HEADER DE NOVO PROTEIN 02-MAY-22 7UVJ TITLE RATIONALLY DESIGNED ED1 EPITOPE-SCAFFOLD IMMUNOGEN FOR SARS-COV-2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: APOLIPOPROTEIN E; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: APO-E, ED1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: APOE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS IMMUNOGEN, SARS-COV-2, VIRAL EPITOPE, SCAFFOLD, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.H.YENNAWAR,Y.L.VISHWESHWARAIAH,N.V.DOKHOLYAN REVDAT 4 17-JAN-24 7UVJ 1 JRNL REVDAT 3 18-OCT-23 7UVJ 1 REMARK REVDAT 2 19-OCT-22 7UVJ 1 JRNL REVDAT 1 12-OCT-22 7UVJ 0 JRNL AUTH Y.L.VISHWESHWARAIAH,B.HNATH,B.RACKLEY,J.WANG,A.GONTU, JRNL AUTH 2 M.CHANDLER,K.A.AFONIN,S.V.KUCHIPUDI,N.CHRISTENSEN, JRNL AUTH 3 N.H.YENNAWAR,N.V.DOKHOLYAN JRNL TITL ADAPTATION-PROOF SARS-COV-2 VACCINE DESIGN. JRNL REF ADV FUNCT MATER V. 32 2022 JRNL REFN ISSN 1616-301X JRNL PMID 36590650 JRNL DOI 10.1002/ADFM.202206055 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.L.VISHWESHWARAIAH,B.HNATH,B.RACKLEY,J.WANG,A.GONTU, REMARK 1 AUTH 2 M.CHANDLER,K.A.AFONIN,S.V.KUCHIPUDI,N.CHRISTENSEN, REMARK 1 AUTH 3 N.H.YENNAWAR,N.V.DOKHOLYAN REMARK 1 TITL ADAPTATION-PROOF SARS-COV-2 VACCINE DESIGN. REMARK 1 REF BIORXIV 2022 REMARK 1 REFN ISSN 2692-8205 REMARK 1 PMID 35611332 REMARK 1 DOI 10.1101/2022.05.17.492310 REMARK 1 REFERENCE 2 REMARK 1 AUTH Y.L.VISHWESHWARAIAH,B.HNATH,B.RACKLEY,J.WANG,A.GONTU, REMARK 1 AUTH 2 M.CHANDLER,K.A.AFONIN,S.V.KUCHIPUDI,N.CHRISTENSEN, REMARK 1 AUTH 3 N.H.YENNAWAR,N.V.DOKHOLYAN REMARK 1 TITL ADAPTATION-PROOF SARS-COV-2 VACCINE DESIGN REMARK 1 REF ADV FUNCT MATER 06055 2022 REMARK 1 REFN ESSN 1616-3028 REMARK 1 DOI 10.1002/ADFM.202206055 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 18803 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.268 REMARK 3 R VALUE (WORKING SET) : 0.263 REMARK 3 FREE R VALUE : 0.312 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.830 REMARK 3 FREE R VALUE TEST SET COUNT : 1848 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 17.8700 - 4.6600 0.92 1261 136 0.3053 0.3203 REMARK 3 2 4.6500 - 3.7100 0.89 1215 130 0.2391 0.2686 REMARK 3 3 3.7100 - 3.2400 0.95 1281 138 0.2412 0.2956 REMARK 3 4 3.2400 - 2.9500 0.98 1328 146 0.2529 0.2775 REMARK 3 5 2.9500 - 2.7400 0.98 1311 144 0.2735 0.3560 REMARK 3 6 2.7400 - 2.5800 0.98 1341 141 0.2703 0.3239 REMARK 3 7 2.5800 - 2.4500 0.99 1317 153 0.2680 0.3215 REMARK 3 8 2.4500 - 2.3400 0.99 1342 148 0.2557 0.3134 REMARK 3 9 2.3400 - 2.2500 0.99 1321 139 0.2558 0.3313 REMARK 3 10 2.2500 - 2.1700 0.99 1325 150 0.2591 0.3251 REMARK 3 11 2.1700 - 2.1100 0.99 1352 147 0.2823 0.3330 REMARK 3 12 2.1100 - 2.0500 1.00 1323 147 0.2691 0.3094 REMARK 3 13 2.0500 - 1.9900 0.91 1238 129 0.2712 0.3388 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.318 