HEADER LIGASE 06-MAY-22 7UY2 TITLE STRUCTURE OF RNF31 IN COMPLEX WITH FP06649, A HELICON POLYPEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE RNF31; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HOIL-1-INTERACTING PROTEIN,HOIP,RING FINGER PROTEIN 31,ZINC COMPND 5 IN-BETWEEN-RING-FINGER UBIQUITIN-ASSOCIATED DOMAIN PROTEIN; COMPND 6 EC: 6.3.2.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: HELICON FP06649; COMPND 10 CHAIN: C, D; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: STAPLED PEPTIDE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RNF31, ZIBRA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS INHIBITOR, COMPLEX, STAPLED, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR S.AGARWAL,T.THOMSON,S.WAHL,W.WALKUP,T.OLSEN,G.VERDINE,J.MCGEE REVDAT 2 25-OCT-23 7UY2 1 REMARK REVDAT 1 28-DEC-22 7UY2 0 JRNL AUTH K.LI,O.S.TOKAREVA,T.M.THOMSON,S.C.T.WAHL,T.L.TRAVALINE, JRNL AUTH 2 J.D.RAMIREZ,S.K.CHOUDARY,S.AGARWAL,W.G.WALKUP 4TH,T.J.OLSEN, JRNL AUTH 3 M.J.BRENNAN,G.L.VERDINE,J.H.MCGEE JRNL TITL DE NOVO MAPPING OF ALPHA-HELIX RECOGNITION SITES ON PROTEIN JRNL TITL 2 SURFACES USING UNBIASED LIBRARIES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 119 35119 2022 JRNL REFN ESSN 1091-6490 JRNL PMID 36534810 JRNL DOI 10.1073/PNAS.2210435119 REMARK 2 REMARK 2 RESOLUTION. 2.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20_4444 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 12528 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.840 REMARK 3 FREE R VALUE TEST SET COUNT : 606 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.8000 - 3.9900 1.00 2994 150 0.1887 0.2433 REMARK 3 2 3.9800 - 3.1600 1.00 2964 166 0.2087 0.2759 REMARK 3 3 3.1600 - 2.7600 1.00 2979 131 0.2530 0.3042 REMARK 3 4 2.7600 - 2.5100 1.00 2985 159 0.2709 0.3187 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.264 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.868 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.77 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3070 REMARK 3 ANGLE : 0.549 4165 REMARK 3 CHIRALITY : 0.033 466 REMARK 3 PLANARITY : 0.004 555 REMARK 3 DIHEDRAL : 3.587 424 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 166 THROUGH 177 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.5062 -5.7282 -32.9724 REMARK 3 T TENSOR REMARK 3 T11: 0.6835 T22: 0.5393 REMARK 3 T33: 0.6534 T12: 0.1004 REMARK 3 T13: -0.2276 T23: -0.0331 REMARK 3 L TENSOR REMARK 3 L11: 5.6926 L22: 4.1068 REMARK 3 L33: 3.4177 L12: 0.8828 REMARK 3 L13: 2.2956 L23: -2.6220 REMARK 3 S TENSOR REMARK 3 S11: -0.8489 S12: -0.7294 S13: 1.2403 REMARK 3 S21: -0.3100 S22: 0.6435 S23: 0.8457 REMARK 3 S31: -1.1319 S32: -1.6553 S33: 0.3452 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 4 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1552 11.9480 -0.7197 REMARK 3 T TENSOR REMARK 3 T11: 0.7686 T22: 0.5857 REMARK 3 T33: 0.3196 T12: -0.0837 REMARK 3 T13: -0.0308 T23: 0.0211 REMARK 3 L TENSOR REMARK 3 L11: 6.0303 L22: 3.2647 REMARK 3 L33: 9.2755 L12: 0.6552 REMARK 