data_7V4C # _entry.id 7V4C # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7V4C pdb_00007v4c 10.2210/pdb7v4c/pdb WWPDB D_1300023870 ? ? EMDB EMD-31707 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-08-17 2 'Structure model' 1 1 2024-06-12 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7V4C _pdbx_database_status.recvd_initial_deposition_date 2021-08-12 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Heparin-induced alpha-synuclein fibrils polymorph 4' _pdbx_database_related.db_id EMD-31707 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email taoyouqi@sjtu.edu.cn _pdbx_contact_author.name_first Dan _pdbx_contact_author.name_last Li _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-1609-1539 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Tao, Y.Q.' 1 ? 'Sun, Y.P.' 2 ? 'Liu, C.' 3 ? 'Li, D.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Heparin-induced alpha-synuclein fibrils polymorph 4' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tao, Y.Q.' 1 ? primary 'Sun, Y.P.' 2 ? primary 'Liu, C.' 3 ? primary 'Li, D.' 4 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description Alpha-synuclein _entity.formula_weight 14476.108 _entity.pdbx_number_of_molecules 3 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Non-A beta component of AD amyloid,Non-A4 component of amyloid precursor,NACP' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQK TVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDPDNEAYEMPSEEGYQDYEPEA ; _entity_poly.pdbx_seq_one_letter_code_can ;MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQK TVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDPDNEAYEMPSEEGYQDYEPEA ; _entity_poly.pdbx_strand_id F,A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASP n 1 3 VAL n 1 4 PHE n 1 5 MET n 1 6 LYS n 1 7 GLY n 1 8 LEU n 1 9 SER n 1 10 LYS n 1 11 ALA n 1 12 LYS n 1 13 GLU n 1 14 GLY n 1 15 VAL n 1 16 VAL n 1 17 ALA n 1 18 ALA n 1 19 ALA n 1 20 GLU n 1 21 LYS n 1 22 THR n 1 23 LYS n 1 24 GLN n 1 25 GLY n 1 26 VAL n 1 27 ALA n 1 28 GLU n 1 29 ALA n 1 30 ALA n 1 31 GLY n 1 32 LYS n 1 33 THR n 1 34 LYS n 1 35 GLU n 1 36 GLY n 1 37 VAL n 1 38 LEU n 1 39 TYR n 1 40 VAL n 1 41 GLY n 1 42 SER n 1 43 LYS n 1 44 THR n 1 45 LYS n 1 46 GLU n 1 47 GLY n 1 48 VAL n 1 49 VAL n 1 50 HIS n 1 51 GLY n 1 52 VAL n 1 53 ALA n 1 54 THR n 1 55 VAL n 1 56 ALA n 1 57 GLU n 1 58 LYS n 1 59 THR n 1 60 LYS n 1 61 GLU n 1 62 GLN n 1 63 VAL n 1 64 THR n 1 65 ASN n 1 66 VAL n 1 67 GLY n 1 68 GLY n 1 69 ALA n 1 70 VAL n 1 71 VAL n 1 72 THR n 1 73 GLY n 1 74 VAL n 1 75 THR n 1 76 ALA n 1 77 VAL n 1 78 ALA n 1 79 GLN n 1 80 LYS n 1 81 THR n 1 82 VAL n 1 83 GLU n 1 84 GLY n 1 85 ALA n 1 86 GLY n 1 87 SER n 1 88 ILE n 1 89 ALA n 1 90 ALA n 1 91 ALA n 1 92 THR n 1 93 GLY n 1 94 PHE n 1 95 VAL n 1 96 LYS n 1 97 LYS n 1 98 ASP n 1 99 GLN n 1 100 LEU n 1 101 GLY n 1 102 LYS n 1 103 ASN n 1 104 GLU n 1 105 GLU n 1 106 GLY n 1 107 ALA n 1 108 PRO n 1 109 GLN n 1 110 GLU n 1 111 GLY n 1 112 ILE n 1 113 LEU n 1 114 GLU n 1 115 ASP n 1 116 MET n 1 117 PRO n 1 118 VAL n 1 119 ASP n 1 120 PRO n 1 121 ASP n 1 122 ASN n 1 123 GLU n 1 124 ALA n 1 125 TYR n 1 126 GLU n 1 127 MET n 1 128 PRO n 1 129 SER n 1 130 GLU n 1 131 GLU n 1 132 GLY n 1 133 TYR n 1 134 GLN n 1 135 ASP n 1 136 TYR n 1 137 GLU n 1 138 PRO n 1 139 GLU n 1 140 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 140 _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'SNCA, NACP, PARK1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? F . n A 1 2 ASP 2 2 ? ? ? F . n A 1 3 VAL 3 3 ? ? ? F . n A 1 4 PHE 4 4 ? ? ? F . n A 1 5 MET 5 5 ? ? ? F . n A 1 6 LYS 6 6 ? ? ? F . n A 1 7 GLY 7 7 ? ? ? F . n A 1 8 LEU 8 8 ? ? ? F . n A 1 9 SER 9 9 ? ? ? F . n A 1 10 LYS 10 10 ? ? ? F . n A 1 11 ALA 11 11 ? ? ? F . n A 1 12 LYS 12 12 ? ? ? F . n A 1 13 GLU 13 13 ? ? ? F . n A 1 14 GLY 14 14 ? ? ? F . n A 1 15 VAL 15 15 ? ? ? F . n A 1 16 VAL 16 16 ? ? ? F . n A 1 17 ALA 17 17 ? ? ? F . n A 1 18 ALA 18 18 ? ? ? F . n A 1 19 ALA 19 19 ? ? ? F . n A 1 20 GLU 20 20 ? ? ? F . n A 1 21 LYS 21 21 ? ? ? F . n A 1 22 THR 22 22 ? ? ? F . n A 1 23 LYS 23 23 ? ? ? F . n A 1 24 GLN 24 24 ? ? ? F . n A 1 25 GLY 25 25 ? ? ? F . n A 1 26 VAL 26 26 ? ? ? F . n A 1 27 ALA 27 27 ? ? ? F . n A 1 28 GLU 28 28 ? ? ? F . n A 1 29 ALA 29 29 ? ? ? F . n A 1 30 ALA 30 30 ? ? ? F . n A 1 31 GLY 31 31 ? ? ? F . n A 1 32 LYS 32 32 ? ? ? F . n A 1 33 THR 33 33 ? ? ? F . n A 1 34 LYS 34 34 ? ? ? F . n A 1 35 GLU 35 35 ? ? ? F . n A 1 36 GLY 36 36 ? ? ? F . n A 1 37 VAL 37 37 37 VAL VAL F . n A 1 38 LEU 38 38 38 LEU LEU F . n A 1 39 TYR 39 39 39 TYR TYR F . n A 1 40 VAL 40 40 40 VAL VAL F . n A 1 41 GLY 41 41 41 GLY GLY F . n A 1 42 SER 42 42 42 SER SER F . n A 1 43 LYS 43 43 43 LYS LYS F . n A 1 44 THR 44 44 44 THR THR F . n A 1 45 LYS 45 45 45 LYS LYS F . n A 1 46 GLU 46 46 46 GLU GLU F . n A 1 47 GLY 47 47 47 GLY GLY F . n A 1 48 VAL 48 48 48 VAL VAL F . n A 1 49 VAL 49 49 49 VAL VAL F . n A 1 50 HIS 50 50 50 HIS HIS F . n A 1 51 GLY 51 51 51 GLY GLY F . n A 1 52 VAL 52 52 52 VAL VAL F . n A 1 53 ALA 53 53 53 ALA ALA F . n A 1 54 THR 54 54 54 THR THR F . n A 1 55 VAL 55 55 55 VAL VAL F . n A 1 56 ALA 56 56 56 ALA ALA F . n A 1 57 GLU 57 57 57 GLU GLU F . n A 1 58 LYS 58 58 58 LYS LYS F . n A 1 59 THR 59 59 59 THR THR F . n A 1 60 LYS 60 60 60 LYS LYS F . n A 1 61 GLU 61 61 61 GLU GLU F . n A 1 62 GLN 62 62 62 GLN GLN F . n A 1 63 VAL 63 63 63 VAL VAL F . n A 1 64 THR 64 64 64 THR THR F . n A 1 65 ASN 65 65 65 ASN ASN F . n A 1 66 VAL 66 66 66 VAL VAL F . n A 1 67 GLY 67 67 67 GLY GLY F . n A 1 68 GLY 68 68 68 GLY GLY F . n A 1 69 ALA 69 69 69 ALA ALA F . n A 1 70 VAL 70 70 70 VAL VAL F . n A 1 71 VAL 71 71 71 VAL VAL F . n A 1 72 THR 72 72 72 THR THR F . n A 1 73 GLY 73 73 73 GLY GLY F . n A 1 74 VAL 74 74 74 VAL VAL F . n A 1 75 THR 75 75 75 THR THR F . n A 1 76 ALA 76 76 76 ALA ALA F . n A 1 77 VAL 77 77 77 VAL VAL F . n A 1 78 ALA 78 78 78 ALA ALA F . n A 1 79 GLN 79 79 79 GLN GLN F . n A 1 80 LYS 80 80 80 LYS LYS F . n A 1 81 THR 81 81 81 THR THR F . n A 1 82 VAL 82 82 82 VAL VAL F . n A 1 83 GLU 83 83 83 GLU GLU F . n A 1 84 GLY 84 84 84 GLY GLY F . n A 1 85 ALA 85 85 85 ALA ALA F . n A 1 86 GLY 86 86 86 GLY GLY F . n A 1 87 SER 87 87 87 SER SER F . n A 1 88 ILE 88 88 88 ILE ILE F . n A 1 89 ALA 89 89 89 ALA ALA F . n A 1 90 ALA 90 90 90 ALA ALA F . n A 1 91 ALA 91 91 91 ALA ALA F . n A 1 92 THR 92 92 92 THR THR F . n A 1 93 GLY 93 93 93 GLY GLY F . n A 1 94 PHE 94 94 94 PHE PHE F . n A 1 95 VAL 95 95 95 VAL VAL F . n A 1 96 LYS 96 96 96 LYS LYS F . n A 1 97 LYS 97 97 97 LYS LYS F . n A 1 98 ASP 98 98 98 ASP ASP F . n A 1 99 GLN 99 99 ? ? ? F . n A 1 100 LEU 100 100 ? ? ? F . n A 1 101 GLY 101 101 ? ? ? F . n A 1 102 LYS 102 102 ? ? ? F . n A 1 103 ASN 103 103 ? ? ? F . n A 1 104 GLU 104 104 ? ? ? F . n A 1 105 GLU 105 105 ? ? ? F . n A 1 106 GLY 106 106 ? ? ? F . n A 1 107 ALA 107 107 ? ? ? F . n A 1 108 PRO 108 108 ? ? ? F . n A 1 109 GLN 109 109 ? ? ? F . n A 1 110 GLU 110 110 ? ? ? F . n A 1 111 GLY 111 111 ? ? ? F . n A 1 112 ILE 112 112 ? ? ? F . n A 1 113 LEU 113 113 ? ? ? F . n A 1 114 GLU 114 114 ? ? ? F . n A 1 115 ASP 115 115 ? ? ? F . n A 1 116 MET 116 116 ? ? ? F . n A 1 117 PRO 117 117 ? ? ? F . n A 1 118 VAL 118 118 ? ? ? F . n A 1 119 ASP 119 119 ? ? ? F . n A 1 120 PRO 120 120 ? ? ? F . n A 1 121 ASP 121 121 ? ? ? F . n A 1 122 ASN 122 122 ? ? ? F . n A 1 123 GLU 123 123 ? ? ? F . n A 1 124 ALA 124 124 ? ? ? F . n A 1 125 TYR 125 125 ? ? ? F . n A 1 126 GLU 126 126 ? ? ? F . n A 1 127 MET 127 127 ? ? ? F . n A 1 128 PRO 128 128 ? ? ? F . n A 1 129 SER 129 129 ? ? ? F . n A 1 130 GLU 130 130 ? ? ? F . n A 1 131 GLU 131 131 ? ? ? F . n A 1 132 GLY 132 132 ? ? ? F . n A 1 133 TYR 133 133 ? ? ? F . n A 1 134 GLN 134 134 ? ? ? F . n A 1 135 ASP 135 135 ? ? ? F . n A 1 136 TYR 136 136 ? ? ? F . n A 1 137 GLU 137 137 ? ? ? F . n A 1 138 PRO 138 138 ? ? ? F . n A 1 139 GLU 139 139 ? ? ? F . n A 1 140 ALA 140 140 ? ? ? F . n B 1 1 MET 1 1 ? ? ? A . n B 1 2 ASP 2 2 ? ? ? A . n B 1 3 VAL 3 3 ? ? ? A . n B 1 4 PHE 4 4 ? ? ? A . n B 1 5 MET 5 5 ? ? ? A . n B 1 6 LYS 6 6 ? ? ? A . n B 1 7 GLY 7 7 ? ? ? A . n B 1 8 LEU 8 8 ? ? ? A . n B 1 9 SER 9 9 ? ? ? A . n B 1 10 LYS 10 10 ? ? ? A . n B 1 11 ALA 11 11 ? ? ? A . n B 1 12 LYS 12 12 ? ? ? A . n B 1 13 GLU 13 13 ? ? ? A . n B 1 14 GLY 14 14 ? ? ? A . n B 1 15 VAL 15 15 ? ? ? A . n B 1 16 VAL 16 16 ? ? ? A . n B 1 17 ALA 17 17 ? ? ? A . n B 1 18 ALA 18 18 ? ? ? A . n B 1 19 ALA 19 19 ? ? ? A . n B 1 20 GLU 20 20 ? ? ? A . n B 1 21 LYS 21 21 ? ? ? A . n B 1 22 THR 22 22 ? ? ? A . n B 1 23 LYS 23 23 ? ? ? A . n B 1 24 GLN 24 24 ? ? ? A . n B 1 25 GLY 25 25 ? ? ? A . n B 1 26 VAL 26 26 ? ? ? A . n B 1 27 ALA 27 27 ? ? ? A . n B 1 28 GLU 28 28 ? ? ? A . n B 1 29 ALA 29 29 ? ? ? A . n B 1 30 ALA 30 30 ? ? ? A . n B 1 31 GLY 31 31 ? ? ? A . n B 1 32 LYS 32 32 ? ? ? A . n B 1 33 THR 33 33 ? ? ? A . n B 1 34 LYS 34 34 ? ? ? A . n B 1 35 GLU 35 35 ? ? ? A . n B 1 36 GLY 36 36 ? ? ? A . n B 1 37 VAL 37 37 37 VAL VAL A . n B 1 38 LEU 38 38 38 LEU LEU A . n B 1 39 TYR 39 39 39 TYR TYR A . n B 1 40 VAL 40 40 40 VAL VAL A . n B 1 41 GLY 41 41 41 GLY GLY A . n B 1 42 SER 42 42 42 SER SER A . n B 1 43 LYS 43 43 43 LYS LYS A . n B 1 44 THR 44 44 44 THR THR A . n B 1 45 LYS 45 45 45 LYS LYS A . n B 1 46 GLU 46 46 46 GLU GLU A . n B 1 47 GLY 47 47 47 GLY GLY A . n B 1 48 VAL 48 48 48 VAL VAL A . n B 1 49 VAL 49 49 49 VAL VAL A . n B 1 50 HIS 50 50 50 HIS HIS A . n B 1 51 GLY 51 51 51 GLY GLY A . n B 1 52 VAL 52 52 52 VAL VAL A . n B 1 53 ALA 53 53 53 ALA ALA A . n B 1 54 THR 54 54 54 THR THR A . n B 1 55 VAL 55 55 55 VAL VAL A . n B 1 56 ALA 56 56 56 ALA ALA A . n B 1 57 GLU 57 57 57 GLU GLU A . n B 1 58 LYS 58 58 58 LYS LYS A . n B 1 59 THR 59 59 59 THR THR A . n B 1 60 LYS 60 60 60 LYS LYS A . n B 1 61 GLU 61 61 61 GLU GLU A . n B 1 62 GLN 62 62 62 GLN GLN A . n B 1 63 VAL 63 63 63 VAL VAL A . n B 1 64 THR 64 64 64 THR THR A . n B 1 65 ASN 65 65 65 ASN ASN A . n B 1 66 VAL 66 66 66 VAL VAL A . n B 1 67 GLY 67 67 67 GLY GLY A . n B 1 68 GLY 68 68 68 GLY GLY A . n B 1 69 ALA 69 69 69 ALA ALA A . n B 1 70 VAL 70 70 70 VAL VAL A . n B 1 71 VAL 71 71 71 VAL VAL A . n B 1 72 THR 72 72 72 THR THR A . n B 1 73 GLY 73 73 73 GLY GLY A . n B 1 74 VAL 74 74 74 VAL VAL A . n B 1 75 THR 75 75 75 THR THR A . n B 1 76 ALA 76 76 76 ALA ALA A . n B 1 77 VAL 77 77 77 VAL VAL A . n B 1 78 ALA 78 78 78 ALA ALA A . n B 1 79 GLN 79 79 79 GLN GLN A . n B 1 80 LYS 80 80 80 LYS LYS A . n B 1 81 THR 81 81 81 THR THR A . n B 1 82 VAL 82 82 82 VAL VAL A . n B 1 83 GLU 83 83 83 GLU GLU A . n B 1 84 GLY 84 84 84 GLY GLY A . n B 1 85 ALA 85 85 85 ALA ALA A . n B 1 86 GLY 86 86 86 GLY GLY A . n B 1 87 SER 87 87 87 SER SER A . n B 1 88 ILE 88 88 88 ILE ILE A . n B 1 89 ALA 89 89 89 ALA ALA A . n B 1 90 ALA 90 90 90 ALA ALA A . n B 1 91 ALA 91 91 91 ALA ALA A . n B 1 92 THR 92 92 92 THR THR A . n B 1 93 GLY 93 93 93 GLY GLY A . n B 1 94 PHE 94 94 94 PHE PHE A . n B 1 95 VAL 95 95 95 VAL VAL A . n B 1 96 LYS 96 96 96 LYS LYS A . n B 1 97 LYS 97 97 97 LYS LYS A . n B 1 98 ASP 98 98 98 ASP ASP A . n B 1 99 GLN 99 99 ? ? ? A . n B 1 100 LEU 100 100 ? ? ? A . n B 1 101 GLY 101 101 ? ? ? A . n B 1 102 LYS 102 102 ? ? ? A . n B 1 103 ASN 103 103 ? ? ? A . n B 1 104 GLU 104 104 ? ? ? A . n B 1 105 GLU 105 105 ? ? ? A . n B 1 106 GLY 106 106 ? ? ? A . n B 1 107 ALA 107 107 ? ? ? A . n B 1 108 PRO 108 108 ? ? ? A . n B 1 109 GLN 109 109 ? ? ? A . n B 1 110 GLU 110 110 ? ? ? A . n B 1 111 GLY 