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.859 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2409 REMARK 3 ANGLE : 0.481 3224 REMARK 3 CHIRALITY : 0.029 351 REMARK 3 PLANARITY : 0.003 421 REMARK 3 DIHEDRAL : 12.351 943 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1693 -18.1905 -7.9399 REMARK 3 T TENSOR REMARK 3 T11: 0.5345 T22: 0.8718 REMARK 3 T33: 0.5601 T12: 0.1397 REMARK 3 T13: -0.0356 T23: 0.0114 REMARK 3 L TENSOR REMARK 3 L11: 1.1343 L22: 3.2571 REMARK 3 L33: 1.5037 L12: -0.3610 REMARK 3 L13: 0.1094 L23: -2.0196 REMARK 3 S TENSOR REMARK 3 S11: 0.0502 S12: -0.2071 S13: -0.3126 REMARK 3 S21: 0.3066 S22: -0.3586 S23: -0.7011 REMARK 3 S31: 0.1280 S32: 1.0187 S33: 0.3085 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.9677 -8.7661 -2.0939 REMARK 3 T TENSOR REMARK 3 T11: 0.0822 T22: 0.0688 REMARK 3 T33: 0.1213 T12: 0.0511 REMARK 3 T13: 0.0174 T23: -0.0431 REMARK 3 L TENSOR REMARK 3 L11: 4.1633 L22: 1.0196 REMARK 3 L33: 1.8090 L12: -0.7164 REMARK 3 L13: 1.5868 L23: -0.2095 REMARK 3 S TENSOR REMARK 3 S11: 0.1133 S12: 0.1232 S13: -0.1888 REMARK 3 S21: 0.0384 S22: 0.1232 S23: -0.0390 REMARK 3 S31: 0.1588 S32: 0.1096 S33: -0.1292 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 44 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1006 -1.2720 -3.3300 REMARK 3 T TENSOR REMARK 3 T11: 0.0245 T22: 0.1169 REMARK 3 T33: 0.2062 T12: 0.0326 REMARK 3 T13: 0.0494 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 4.0115 L22: 1.3966 REMARK 3 L33: 1.1913 L12: -0.3805 REMARK 3 L13: 0.7571 L23: -0.1920 REMARK 3 S TENSOR REMARK 3 S11: -0.0687 S12: 0.1020 S13: 0.3800 REMARK 3 S21: 0.0202 S22: 0.1370 S23: -0.1904 REMARK 3 S31: -0.0976 S32: 0.2118 S33: -0.0215 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 80 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.8424 -11.7419 -14.4479 REMARK 3 T TENSOR REMARK 3 T11: 0.4783 T22: 0.6973 REMARK 3 T33: 0.7318 T12: -0.0482 REMARK 3 T13: -0.1965 T23: 0.0795 REMARK 3 L TENSOR REMARK 3 L11: 4.7897 L22: 4.4412 REMARK 3 L33: 4.3588 L12: -3.8205 REMARK 3 L13: 0.1290 L23: -2.5320 REMARK 3 S TENSOR REMARK 3 S11: -0.1105 S12: -0.3945 S13: -0.1843 REMARK 3 S21: 0.2387 S22: -0.1939 S23: -0.5780 REMARK 3 S31: -0.1428 S32: 0.7324 S33: 0.2787 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4998 -1.4929 3.4125 REMARK 3 T TENSOR REMARK 3 T11: 0.0895 T22: -0.0374 REMARK 3 T33: 0.1424 T12: 0.0426 REMARK 3 T13: -0.0064 T23: 0.0359 REMARK 3 L TENSOR REMARK 3 L11: 0.8404 L22: 0.8899 REMARK 3 L33: 0.4323 L12: -0.0467 REMARK 3 L13: 0.3327 L23: -0.0783 REMARK 3 S TENSOR REMARK 3 S11: -0.0439 S12: 0.0025 S13: 0.0893 REMARK 3 S21: -0.0215 S22: -0.0125 S23: -0.0017 REMARK 3 S31: -0.0214 S32: 0.0150 S33: 0.0022 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 125 