3 L13: -3.4052 L23: -1.5565 REMARK 3 S TENSOR REMARK 3 S11: 0.2921 S12: 0.5691 S13: 0.1882 REMARK 3 S21: 0.8036 S22: -0.5160 S23: 0.0528 REMARK 3 S31: -1.8427 S32: -0.9952 S33: 0.1748 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 4 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.9643 -28.4430 -26.0938 REMARK 3 T TENSOR REMARK 3 T11: 0.8463 T22: 0.9477 REMARK 3 T33: 0.7716 T12: 0.0697 REMARK 3 T13: -0.0095 T23: 0.0621 REMARK 3 L TENSOR REMARK 3 L11: 3.3264 L22: 9.1174 REMARK 3 L33: 3.4698 L12: 0.0586 REMARK 3 L13: 3.3297 L23: -0.2155 REMARK 3 S TENSOR REMARK 3 S11: 0.6580 S12: 1.2143 S13: -1.5880 REMARK 3 S21: -0.0181 S22: 1.2083 S23: 0.9474 REMARK 3 S31: 1.3270 S32: 0.8582 S33: -1.5126 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.3350 -3.1972 -5.6490 REMARK 3 T TENSOR REMARK 3 T11: 0.4529 T22: 0.4309 REMARK 3 T33: 0.3543 T12: -0.0117 REMARK 3 T13: -0.0554 T23: -0.0799 REMARK 3 L TENSOR REMARK 3 L11: 5.6293 L22: 0.7001 REMARK 3 L33: 7.0367 L12: -0.9645 REMARK 3 L13: -1.2613 L23: 2.2018 REMARK 3 S TENSOR REMARK 3 S11: -0.0573 S12: 0.4410 S13: -0.4589 REMARK 3 S21: 0.1936 S22: -0.2771 S23: 0.3583 REMARK 3 S31: 0.2499 S32: -0.8539 S33: 0.3011 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 24 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.0832 -1.8801 5.3632 REMARK 3 T TENSOR REMARK 3 T11: 0.4169 T22: 0.4343 REMARK 3 T33: 0.3272 T12: 0.0098 REMARK 3 T13: 0.0154 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 2.6298 L22: 2.7478 REMARK 3 L33: 2.7111 L12: -0.8174 REMARK 3 L13: 0.5861 L23: 1.8208 REMARK 3 S TENSOR REMARK 3 S11: 0.1017 S12: -0.0565 S13: -0.4975 REMARK 3 S21: 0.3780 S22: 0.0040 S23: 0.2354 REMARK 3 S31: 0.1586 S32: -0.3185 S33: 0.0645 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 65 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.5142 3.0963 -0.0099 REMARK 3 T TENSOR REMARK 3 T11: 0.3817 T22: 0.3161 REMARK 3 T33: 0.3292 T12: -0.0478 REMARK 3 T13: -0.0437 T23: 0.0429 REMARK 3 L TENSOR REMARK 3 L11: 4.7348 L22: 3.9452 REMARK 3 L33: 2.9091 L12: -0.6520 REMARK 3 L13: 0.5053 L23: -0.4026 REMARK 3 S TENSOR REMARK 3 S11: -0.1641 S12: 0.1196 S13: 0.0569 REMARK 3 S21: 0.1077 S22: -0.1735 S23: -0.4535 REMARK 3 S31: -0.3296 S32: 0.7643 S33: 0.2376 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 123 THROUGH 142 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.3984 -4.7210 -11.6672 REMARK 3 T TENSOR REMARK 3 T11: 0.5644 T22: 0.6907 REMARK 3 T33: 0.5727 T12: 0.0300 REMARK 3 T13: -0.0371 T23: -0.0872 REMARK 3 L TENSOR REMARK 3 L11: 4.9055 L22: 6.0333 REMARK 3 L33: 6.5496 L12: -2.6178 REMARK 3 L13: -2.0649 L23: -0.4254 REMARK 3 S TENSOR REMARK 3 S11: 0.6713 S12: 0.8095 S13: -0.1385 REMARK 3 S21: -0.3239 S22: -0.0318 S23: -0.2269 REMARK 3 S31: 1.1958 S32: 0.6752 S33: -0.5695 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 143 THROUGH 177 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.2600 0.3502 7.3117 REMARK 3 T TENSOR REMARK 3 T11: 0.4301 T22: 0.3225 REMARK 3 T33: 0.2961 T12: 0.0460 REMARK 3 T13: -0.0170 T23: 