111 111 ? ? ? A . n B 1 112 ILE 112 112 ? ? ? A . n B 1 113 LEU 113 113 ? ? ? A . n B 1 114 GLU 114 114 ? ? ? A . n B 1 115 ASP 115 115 ? ? ? A . n B 1 116 MET 116 116 ? ? ? A . n B 1 117 PRO 117 117 ? ? ? A . n B 1 118 VAL 118 118 ? ? ? A . n B 1 119 ASP 119 119 ? ? ? A . n B 1 120 PRO 120 120 ? ? ? A . n B 1 121 ASP 121 121 ? ? ? A . n B 1 122 ASN 122 122 ? ? ? A . n B 1 123 GLU 123 123 ? ? ? A . n B 1 124 ALA 124 124 ? ? ? A . n B 1 125 TYR 125 125 ? ? ? A . n B 1 126 GLU 126 126 ? ? ? A . n B 1 127 MET 127 127 ? ? ? A . n B 1 128 PRO 128 128 ? ? ? A . n B 1 129 SER 129 129 ? ? ? A . n B 1 130 GLU 130 130 ? ? ? A . n B 1 131 GLU 131 131 ? ? ? A . n B 1 132 GLY 132 132 ? ? ? A . n B 1 133 TYR 133 133 ? ? ? A . n B 1 134 GLN 134 134 ? ? ? A . n B 1 135 ASP 135 135 ? ? ? A . n B 1 136 TYR 136 136 ? ? ? A . n B 1 137 GLU 137 137 ? ? ? A . n B 1 138 PRO 138 138 ? ? ? A . n B 1 139 GLU 139 139 ? ? ? A . n B 1 140 ALA 140 140 ? ? ? A . n C 1 1 MET 1 1 ? ? ? B . n C 1 2 ASP 2 2 ? ? ? B . n C 1 3 VAL 3 3 ? ? ? B . n C 1 4 PHE 4 4 ? ? ? B . n C 1 5 MET 5 5 ? ? ? B . n C 1 6 LYS 6 6 ? ? ? B . n C 1 7 GLY 7 7 ? ? ? B . n C 1 8 LEU 8 8 ? ? ? B . n C 1 9 SER 9 9 ? ? ? B . n C 1 10 LYS 10 10 ? ? ? B . n C 1 11 ALA 11 11 ? ? ? B . n C 1 12 LYS 12 12 ? ? ? B . n C 1 13 GLU 13 13 ? ? ? B . n C 1 14 GLY 14 14 ? ? ? B . n C 1 15 VAL 15 15 ? ? ? B . n C 1 16 VAL 16 16 ? ? ? B . n C 1 17 ALA 17 17 ? ? ? B . n C 1 18 ALA 18 18 ? ? ? B . n C 1 19 ALA 19 19 ? ? ? B . n C 1 20 GLU 20 20 ? ? ? B . n C 1 21 LYS 21 21 ? ? ? B . n C 1 22 THR 22 22 ? ? ? B . n C 1 23 LYS 23 23 ? ? ? B . n C 1 24 GLN 24 24 ? ? ? B . n C 1 25 GLY 25 25 ? ? ? B . n C 1 26 VAL 26 26 ? ? ? B . n C 1 27 ALA 27 27 ? ? ? B . n C 1 28 GLU 28 28 ? ? ? B . n C 1 29 ALA 29 29 ? ? ? B . n C 1 30 ALA 30 30 ? ? ? B . n C 1 31 GLY 31 31 ? ? ? B . n C 1 32 LYS 32 32 ? ? ? B . n C 1 33 THR 33 33 ? ? ? B . n C 1 34 LYS 34 34 ? ? ? B . n C 1 35 GLU 35 35 ? ? ? B . n C 1 36 GLY 36 36 ? ? ? B . n C 1 37 VAL 37 37 37 VAL VAL B . n C 1 38 LEU 38 38 38 LEU LEU B . n C 1 39 TYR 39 39 39 TYR TYR B . n C 1 40 VAL 40 40 40 VAL VAL B . n C 1 41 GLY 41 41 41 GLY GLY B . n C 1 42 SER 42 42 42 SER SER B . n C 1 43 LYS 43 43 43 LYS LYS B . n C 1 44 THR 44 44 44 THR THR B . n C 1 45 LYS 45 45 45 LYS LYS B . n C 1 46 GLU 46 46 46 GLU GLU B . n C 1 47 GLY 47 47 47 GLY GLY B . n C 1 48 VAL 48 48 48 VAL VAL B . n C 1 49 VAL 49 49 49 VAL VAL B . n C 1 50 HIS 50 50 50 HIS HIS B . n C 1 51 GLY 51 51 51 GLY GLY B . n C 1 52 VAL 52 52 52 VAL VAL B . n C 1 53 ALA 53 53 53 ALA ALA B . n C 1 54 THR 54 54 54 THR THR B . n C 1 55 VAL 55 55 55 VAL VAL B . n C 1 56 ALA 56 56 56 ALA ALA B . n C 1 57 GLU 57 57 57 GLU GLU B . n C 1 58 LYS 58 58 58 LYS LYS B . n C 1 59 THR 59 59 59 THR THR B . n C 1 60 LYS 60 60 60 LYS LYS B . n C 1 61 GLU 61 61 61 GLU GLU B . n C 1 62 GLN 62 62 62 GLN GLN B . n C 1 63 VAL 63 63 63 VAL VAL B . n C 1 64 THR 64 64 64 THR THR B . n C 1 65 ASN 65 65 65 ASN ASN B . n C 1 66 VAL 66 66 66 VAL VAL B . n C 1 67 GLY 67 67 67 GLY GLY B . n C 1 68 GLY 68 68 68 GLY GLY B . n C 1 69 ALA 69 69 69 ALA ALA B . n C 1 70 VAL 70 70 70 VAL VAL B . n C 1 71 VAL 71 71 71 VAL VAL B . n C 1 72 THR 72 72 72 THR THR B . n C 1 73 GLY 73 73 73 GLY GLY B . n C 1 74 VAL 74 74 74 VAL VAL B . n C 1 75 THR 75 75 75 THR THR B . n C 1 76 ALA 76 76 76 ALA ALA B . n C 1 77 VAL 77 77 77 VAL VAL B . n C 1 78 ALA 78 78 78 ALA ALA B . n C 1 79 GLN 79 79 79 GLN GLN B . n C 1 80 LYS 80 80 80 LYS LYS B . n C 1 81 THR 81 81 81 THR THR B . n C 1 82 VAL 82 82 82 VAL VAL B . n C 1 83 GLU 83 83 83 GLU GLU B . n C 1 84 GLY 84 84 84 GLY GLY B . n C 1 85 ALA 85 85 85 ALA ALA B . n C 1 86 GLY 86 86 86 GLY GLY B . n C 1 87 SER 87 87 87 SER SER B . n C 1 88 ILE 88 88 88 ILE ILE B . n C 1 89 ALA 89 89 89 ALA ALA B . n C 1 90 ALA 90 90 90 ALA ALA B . n C 1 91 ALA 91 91 91 