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.5226 10.0483 19.0348 REMARK 3 T TENSOR REMARK 3 T11: 0.8083 T22: 0.6766 REMARK 3 T33: 0.7623 T12: -0.0315 REMARK 3 T13: -0.0848 T23: -0.0582 REMARK 3 L TENSOR REMARK 3 L11: 1.6309 L22: 0.9760 REMARK 3 L33: 1.2072 L12: -0.8978 REMARK 3 L13: 0.1711 L23: 0.6573 REMARK 3 S TENSOR REMARK 3 S11: -0.1072 S12: -0.5615 S13: 0.7007 REMARK 3 S21: 1.2731 S22: -0.3132 S23: -0.5436 REMARK 3 S31: -0.5686 S32: 0.0086 S33: 0.4145 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 131 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.3911 -9.2948 6.4056 REMARK 3 T TENSOR REMARK 3 T11: 0.0856 T22: 0.0045 REMARK 3 T33: 0.1585 T12: -0.0179 REMARK 3 T13: 0.0295 T23: 0.0088 REMARK 3 L TENSOR REMARK 3 L11: 3.9806 L22: 1.6813 REMARK 3 L33: 2.9990 L12: 1.6984 REMARK 3 L13: 2.7425 L23: 0.9193 REMARK 3 S TENSOR REMARK 3 S11: 0.0843 S12: -0.1413 S13: -0.0492 REMARK 3 S21: 0.1583 S22: -0.1845 S23: 0.0135 REMARK 3 S31: 0.1457 S32: -0.0094 S33: 0.0270 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 23 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.3513 16.7685 -3.2717 REMARK 3 T TENSOR REMARK 3 T11: 0.1086 T22: 0.0346 REMARK 3 T33: 0.2038 T12: 0.0422 REMARK 3 T13: -0.0867 T23: 0.0508 REMARK 3 L TENSOR REMARK 3 L11: 1.5103 L22: 1.3307 REMARK 3 L33: 0.5780 L12: -0.6750 REMARK 3 L13: -0.0501 L23: 0.0896 REMARK 3 S TENSOR REMARK 3 S11: 0.0862 S12: 0.1283 S13: -0.1061 REMARK 3 S21: -0.0851 S22: 0.0270 S23: 0.1722 REMARK 3 S31: -0.0505 S32: -0.0985 S33: -0.0170 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 80 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.4542 25.8096 -13.9455 REMARK 3 T TENSOR REMARK 3 T11: 0.8009 T22: 1.1715 REMARK 3 T33: 0.7698 T12: 0.5304 REMARK 3 T13: 0.1799 T23: 0.0598 REMARK 3 L TENSOR REMARK 3 L11: 0.1352 L22: 0.4873 REMARK 3 L33: 0.3948 L12: 0.2558 REMARK 3 L13: 0.2141 L23: 0.3902 REMARK 3 S TENSOR REMARK 3 S11: -0.1353 S12: -0.3467 S13: -0.0281 REMARK 3 S21: 0.0015 S22: 0.0391 S23: 0.0589 REMARK 3 S31: -0.1038 S32: -0.1418 S33: 0.1010 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 91 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9324 13.9618 3.3041 REMARK 3 T TENSOR REMARK 3 T11: 0.0286 T22: -0.0150 REMARK 3 T33: 0.1659 T12: -0.0201 REMARK 3 T13: -0.0392 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 3.3761 L22: 1.7810 REMARK 3 L33: 0.9819 L12: 1.5704 REMARK 3 L13: -1.0793 L23: -0.4287 REMARK 3 S TENSOR REMARK 3 S11: -0.0242 S12: 0.0227 S13: 0.0007 REMARK 3 S21: -0.0424 S22: -0.0523 S23: 0.0434 REMARK 3 S31: 0.0211 S32: -0.0289 S33: 0.0286 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 125 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.3936 5.3466 17.7161 REMARK 3 T TENSOR REMARK 3 T11: 0.5368 T22: 0.5214 REMARK 3 T33: 0.3300 T12: -0.1675 