0.0276 REMARK 3 L TENSOR REMARK 3 L11: 4.4656 L22: 2.8160 REMARK 3 L33: 5.0918 L12: -0.8846 REMARK 3 L13: -0.1243 L23: 2.5426 REMARK 3 S TENSOR REMARK 3 S11: -0.2522 S12: -0.4199 S13: -0.1876 REMARK 3 S21: 0.4459 S22: 0.1105 S23: 0.4029 REMARK 3 S31: -0.1590 S32: -0.4398 S33: 0.0578 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 4 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.3213 -8.8739 -10.9433 REMARK 3 T TENSOR REMARK 3 T11: 0.4484 T22: 0.5698 REMARK 3 T33: 0.5119 T12: -0.0275 REMARK 3 T13: 0.0404 T23: -0.0801 REMARK 3 L TENSOR REMARK 3 L11: 5.9230 L22: 9.5153 REMARK 3 L33: 3.9316 L12: -1.4858 REMARK 3 L13: 0.9915 L23: 0.0994 REMARK 3 S TENSOR REMARK 3 S11: -0.3131 S12: -0.6387 S13: 1.0666 REMARK 3 S21: 2.2454 S22: -0.0318 S23: -0.9843 REMARK 3 S31: -0.3715 S32: -0.4887 S33: 0.0164 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 24 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.1548 -11.2211 -19.5898 REMARK 3 T TENSOR REMARK 3 T11: 0.4221 T22: 0.5533 REMARK 3 T33: 0.3395 T12: 0.0024 REMARK 3 T13: 0.0387 T23: -0.0385 REMARK 3 L TENSOR REMARK 3 L11: 3.8826 L22: 3.8408 REMARK 3 L33: 2.5815 L12: 0.9027 REMARK 3 L13: 1.2499 L23: 0.7472 REMARK 3 S TENSOR REMARK 3 S11: 0.0740 S12: -0.2069 S13: 0.1479 REMARK 3 S21: 0.0684 S22: -0.2358 S23: -0.0965 REMARK 3 S31: 0.1102 S32: -0.0698 S33: 0.0468 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 53 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.0509 -6.3720 -34.0022 REMARK 3 T TENSOR REMARK 3 T11: 0.8818 T22: 0.4631 REMARK 3 T33: 0.5061 T12: -0.1349 REMARK 3 T13: 0.0861 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 8.6624 L22: 6.1714 REMARK 3 L33: 7.6573 L12: -0.3367 REMARK 3 L13: 0.8791 L23: -0.0859 REMARK 3 S TENSOR REMARK 3 S11: -0.2239 S12: 0.8760 S13: -0.2324 REMARK 3 S21: -1.8387 S22: -0.1850 S23: -0.6682 REMARK 3 S31: 0.0417 S32: 1.3185 S33: 0.8221 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 65 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.7373 -18.3944 -28.1728 REMARK 3 T TENSOR REMARK 3 T11: 0.5545 T22: 0.3736 REMARK 3 T33: 0.4184 T12: -0.1202 REMARK 3 T13: 0.0785 T23: -0.0845 REMARK 3 L TENSOR REMARK 3 L11: 2.3666 L22: 3.6612 REMARK 3 L33: 5.8821 L12: -0.9596 REMARK 3 L13: -0.5533 L23: -1.3615 REMARK 3 S TENSOR REMARK 3 S11: -0.0758 S12: 0.3288 S13: -0.3097 REMARK 3 S21: -0.8670 S22: 0.3329 S23: -0.2973 REMARK 3 S31: 0.6431 S32: -0.6060 S33: -0.2657 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 87 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.9155 -27.4828 -11.5123 REMARK 3 T TENSOR REMARK 3 T11: 0.6276 T22: 0.9512 REMARK 3 T33: 0.6664 T12: 0.0431 REMARK 3 T13: 0.0319 T23: 0.0276 REMARK 3 L TENSOR REMARK 3 L11: 8.9600 L22: 5.0383 REMARK 3 L33: 5.2042 L12: -3.4069 REMARK 3 L13: 1.0544 L23: 2.6361 REMARK 3 S TENSOR REMARK 3 S11: -0.5801 S12: 1.9084 S13: -0.2119 REMARK 3 S21: 0.6543 S22: 0.4239 S23: -1.0736 REMARK 3 S31: 1.7102 S32: 0.8428 S33: 0.1219 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 97 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2701 -23.1937 -27.3499 REMARK 3 T TENSOR REMARK 3 T11: 0.6922 T22: 0.6564 REMARK 3 T33: 0.8422 T12: -0.0545 REMARK 3 T13: 0.1887 T23: -0.1243 REMARK 3 L TENSOR REMARK 3 L11: 6.3310 L22: 5.4978 REMARK 3 L33: 5.2619 L12: -0.5001 REMARK 3 L13: -1.7424 L23: -1.3311 REMARK 3 S TENSOR REMARK 3 S11: -0.0341 S12: -0.0650 S13: -0.9066 REMARK 3 S21: -1.3190 S22: -0.0844 S23: -1.0776 REMARK 3 S31: 0.6848 S32: 1.0736 S33: 0.1487 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 107 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.1951 -14.0538 -24.9898 REMARK 3 T TENSOR REMARK 3 T11: 0.4588 T22: 0.5333 REMARK 3 T33: 0.7487 T12: -0.0689 REMARK 3 T13: 0.1328 T23: -0.0995 REMARK 3 L TENSOR REMARK 3 L11: 1.7368 L22: 1.1326 REMARK 3 L33: 3.5390 L12: -0.5252 REMARK 3 L13: -0.9954 L23: -0.4966 REMARK 3 S TENSOR REMARK 3 S11: 0.0038 S12: 0.0008 S13: 0.1978 REMARK 3 S21: -0.0309 S22: 0.2082 S23: -0.6232 REMARK 3 S31: 0.2597 S32: 1.1516 S33: -0.2912 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 123 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4353 -16.4839 -17.9843 REMARK 3 T TENSOR REMARK 3 T11: 0.5157 T22: 1.0210 REMARK 3 T33: 0.6997 T12: -0.0385 REMARK 3 T13: -0.0229 T23: -0.1212 REMARK 3 L TENSOR REMARK 3 L11: 3.3916 L22: 0.2849 REMARK 3 L33: 0.9019 L12: -0.8963 REMARK 3 L13: -1.6917 L23: 0.5279 REMARK 3 S TENSOR REMARK 3 S11: 0.2419 S12: -0.7108 S13: -0.3158 REMARK 3 S21: -0.4577 S22: 0.4291 S23: -0.4282 REMARK 3 S31: -0.5605 S32: 0.9909 S33: -0.3385 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 134 THROUGH 142 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.9011 -17.8882 -7.0336 REMARK 3 T TENSOR REMARK 3 T11: 0.5880 T22: 1.1831 REMARK 3 T33: 0.7254 T12: 0.0543 REMARK 3 T13: -0.1283 T23: -0.1005 REMARK 3 L TENSOR REMARK 3 L11: 2.7598 L22: 1.5780 REMARK 3 L33: 0.9298 L12: -1.9215 REMARK 3 L13: -1.4229 L23: 1.1982 REMARK 3 S TENSOR REMARK 3 S11: -0.5200 S12: -0.1130 S13: 0.0476 REMARK 3 S21: 0.5531 S22: 0.4911 S23: -0.5562 REMARK 3 S31: 0.5339 S32: 0.8358 S33: -0.1432 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 143 THROUGH 165 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.1634 -14.0888 -21.7553 REMARK 3 T TENSOR REMARK 3 T11: 0.2875 T22: 0.2985 REMARK 3 T33: 0.2787 T12: -0.0026 REMARK 3 T13: 0.0415 T23: 0.0128 REMARK 3 L TENSOR REMARK 3 L11: 4.1461 L22: 4.6696 REMARK 3 L33: 3.8580 L12: 0.4623 REMARK 3 L13: -1.8413 L23: 1.7090 REMARK 3 S TENSOR REMARK 3 S11: 0.0665 S12: -0.2286 S13: -0.1612 REMARK 3 S21: 0.1785 S22: 0.1847 S23: 0.2613 REMARK 3 S31: 0.4168 S32: -0.0528 S33: -0.0952 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7UY2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1000265091. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9201 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12531 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.510 REMARK 200 RESOLUTION RANGE LOW (A) : 42.