEQADV 7UV7 HIS C -7 UNP P03856 EXPRESSION TAG SEQADV 7UV7 HIS C -6 UNP P03856 EXPRESSION TAG SEQADV 7UV7 HIS C -5 UNP P03856 EXPRESSION TAG SEQADV 7UV7 HIS C -4 UNP P03856 EXPRESSION TAG SEQADV 7UV7 HIS C -3 UNP P03856 EXPRESSION TAG SEQADV 7UV7 HIS C -2 UNP P03856 EXPRESSION TAG SEQADV 7UV7 GLY C -1 UNP P03856 EXPRESSION TAG SEQADV 7UV7 SER C 0 UNP P03856 EXPRESSION TAG SEQADV 7UV7 PRO C 118 UNP P03856 ARG 118 ENGINEERED MUTATION SEQRES 1 A 21 DA DC DC DT DG DT DG DA DC DA DA DA DT SEQRES 2 A 21 DT DG DC DC DC DT DC DA SEQRES 1 B 21 DT DC DT DG DA DG DG DG DC DA DA DT DT SEQRES 2 B 21 DT DG DT DC DA DC DA DG SEQRES 1 C 263 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 C 263 ALA GLU THR ALA VAL ILE ASN HIS LYS LYS ARG LYS ASN SEQRES 3 C 263 SER PRO ARG ILE VAL GLN SER ASN ASP LEU THR GLU ALA SEQRES 4 C 263 ALA TYR SER LEU SER ARG ASP GLN LYS ARG MET LEU TYR SEQRES 5 C 263 LEU PHE VAL ASP GLN ILE ARG LYS SER ASP GLY THR LEU SEQRES 6 C 263 GLN GLU HIS ASP GLY ILE CYS GLU ILE HIS VAL ALA LYS SEQRES 7 C 263 TYR ALA GLU ILE PHE GLY LEU THR SER ALA GLU ALA SER SEQRES 8 C 263 LYS ASP ILE ARG GLN ALA LEU LYS SER PHE ALA GLY LYS SEQRES 9 C 263 GLU VAL VAL PHE TYR ARG PRO GLU GLU ASP ALA GLY ASP SEQRES 10 C 263 GLU LYS GLY TYR GLU SER PHE PRO TRP PHE ILE LYS PRO SEQRES 11 C 263 ALA HIS SER PRO SER ARG GLY LEU TYR SER VAL HIS ILE SEQRES 12 C 263 ASN PRO TYR LEU ILE PRO PHE PHE ILE GLY LEU GLN ASN SEQRES 13 C 263 ARG PHE THR GLN PHE ARG LEU SER GLU THR LYS GLU ILE SEQRES 14 C 263 THR ASN PRO TYR ALA MET ARG LEU TYR GLU SER LEU CYS SEQRES 15 C 263 GLN TYR ARG LYS PRO ASP GLY SER GLY ILE VAL SER LEU SEQRES 16 C 263 LYS ILE ASP TRP ILE ILE GLU ARG TYR GLN LEU PRO GLN SEQRES 17 C 263 SER TYR GLN ARG MET PRO ASP PHE ARG ARG ARG PHE LEU SEQRES 18 C 263 GLN VAL CYS VAL ASN GLU ILE ASN SER ARG THR PRO MET SEQRES 19 C 263 ARG LEU SER TYR ILE GLU LYS LYS LYS GLY ARG GLN THR SEQRES 20 C 263 THR HIS ILE VAL PHE SER PHE ARG ASP ILE THR SER MET SEQRES 21 C 263 THR THR GLY SEQRES 1 E 10 DG DA DC DG DG DT DA DA DT DT SEQRES 1 F 10 DG DT DA DA DT DT DA DC DC DG HET MG C 301 1 HETNAM MG MAGNESIUM ION FORMUL 6 MG MG 2+ FORMUL 7 HOH *8(H2 O) HELIX 1 AA1 ASN C 22 GLU C 26 1 5 HELIX 2 AA2 SER C 32 LYS C 48 1 17 HELIX 3 AA3 VAL C 64 PHE C 71 1 8 HELIX 4 AA4 THR C 74 SER C 88 1 15 HELIX 5 AA5 ASN C 132 TYR C 134 5 3 HELIX 6 AA6 LEU C 135 ILE C 140 1 6 HELIX 7 AA7 SER C 152 THR C 154 5 3 HELIX 8 AA8 ASN C 159 GLN C 171 1 13 HELIX 9 AA9 ILE C 185 GLN C 193 1 9 HELIX 10 AB1 PRO C 195 GLN C 199 5 5 HELIX 11 AB2 ARG C 200 PHE C 208 1 9 HELIX 12 AB3 PHE C 208 THR C 220 1 13 SHEET 1 AA1 2 ARG C 17 SER C 21 0 SHEET 2 AA1 2 PHE C 146 ARG C 150 -1 O THR C 147 N GLN C 20 SHEET 1 AA2 2 ILE C 59 HIS C 63 0 SHEET 2 AA2 2 LEU C 126 HIS C 130 -1 O VAL C 129 N CYS C 60 SHEET 1 AA3 2 GLU C 93 PHE C 96 0 SHEET 2 AA3 2 GLU C 110 PRO C 113 -1 O PHE C 112 N VAL C 94 SHEET 1 AA4 3 GLY C 179 LYS C 184 0 SHEET 2 AA4 3 GLN C 234 ASP C 244 -1 O PHE C 240 N VAL C 181 SHEET 3 AA4 3 MET C 222 LYS C 231 -1 N LYS C 231 O GLN C 234 LINK O HOH A 101 MG MG C 301 1555 1555 1.96 LINK OE2 GLU C 77 MG MG C 301 1555 1555 1.72 LINK OD1 ASP C 81 MG MG C 301 1555 1555 2.30 LINK OD2 ASP C 81 MG MG C 301 1555 1555 2.61 LINK MG MG C 301 O HOH C 401 1555 1555 2.05 LINK MG MG C 301 O HOH C 402 1555 1555 2.43 LINK MG MG C 301 O HOH C 404 1555 1555 2.81 CRYST1 73.493 131.392 132.464 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013607 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007611 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007549 0.00000