REMARK 3 T13: -0.0901 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 5.2798 L22: 8.0345 REMARK 3 L33: 2.5425 L12: 2.3688 REMARK 3 L13: 0.5525 L23: 4.4099 REMARK 3 S TENSOR REMARK 3 S11: -0.0400 S12: -0.3630 S13: -0.4587 REMARK 3 S21: -0.1547 S22: -0.5231 S23: 0.5377 REMARK 3 S31: 0.1214 S32: -1.2592 S33: 0.5557 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 132 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.5696 22.0136 5.9970 REMARK 3 T TENSOR REMARK 3 T11: 0.0574 T22: 0.0144 REMARK 3 T33: 0.1253 T12: 0.0059 REMARK 3 T13: -0.0237 T23: 0.0249 REMARK 3 L TENSOR REMARK 3 L11: 5.6700 L22: 1.7987 REMARK 3 L33: 4.7709 L12: 2.4367 REMARK 3 L13: -4.2744 L23: -1.9689 REMARK 3 S TENSOR REMARK 3 S11: 0.0715 S12: -0.1736 S13: -0.0330 REMARK 3 S21: 0.0441 S22: -0.1886 S23: -0.1613 REMARK 3 S31: -0.1662 S32: 0.0214 S33: 0.0558 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7UVJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1000264909. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : RIGAKU HYPIX-6000HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : CRYSALISPRO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18932 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 95.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.8700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.21600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 1BZ4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM FORMATE, 20% W/V PEG3350, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.81550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 20 REMARK 465 HIS B 21 REMARK 465 MET B 22 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 82 -141.40 -118.03 REMARK 500 ALA A 87 24.47 80.79 REMARK 500 GLU A 88 -65.34 71.23 REMARK 500 GLU B 81 -157.14 -123.00 REMARK 500 THR B 84 72.98 49.94 REMARK 500 ALA B 125 40.17 -94.44 REMARK 500 ALA B 125 46.86 -94.44 REMARK 500 MET B 126 59.73 -111.08 REMARK 500 LEU B 127 76.23 -37.74 REMARK 500 LEU B 127 76.23 -0.97 REMARK 500 GLN B 129 97.34 -57.66 REMARK 500 SER B 130 69.98 -157.19 REMARK 500 THR B 131 33.37 -94.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 89 THR A 90 132.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 432 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH B 433 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH B 434 DISTANCE = 6.03 ANGSTROMS DBREF 7UVJ A 23 166 UNP P02649 APOE_HUMAN 40 183 DBREF 7UVJ B 23 166 UNP P02649 APOE_HUMAN 40 183 SEQADV 7UVJ GLY A 20 UNP P02649 EXPRESSION TAG SEQADV 7UVJ HIS A 21 UNP P02649 EXPRESSION TAG SEQADV 7UVJ MET A 22 UNP P02649 EXPRESSION TAG SEQADV 7UVJ LYS A 132 UNP P02649 GLU 149 CONFLICT SEQADV 7UVJ ASN A 136 UNP P02649 VAL 153 CONFLICT SEQADV 7UVJ GLY A 143 UNP P02649 ARG 160 CONFLICT SEQADV 7UVJ GLN A 