ALA ALA B . n C 1 92 THR 92 92 92 THR THR B . n C 1 93 GLY 93 93 93 GLY GLY B . n C 1 94 PHE 94 94 94 PHE PHE B . n C 1 95 VAL 95 95 95 VAL VAL B . n C 1 96 LYS 96 96 96 LYS LYS B . n C 1 97 LYS 97 97 97 LYS LYS B . n C 1 98 ASP 98 98 98 ASP ASP B . n C 1 99 GLN 99 99 ? ? ? B . n C 1 100 LEU 100 100 ? ? ? B . n C 1 101 GLY 101 101 ? ? ? B . n C 1 102 LYS 102 102 ? ? ? B . n C 1 103 ASN 103 103 ? ? ? B . n C 1 104 GLU 104 104 ? ? ? B . n C 1 105 GLU 105 105 ? ? ? B . n C 1 106 GLY 106 106 ? ? ? B . n C 1 107 ALA 107 107 ? ? ? B . n C 1 108 PRO 108 108 ? ? ? B . n C 1 109 GLN 109 109 ? ? ? B . n C 1 110 GLU 110 110 ? ? ? B . n C 1 111 GLY 111 111 ? ? ? B . n C 1 112 ILE 112 112 ? ? ? B . n C 1 113 LEU 113 113 ? ? ? B . n C 1 114 GLU 114 114 ? ? ? B . n C 1 115 ASP 115 115 ? ? ? B . n C 1 116 MET 116 116 ? ? ? B . n C 1 117 PRO 117 117 ? ? ? B . n C 1 118 VAL 118 118 ? ? ? B . n C 1 119 ASP 119 119 ? ? ? B . n C 1 120 PRO 120 120 ? ? ? B . n C 1 121 ASP 121 121 ? ? ? B . n C 1 122 ASN 122 122 ? ? ? B . n C 1 123 GLU 123 123 ? ? ? B . n C 1 124 ALA 124 124 ? ? ? B . n C 1 125 TYR 125 125 ? ? ? B . n C 1 126 GLU 126 126 ? ? ? B . n C 1 127 MET 127 127 ? ? ? B . n C 1 128 PRO 128 128 ? ? ? B . n C 1 129 SER 129 129 ? ? ? B . n C 1 130 GLU 130 130 ? ? ? B . n C 1 131 GLU 131 131 ? ? ? B . n C 1 132 GLY 132 132 ? ? ? B . n C 1 133 TYR 133 133 ? ? ? B . n C 1 134 GLN 134 134 ? ? ? B . n C 1 135 ASP 135 135 ? ? ? B . n C 1 136 TYR 136 136 ? ? ? B . n C 1 137 GLU 137 137 ? ? ? B . n C 1 138 PRO 138 138 ? ? ? B . n C 1 139 GLU 139 139 ? ? ? B . n C 1 140 ALA 140 140 ? ? ? B . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7V4C _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7V4C _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7V4C _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 7V4C _struct.title 'Heparin-induced alpha-synuclein fibrils polymorph 4' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7V4C _struct_keywords.text 'amyloid fibril, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SYUA_HUMAN _struct_ref.pdbx_db_accession P37840 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQK TVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDPDNEAYEMPSEEGYQDYEPEA ; _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7V4C F 1 ? 140 ? P37840 1 ? 140 ? 1 140 2 1 7V4C A 1 ? 140 ? P37840 1 ? 140 ? 1 140 3 1 7V4C B 1 ? 140 ? P37840 1 ? 140 ? 1 140 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 3 ? AA3 ? 3 ? AA4 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLY A 68 ? VAL A 71 ? GLY F 68 VAL F 71 AA1 2 GLY B 68 ? VAL B 71 ? GLY A 68 VAL A 71 AA1 3 GLY C 68 ? VAL C 71 ? GLY B 68 VAL B 71 AA2 1 VAL A 74 ? ALA A 76 ? VAL F 74 ALA F 76 AA2 2 VAL B 74 ? ALA B 76 ? VAL A 74 ALA A 76 AA2 3 VAL C 74 ? ALA C 76 ? VAL B 74 ALA B 76 AA3 1 ALA A 91 ? THR A 92 ? ALA F 91 THR F 92 AA3 2 ALA B 91 ? THR B 92 ? ALA A 91 THR A 92 AA3 3 ALA C 91 ? THR C 92 ? ALA B 91 THR B 92 AA4 1 VAL A 95 ? LYS A 96 ? VAL F 95 LYS F 96 AA4 2 VAL B 95 ? LYS B 96 ? VAL A 95 LYS A 96 AA4 3 VAL C 95 ? LYS C 96 ? VAL B 95 LYS B 96 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ALA A 69 ? N ALA F 69 O VAL B 70 ? O VAL A 70 AA1 2 3 N ALA B 69 ? N ALA A 69 O VAL C 70 ? O VAL B 70 AA2 1 2 N VAL A 74 ? N VAL F 74 O THR B 75 ? O THR A 75 AA2 2 3 N VAL B 74 ? N VAL A 74 O THR C 75 ? O THR B 75 AA3 1 2 N THR A 92 ? N THR F 92 O ALA B 91 ? O ALA A 91 AA3 2 3 N THR B 92 ? N THR A 92 O ALA C 91 ? O ALA B 91 AA4 1 2 N LYS A 96 ? N LYS F 96 O VAL B 95 ? O VAL A 95 AA4 2 3 N LYS B 96 ? N LYS A 96 O VAL C 95 ? O VAL B 95 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS F 45 ? ? -160.61 116.21 2 1 THR F 54 ? ? -140.03 45.97 3 1 LYS A 45 ? ? -160.64 116.19 4 1 THR A 54 ? ? -140.02 46.07 5 1 LYS B 45 ? ? -160.67 116.17 # _em_3d_fitting.entry_id 7V4C _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7V4C _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 101673 _em_3d_reconstruction.resolution 3.3 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type HELICAL _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.5 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'Heparin-induced alpha-synuclein fibrils polymorph 4' _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type 'ORGANELLE OR CELLULAR COMPONENT' _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 7V4C _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max 2000 _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 7V4C _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7V4C _em_experiment.id 1 _em_experiment.aggregation_state FILAMENT _em_experiment.reconstruction_method HELICAL _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 F MET 1 ? A MET 1 2 1 Y 1 F ASP 2 ? A ASP 2 3 1 Y 1 F VAL 3 ? A VAL 3 4 1 Y 1 F PHE 4 ? A PHE 4 5 1 Y 1 F MET 5 ? A MET 5 6 1 Y 1 F LYS 6 ? A LYS 6 7 1 Y 1 F GLY 7 ? A GLY 7 8 1 Y 1 F LEU 8 ? A LEU 8 9 1 Y 1 F SER 9 ? A SER 9 10 1 Y 1 F LYS 10 ? A LYS 10 11 1 Y 1 F ALA 11 ? A ALA 11 12 1 Y 1 F LYS 12 ? A LYS 12 13 1 Y 1 F GLU 13 ? A GLU 13 14 1 Y 1 F GLY 14 ? A GLY 14 15 1 Y 1 F VAL 15 ? A VAL 15 16 1 Y 1 F VAL 16 ? A VAL 16 17 1 Y 1 F ALA 17 ? A ALA 17 18 1 Y 1 F ALA 18 ? A ALA 18 19 1 Y 1 F ALA 19 ? A ALA 19 20 1 Y 1 F GLU 20 ? A GLU 20 21 1 Y 1 F LYS 21 ? A LYS 21 22 1 Y 1 F THR 22 ? A THR 22 23 1 Y 1 F LYS 23 ? A LYS 23 24 1 Y 1 F GLN 24 ? A GLN 24 25 1 Y 1 F GLY 25 ? A GLY 25 26 1 Y 1 F VAL 26 ? A VAL 26 27 1 Y 1 F ALA 27 ? A ALA 27 28 1 Y 1 F GLU 28 ? A GLU 28 29 1 Y 1 F ALA 29 ? A ALA 29 30 1 Y 1 F ALA 30 ? A ALA 30 31 1 Y 1 F GLY 31 ? A GLY 31 32 1 Y 1 F LYS 32 ? A LYS 32 33 1 Y 1 F THR 33 ? A THR 33 34 1 Y 1 F LYS 34 ? A LYS 34 35 1 Y 1 F GLU 35 ? A GLU 35 36 1 Y 1 F GLY 36 ? A GLY 36 37 1 Y 1 F GLN 99 ? A GLN 99 38 1 Y 1 F LEU 100 ? A LEU 100 39 1 Y 1 F GLY 101 ? A GLY 101 40 1 Y 1 F LYS 102 ? A LYS 102 41 1 Y 1 F ASN 103 ? A ASN 103 42 1 Y 1 F GLU 104 ? A GLU 104 43 1 Y 1 F GLU 105 ? A GLU 105 44 1 Y 1 F GLY 106 ? A GLY 106 45 1 Y 1 F ALA 107 ? A ALA 107 46 1 Y 1 F PRO 108 ? A PRO 108 47 1 Y 1 F GLN 109 ? A GLN 109 48 1 Y 1 F GLU 110 ? A GLU 110 49 1 Y 1 F GLY 111 ? A GLY 111 50 1 Y 1 F ILE 112 ? A ILE 112 51 1 Y 1 F LEU 113 ? A LEU 113 52 1 Y 1 F GLU 114 ? A GLU 114 53 1 Y 1 F ASP 115 ? A ASP 115 54 1 Y 1 F MET 116 ? A MET 116 55 1 Y 1 F PRO 117 ? A PRO 117 56 1 Y 1 F VAL 118 ? A VAL 118 57 1 Y 1 F ASP 119 ? A ASP 119 58 1 Y 1 F PRO 120 ? A PRO 120 59 1 Y 1 F ASP 121 ? A ASP 121 60 1 Y 1 F ASN 122 ? A ASN 122 61 1 Y 1 F GLU 123 ? A GLU 123 62 1 Y 1 F ALA 124 ? A ALA 124 63 1 Y 1 F TYR 125 ? A TYR 125 64 1 Y 1 F GLU 126 ? A GLU 126 65 1 Y 1 F MET 127 ? A MET 127 66 1 Y 1 F PRO 128 ? A PRO 128 67 1 Y 1 F SER 129 ? A SER 129 68 1 Y 1 F GLU 130 ? A GLU 130 69 1 Y 1 F GLU 131 ? A GLU 131 70 1 Y 1 F GLY 132 ? A GLY 132 71 1 Y 1 F TYR 133 ? A TYR 133 72 1 Y 1 F GLN 134 ? A GLN 134 73 1 Y 1 F ASP 135 ? A ASP 135 74 1 Y 1 F TYR 136 ? A TYR 136 75 1 Y 1 F GLU 137 ? A GLU 137 76 1 Y 1 F PRO 138 ? A PRO 138 77 1 Y 1 F GLU 139 ? A GLU 139 78 1 Y 1 F ALA 140 ? A ALA 140 79 1 Y 1 A MET 1 ? B MET 1 80 1 Y 1 A ASP 2 ? B ASP 2 81 1 Y 1 A VAL 3 ? B VAL 3 82 1 Y 1 A PHE 4 ? B PHE 4 83 1 Y 1 A MET 5 ? B MET 5 84 1 Y 1 A LYS 6 ? B LYS 6 85 1 Y 1 A GLY 7 ? B GLY 7 86 1 Y 1 A LEU 8 ? B LEU 8 87 1 Y 1 A SER 9 ? B SER 9 88 1 Y 1 A LYS 10 ? B LYS 10 89 1 Y 1 A ALA 11 ? B ALA 11 90 1 Y 1 A LYS 12 ? B LYS 12 91 1 Y 1 A GLU 13 ? B GLU 13 92 1 Y 1 A GLY 14 ? B GLY 14 93 1 Y 1 A VAL 15 ? B VAL 15 94 1 Y 1 A VAL 16 ? B VAL 16 95 1 Y 1 A ALA 17 ? B ALA 17 96 1 Y 1 A ALA 18 ? B ALA 18 97 1 Y 1 A ALA 19 ? B ALA 19 98 1 Y 1 A GLU 20 ? B GLU 20 99 1 Y 1 A LYS 21 ? B LYS 21 100 1 Y 1 A THR 22 ? B THR 22 101 1 Y 1 A LYS 23 ? B LYS 23 102 1 Y 1 A GLN 24 ? B GLN 24 103 1 Y 1 A GLY 25 ? B GLY 25 104 1 Y 1 A VAL 26 ? B VAL 26 105 1 Y 1 A ALA 27 ? B ALA 27 106 1 Y 1 A GLU 28 ? B GLU 28 107 1 Y 1 A ALA 29 ? B ALA 29 108 1 Y 1 A ALA 30 ? B ALA 30 109 1 Y 1 A GLY 31 ? B GLY 31 110 1 Y 1 A LYS 32 ? B LYS 32 111 1 Y 1 A THR 33 ? B THR 33 112 1 Y 1 A LYS 34 ? B LYS 34 113 1 Y 1 A GLU 35 ? B GLU 35 114 1 Y 1 A GLY 36 ? B GLY 36 115 1 Y 1 A GLN 99 ? B GLN 99 116 1 Y 1 A LEU 100 ? B LEU 100 117 1 Y 1 A GLY 101 ? B GLY 101 118 1 Y 1 A LYS 102 ? B LYS 102 119 1 Y 1 A ASN 103 ? B ASN 103 120 1 Y 1 A GLU 104 ? B GLU 104 121 1 Y 1 A GLU 105 ? B GLU 105 122 1 Y 1 A GLY 106 ? B GLY 106 123 1 Y 1 A ALA 107 ? B ALA 107 124 1 Y 1 A PRO 108 ? B PRO 108 125 1 Y 1 A GLN 109 ? B GLN 109 126 1 Y 1 A GLU 110 ? B GLU 110 127 1 Y 1 A GLY 111 ? B GLY 111 128 1 Y 1 A ILE 112 ? B ILE 112 129 1 Y 1 A LEU 113 ? B LEU 113 130 1 Y 1 A GLU 114 ? B GLU 114 131 1 Y 1 A ASP 115 ? B ASP 115 132 1 Y 1 A MET 116 ? B MET 116 133 1 Y 1 A PRO 117 ? B PRO 117 134 1 Y 1 A VAL 118 ? B VAL 118 135 1 Y 1 A ASP 119 ? B ASP 119 136 1 Y 1 A PRO 120 ? B PRO 120 137 1 Y 1 A ASP 121 ? B ASP 121 138 1 Y 1 A ASN 122 ? B ASN 122 139 1 Y 1 A GLU 123 ? B GLU 123 140 1 Y 1 A ALA 124 ? B ALA 124 141 1 Y 1 A TYR 125 ? B TYR 125 142 1 Y 1 A GLU 126 ? B GLU 126 143 1 Y 1 A MET 127 ? B MET 127 144 1 Y 1 A PRO 128 ? B PRO 128 145 1 Y 1 A SER 129 ? B SER 129 146 1 Y 1 A GLU 130 ? B GLU 130 147 1 Y 1 A GLU 131 ? B GLU 131 148 1 Y 1 A GLY 132 ? B GLY 132 149 1 Y 1 A TYR 133 ? B TYR 133 150 1 Y 1 A GLN 134 ? B GLN 134 151 1 Y 1 A ASP 135 ? B ASP 135 152 1 Y 1 A TYR 136 ? B TYR 136 153 1 Y 1 A GLU 137 ? B GLU 137 154 1 Y 1 A PRO 138 ? B PRO 138 155 1 Y 1 A GLU 139 ? B GLU 139 156 1 Y 1 A ALA 140 ? B ALA 140 157 1 Y 1 B MET 1 ? C MET 1 158 1 Y 1 B ASP 2 ? C ASP 2 159 1 Y 1 B VAL 3 ? C VAL 3 160 1 Y 1 B PHE 4 ? C PHE 4 161 1 Y 1 B MET 5 ? C MET 5 162 1 Y 1 B LYS 6 ? C LYS 6 163 1 Y 1 B GLY 7 ? C GLY 7 164 1 Y 1 B LEU 8 ? C LEU 8 165 1 Y 1 B SER 9 ? C SER 9 166 1 Y 1 B LYS 10 ? C LYS 10 167 1 Y 1 B ALA 11 ? C ALA 11 168 1 Y 1 B LYS 12 ? C LYS 12 169 1 Y 1 B GLU 13 ? C GLU 13 170 1 Y 1 B GLY 14 ? C GLY 14 171 1 Y 1 B VAL 15 ? C VAL 15 172 1 Y 1 B VAL 16 ? C VAL 16 173 1 Y 1 B ALA 17 ? C ALA 17 174 1 Y 1 B ALA 18 ? C ALA 18 175 1 Y 1 B ALA 19 ? C ALA 19 176 1 Y 1 B GLU 20 ? C GLU 20 177 1 Y 1 B LYS 21 ? C LYS 21 178 1 Y 1 B THR 22 ? C THR 22 179 1 Y 1 B LYS 23 ? C LYS 23 180 1 Y 1 B GLN 24 ? C GLN 24 181 1 Y 1 B GLY 25 ? C GLY 25 182 1 Y 1 B VAL 26 ? C VAL 26 183 1 Y 1 B ALA 27 ? C ALA 27 184 1 Y 1 B GLU 28 ? C GLU 28 185 1 Y 1 B ALA 29 ? C ALA 29 186 1 Y 1 B ALA 30 ? C ALA 30 187 1 Y 1 B GLY 31 ? C GLY 31 188 1 Y 1 B LYS 32 ? C LYS 32 189 1 Y 1 B THR 33 ? C THR 33 190 1 Y 1 B LYS 34 ? C LYS 34 191 1 Y 1 B GLU 35 ? C GLU 35 192 1 Y 1 B GLY 36 ? C GLY 36 193 1 Y 1 B GLN 99 ? C GLN 99 194 1 Y 1 B LEU 100 ? C LEU 100 195 1 Y 1 B GLY 101 ? C GLY 101 196 1 Y 1 B LYS 102 ? C LYS 102 197 1 Y 1 B ASN 103 ? C ASN 103 198 1 Y 1 B GLU 104 ? C GLU 104 199 1 Y 1 B GLU 105 ? C GLU 105 200 1 Y 1 B GLY 106 ? C GLY 106 201 1 Y 1 B ALA 107 ? C ALA 107 202 1 Y 1 B PRO 108 ? C PRO 108 203 1 Y 1 B GLN 109 ? C GLN 109 204 1 Y 1 B GLU 110 ? C GLU 110 205 1 Y 1 B GLY 111 ? C GLY 111 206 1 Y 1 B ILE 112 ? C ILE 112 207 1 Y 1 B LEU 113 ? C LEU 113 208 1 Y 1 B GLU 114 ? C GLU 114 209 1 Y 1 B ASP 115 ? C ASP 115 210 1 Y 1 B MET 116 ? C MET 116 211 1 Y 1 B PRO 117 ? C PRO 117 212 1 Y 1 B VAL 118 ? C VAL 118 213 1 Y 1 B ASP 119 ? C ASP 119 214 1 Y 1 B PRO 120 ? C PRO 120 215 1 Y 1 B ASP 121 ? C ASP 121 216 1 Y 1 B ASN 122 ? C ASN 122 217 1 Y 1 B GLU 123 ? C GLU 123 218 1 Y 1 B ALA 124 ? C ALA 124 219 1 Y 1 B TYR 125 ? C TYR 125 220 1 Y 1 B GLU 126 ? C GLU 126 221 1 Y 1 B MET 127 ? C MET 127 222 1 Y 1 B PRO 128 ? C PRO 128 223 1 Y 1 B SER 129 ? C SER 129 224 1 Y 1 B GLU 130 ? C