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 11.80 REMARK 200 R MERGE (I) : 0.19200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4DBG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.06 M DIVALENTS (0.3M MAGNESIUM REMARK 280 CHLORIDE HEXAHYDRATE; 0.3M CALCIUM CHLORIDE DIHYDRATE), 0.1 M REMARK 280 BUFFER SYSTEM 1 (IMIDAZOLE; MES MONOHYDRATE (ACID) PH 6.5), 37.5% REMARK 280 PRECIPITANT MIX 4 (25% V/V MPD; 25% PEG 1000; 25% W/V PEG 3350), REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.04000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 178.08000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 133.56000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 222.60000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.52000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 LEU A 178 REMARK 465 GLU A 179 REMARK 465 GLY B -4 REMARK 465 PRO B -3 REMARK 465 LEU B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 GLY B 3 REMARK 465 LEU B 178 REMARK 465 GLU B 179 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 4 CG CD OE1 OE2 REMARK 470 GLU A 5 CG CD OE1 OE2 REMARK 470 GLU A 6 CG CD OE1 OE2 REMARK 470 ARG A 93 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 94 49.96 -107.44 REMARK 500 THR A 108 -75.06 -116.62 REMARK 500 GLN B 90 58.71 -91.61 REMARK 500 TYR B 94 54.08 -93.18 REMARK 500 THR B 108 -75.84 -131.49 REMARK 500 ARG B 170 54.50 -115.66 REMARK 500 THR D 5 119.46 -39.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7UWI RELATED DB: PDB REMARK 900 A RELATED STRUCTURE TO BE PUBLISHED IN THE SAME PAPER REMARK 900 RELATED ID: 7UWO RELATED DB: PDB REMARK 900 A RELATED STRUCTURE TO BE PUBLISHED IN THE SAME PAPER DBREF 7UY2 A 1 179 UNP Q96EP0 RNF31_HUMAN 1 179 DBREF 7UY2 B 1 179 UNP Q96EP0 RNF31_HUMAN 1 179 DBREF 7UY2 C 4 17 PDB 7UY2 7UY2 4 17 DBREF 7UY2 D 4 17 PDB 7UY2 7UY2 4 17 SEQADV 7UY2 GLY A -4 UNP Q96EP0 EXPRESSION TAG SEQADV 7UY2 PRO A -3 UNP Q96EP0 EXPRESSION TAG SEQADV 7UY2 LEU A -2 UNP Q96EP0 EXPRESSION TAG SEQADV 7UY2 GLY A -1 UNP Q96EP0 EXPRESSION TAG SEQADV 7UY2 SER A 0 UNP Q96EP0 EXPRESSION TAG SEQADV 7UY2 GLY B -4 UNP Q96EP0 EXPRESSION TAG SEQADV 7UY2 PRO B -3 UNP Q96EP0 EXPRESSION TAG SEQADV 7UY2 LEU B -2 UNP Q96EP0 EXPRESSION TAG SEQADV 7UY2 GLY B -1 UNP Q96EP0 EXPRESSION TAG SEQADV 7UY2 SER B 0 UNP Q96EP0 EXPRESSION TAG SEQRES 1 A 184 GLY PRO LEU GLY SER MET PRO GLY GLU GLU GLU GLU ARG SEQRES 2 A 184 ALA PHE LEU VAL ALA ARG GLU GLU LEU ALA SER ALA LEU SEQRES 3 A 184 ARG ARG ASP SER GLY GLN ALA PHE SER LEU GLU GLN LEU SEQRES 4 A 184 ARG PRO LEU LEU ALA SER SER LEU PRO LEU ALA ALA ARG SEQRES 5 A 184 TYR LEU GLN LEU ASP ALA ALA ARG LEU VAL ARG CYS ASN SEQRES 6 A 184 ALA HIS GLY GLU PRO ARG ASN TYR LEU ASN THR LEU SER SEQRES 7 A 184 THR ALA LEU ASN ILE LEU GLU LYS TYR GLY ARG ASN LEU SEQRES 8 A 184 LEU SER PRO GLN ARG PRO ARG TYR TRP ARG GLY VAL LYS SEQRES 9 A 184 PHE ASN ASN PRO VAL PHE ARG SER THR VAL ASP ALA VAL SEQRES 10 A 184 GLN GLY GLY ARG ASP VAL LEU ARG LEU TYR GLY TYR THR SEQRES 11 A 184 GLU GLU GLN PRO ASP GLY LEU SER PHE PRO GLU GLY GLN SEQRES 12 A 184 GLU GLU PRO ASP GLU HIS GLN VAL ALA THR VAL THR LEU SEQRES 13 A 184 GLU VAL LEU LEU LEU