146 UNP P02649 ARG 163 CONFLICT SEQADV 7UVJ ASP A 147 UNP P02649 LYS 164 CONFLICT SEQADV 7UVJ GLY B 20 UNP P02649 EXPRESSION TAG SEQADV 7UVJ HIS B 21 UNP P02649 EXPRESSION TAG SEQADV 7UVJ MET B 22 UNP P02649 EXPRESSION TAG SEQADV 7UVJ LYS B 132 UNP P02649 GLU 149 CONFLICT SEQADV 7UVJ ASN B 136 UNP P02649 VAL 153 CONFLICT SEQADV 7UVJ GLY B 143 UNP P02649 ARG 160 CONFLICT SEQADV 7UVJ GLN B 146 UNP P02649 ARG 163 CONFLICT SEQADV 7UVJ ASP B 147 UNP P02649 LYS 164 CONFLICT SEQRES 1 A 147 GLY HIS MET SER GLY GLN ARG TRP GLU LEU ALA LEU GLY SEQRES 2 A 147 ARG PHE TRP ASP TYR LEU ARG TRP VAL GLN THR LEU SER SEQRES 3 A 147 GLU GLN VAL GLN GLU GLU LEU LEU SER SER GLN VAL THR SEQRES 4 A 147 GLN GLU LEU ARG ALA LEU MET ASP GLU THR MET LYS GLU SEQRES 5 A 147 LEU LYS ALA TYR LYS SER GLU LEU GLU GLU GLN LEU THR SEQRES 6 A 147 PRO VAL ALA GLU GLU THR ARG ALA ARG LEU SER LYS GLU SEQRES 7 A 147 LEU GLN ALA ALA GLN ALA ARG LEU GLY ALA ASP MET GLU SEQRES 8 A 147 ASP VAL CYS GLY ARG LEU VAL GLN TYR ARG GLY GLU VAL SEQRES 9 A 147 GLN ALA MET LEU GLY GLN SER THR LYS GLU LEU ARG ASN SEQRES 10 A 147 ARG LEU ALA SER HIS LEU GLY LYS LEU GLN ASP ARG LEU SEQRES 11 A 147 LEU ARG ASP ALA ASP ASP LEU GLN LYS ARG LEU ALA VAL SEQRES 12 A 147 TYR GLN ALA GLY SEQRES 1 B 147 GLY HIS MET SER GLY GLN ARG TRP GLU LEU ALA LEU GLY SEQRES 2 B 147 ARG PHE TRP ASP TYR LEU ARG TRP VAL GLN THR LEU SER SEQRES 3 B 147 GLU GLN VAL GLN GLU GLU LEU LEU SER SER GLN VAL THR SEQRES 4 B 147 GLN GLU LEU ARG ALA LEU MET ASP GLU THR MET LYS GLU SEQRES 5 B 147 LEU LYS ALA TYR LYS SER GLU LEU GLU GLU GLN LEU THR SEQRES 6 B 147 PRO VAL ALA GLU GLU THR ARG ALA ARG LEU SER LYS GLU SEQRES 7 B 147 LEU GLN ALA ALA GLN ALA ARG LEU GLY ALA ASP MET GLU SEQRES 8 B 147 ASP VAL CYS GLY ARG LEU VAL GLN TYR ARG GLY GLU VAL SEQRES 9 B 147 GLN ALA MET LEU GLY GLN SER THR LYS GLU LEU ARG ASN SEQRES 10 B 147 ARG LEU ALA SER HIS LEU GLY LYS LEU GLN ASP ARG LEU SEQRES 11 B 147 LEU ARG ASP ALA ASP ASP LEU GLN LYS ARG LEU ALA VAL SEQRES 12 B 147 TYR GLN ALA GLY HET GOL A 201 6 HET PEG A 202 7 HET ACT A 203 4 HET GOL B 201 6 HET PEG B 202 7 HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 4 PEG 2(C4 H10 O3) FORMUL 5 ACT C2 H3 O2 1- FORMUL 8 HOH *282(H2 O) HELIX 1 AA1 GLN A 25 THR A 43 1 19 HELIX 2 AA2 SER A 45 SER A 54 1 10 HELIX 3 AA3 SER A 55 GLU A 80 1 26 HELIX 4 AA4 THR A 90 VAL A 123 1 34 HELIX 5 AA5 SER A 130 GLY A 166 1 37 HELIX 6 AA6 GLN B 25 GLN B 42 1 18 HELIX 7 AA7 SER B 45 SER B 54 1 10 HELIX 8 AA8 SER B 55 GLU B 80 1 26 HELIX 9 AA9 THR B 90 ALA B 125 1 36 HELIX 10 AB1 THR B 131 GLY B 166 1 36 CRYST1 39.060 95.631 40.916 90.00 108.58 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025602 0.000000 0.008604 0.00000 SCALE2 0.000000 0.010457 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025784 0.00000