ARG THR GLU LEU SER LEU LEU LEU SEQRES 14 A 184 GLN ASN THR HIS PRO ARG GLN GLN ALA LEU GLU GLN LEU SEQRES 15 A 184 LEU GLU SEQRES 1 B 184 GLY PRO LEU GLY SER MET PRO GLY GLU GLU GLU GLU ARG SEQRES 2 B 184 ALA PHE LEU VAL ALA ARG GLU GLU LEU ALA SER ALA LEU SEQRES 3 B 184 ARG ARG ASP SER GLY GLN ALA PHE SER LEU GLU GLN LEU SEQRES 4 B 184 ARG PRO LEU LEU ALA SER SER LEU PRO LEU ALA ALA ARG SEQRES 5 B 184 TYR LEU GLN LEU ASP ALA ALA ARG LEU VAL ARG CYS ASN SEQRES 6 B 184 ALA HIS GLY GLU PRO ARG ASN TYR LEU ASN THR LEU SER SEQRES 7 B 184 THR ALA LEU ASN ILE LEU GLU LYS TYR GLY ARG ASN LEU SEQRES 8 B 184 LEU SER PRO GLN ARG PRO ARG TYR TRP ARG GLY VAL LYS SEQRES 9 B 184 PHE ASN ASN PRO VAL PHE ARG SER THR VAL ASP ALA VAL SEQRES 10 B 184 GLN GLY GLY ARG ASP VAL LEU ARG LEU TYR GLY TYR THR SEQRES 11 B 184 GLU GLU GLN PRO ASP GLY LEU SER PHE PRO GLU GLY GLN SEQRES 12 B 184 GLU GLU PRO ASP GLU HIS GLN VAL ALA THR VAL THR LEU SEQRES 13 B 184 GLU VAL LEU LEU LEU ARG THR GLU LEU SER LEU LEU LEU SEQRES 14 B 184 GLN ASN THR HIS PRO ARG GLN GLN ALA LEU GLU GLN LEU SEQRES 15 B 184 LEU GLU SEQRES 1 C 14 PHE THR ASP CYS GLN LEU ALA ALA ALA VAL CYS MET THR SEQRES 2 C 14 TYR SEQRES 1 D 14 PHE THR ASP CYS GLN LEU ALA ALA ALA VAL CYS MET THR SEQRES 2 D 14 TYR HET NH2 C 101 1 HET WHL C 102 14 HET NH2 D 101 1 HET WHL D 102 14 HETNAM NH2 AMINO GROUP HETNAM WHL N,N'-(1,4-PHENYLENE)DIACETAMIDE FORMUL 5 NH2 2(H2 N) FORMUL 6 WHL 2(C10 H12 N2 O2) FORMUL 9 HOH *15(H2 O) HELIX 1 AA1 GLY A 3 ASP A 24 1 22 HELIX 2 AA2 LEU A 34 ALA A 39 1 6 HELIX 3 AA3 PRO A 43 TYR A 48 1 6 HELIX 4 AA4 ASP A 52 CYS A 59 1 8 HELIX 5 AA5 GLU A 64 SER A 88 1 25 HELIX 6 AA6 ASN A 102 THR A 108 1 7 HELIX 7 AA7 VAL A 109 VAL A 112 5 4 HELIX 8 AA8 GLY A 114 GLY A 123 1 10 HELIX 9 AA9 ASP A 142 GLN A 165 1 24 HELIX 10 AB1 ARG A 170 GLN A 176 1 7 HELIX 11 AB2 GLU B 5 ASP B 24 1 20 HELIX 12 AB3 LEU B 34 ALA B 39 1 6 HELIX 13 AB4 PRO B 43 TYR B 48 1 6 HELIX 14 AB5 ASP B 52 CYS B 59 1 8 HELIX 15 AB6 GLU B 64 SER B 88 1 25 HELIX 16 AB7 ASN B 102 SER B 107 1 6 HELIX 17 AB8 GLY B 114 GLY B 123 1 10 HELIX 18 AB9 ASP B 142 GLN B 165 1 24 HELIX 19 AC1 ARG B 170 GLN B 176 1 7 HELIX 20 AC2 THR C 5 TYR C 17 1 13 HELIX 21 AC3 THR D 5 THR D 16 1 12 SHEET 1 AA1 3 GLY A 97 LYS A 99 0 SHEET 2 AA1 3 GLY A 131 SER A 133 -1 O LEU A 132 N VAL A 98 SHEET 3 AA1 3 GLU A 126 GLU A 127 -1 N GLU A 126 O SER A 133 SHEET 1 AA2 3 GLY B 97 LYS B 99 0 SHEET 2 AA2 3 GLY B 131 SER B 133 -1 O LEU B 132 N VAL B 98 SHEET 3 AA2 3 GLU B 126 GLU B 127 -1 N GLU B 126 O SER B 133 SSBOND 1 CYS A 59 CYS B 59 1555 6555 2.03 LINK SG CYS C 7 CK WHL C 102 1555 1555 1.86 LINK SG CYS C 14 CH WHL C 102 1555 1555 1.86 LINK C TYR C 17 N NH2 C 101 1555 1555 1.43 LINK SG CYS D 7 CK WHL D 102 1555 1555 1.86 LINK SG CYS D 14 CH WHL D 102 1555 1555 1.85 LINK C TYR D 17 N NH2 D 101 1555 1555 1.43 CRYST1 49.420 49.420 267.120 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020235 0.011683 0.000000 0.00000 SCALE2 0.000000 0.023365 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003744 0.00000