GLU 130 225 1 Y 1 B GLU 131 ? C GLU 131 226 1 Y 1 B GLY 132 ? C GLY 132 227 1 Y 1 B TYR 133 ? C TYR 133 228 1 Y 1 B GLN 134 ? C GLN 134 229 1 Y 1 B ASP 135 ? C ASP 135 230 1 Y 1 B TYR 136 ? C TYR 136 231 1 Y 1 B GLU 137 ? C GLU 137 232 1 Y 1 B PRO 138 ? C PRO 138 233 1 Y 1 B GLU 139 ? C GLU 139 234 1 Y 1 B ALA 140 ? C ALA 140 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASN N N N N 14 ASN CA C N S 15 ASN C C N N 16 ASN O O N N 17 ASN CB C N N 18 ASN CG C N N 19 ASN OD1 O N N 20 ASN ND2 N N N 21 ASN OXT O N N 22 ASN H H N N 23 ASN H2 H N N 24 ASN HA H N N 25 ASN HB2 H N N 26 ASN HB3 H N N 27 ASN HD21 H N N 28 ASN HD22 H N N 29 ASN HXT H N N 30 ASP N N N N 31 ASP CA C N S 32 ASP C C N N 33 ASP O O N N 34 ASP CB C N N 35 ASP CG C N N 36 ASP OD1 O N N 37 ASP OD2 O N N 38 ASP OXT O N N 39 ASP H H N N 40 ASP H2 H N N 41 ASP HA H N N 42 ASP HB2 H N N 43 ASP HB3 H N N 44 ASP HD2 H N N 45 ASP HXT H N N 46 GLN N N N N 47 GLN CA C N S 48 GLN C C N N 49 GLN O O N N 50 GLN CB C N N 51 GLN CG C N N 52 GLN CD C N N 53 GLN OE1 O N N 54 GLN NE2 N N N 55 GLN OXT O N N 56 GLN H H N N 57 GLN H2 H N N 58 GLN HA H N N 59 GLN HB2 H N N 60 GLN HB3 H N N 61 GLN HG2 H N N 62 GLN HG3 H N N 63 GLN HE21 H N N 64 GLN HE22 H N N 65 GLN HXT H N N 66 GLU N N N N 67 GLU CA C N S 68 GLU C C N N 69 GLU O O N N 70 GLU CB C N N 71 GLU CG C N N 72 GLU CD C N N 73 GLU OE1 O N N 74 GLU OE2 O N N 75 GLU OXT O N N 76 GLU H H N N 77 GLU H2 H N N 78 GLU HA H N N 79 GLU HB2 H N N 80 GLU HB3 H N N 81 GLU HG2 H N N 82 GLU HG3 H N N 83 GLU HE2 H N N 84 GLU HXT H N N 85 GLY N N N N 86 GLY CA C N N 87 GLY C C N N 88 GLY O O N N 89 GLY OXT O N N 90 GLY H H N N 91 GLY H2 H N N 92 GLY HA2 H N N 93 GLY HA3 H N N 94 GLY HXT H N N 95 HIS N N N N 96 HIS CA C N S 97 HIS C C N N 98 HIS O O N N 99 HIS CB C N N 100 HIS CG C Y N 101 HIS ND1 N Y N 102 HIS CD2 C Y N 103 HIS CE1 C Y N 104 HIS NE2 N Y N 105 HIS OXT O N N 106 HIS H H N N 107 HIS H2 H N N 108 HIS HA H N N 109 HIS HB2 H N N 110 HIS HB3 H N N 111 HIS HD1 H N N 112 HIS HD2 H N N 113 HIS HE1 H N N 114 HIS HE2 H N N 115 HIS HXT H N N 116 ILE N N N N 117 ILE CA C N S 118 ILE C C N N 119 ILE O O N N 120 ILE CB C N S 121 ILE CG1 C N N 122 ILE CG2 C N N 123 ILE CD1 C N N 124 ILE OXT O N N 125 ILE H H N N 126 ILE H2 H N N 127 ILE HA H N N 128 ILE HB H N N 129 ILE HG12 H N N 130 ILE HG13 H N N 131 ILE HG21 H N N 132 ILE HG22 H N N 133 ILE HG23 H N N 134 ILE HD11 H N N 135 ILE HD12 H N N 136 ILE HD13 H N N 137 ILE HXT H N N 138 LEU N N N N 139 LEU CA C N S 140 LEU C C N N 141 LEU O O N N 142 LEU CB C N N 143 LEU CG C N N 144 LEU CD1 C N N 145 LEU CD2 C N N 146 LEU OXT O N N 147 LEU H H N N 148 LEU H2 H N N 149 LEU HA H N N 150 LEU HB2 H N N 151 LEU HB3 H N N 152 LEU HG H N N 153 LEU HD11 H N N 154 LEU HD12 H N N 155 LEU HD13 H N N 156 LEU HD21 H N N 157 LEU HD22 H N N 158 LEU HD23 H N N 159 LEU HXT H N N 160 LYS N N N N 161 LYS CA C N S 162 LYS C C N N 163 LYS O O N N 164 LYS CB C N N 165 LYS CG C N N 166 LYS CD C N N 167 LYS CE C N N 168 LYS NZ N N N 169 LYS OXT O N N 170 LYS H H N N 171 LYS H2 H N N 172 LYS HA H N N 173 LYS HB2 H N N 174 LYS HB3 H N N 175 LYS HG2 H N N 176 LYS HG3 H N N 177 LYS HD2 H N N 178 LYS HD3 H N N 179 LYS HE2 H N N 180 LYS HE3 H N N 181 LYS HZ1 H N N 182 LYS HZ2 H N N 183 LYS HZ3 H N N 184 LYS HXT H N N 185 MET N N N N 186 MET CA C N S 187 MET C C N N 188 MET O O N N 189 MET CB C N N 190 MET CG C N N 191 MET SD S N N 192 MET CE C N N 193 MET OXT O N N 194 MET H H N N 195 MET H2 H N N 196 MET HA H N N 197 MET HB2 H N N 198 MET HB3 H N N 199 MET HG2 H N N 200 MET HG3 H N N 201 MET HE1 H N N 202 MET HE2 H N N 203 MET HE3 H N N 204 MET HXT H N N 205 PHE N N N N 206 PHE CA C N S 207 PHE C C N N 208 PHE O O N N 209 PHE CB C N N 210 PHE CG C Y N 211 PHE CD1 C Y N 212 PHE CD2 C Y N 213 PHE CE1 C Y N 214 PHE CE2 C Y N 215 PHE CZ C Y N 216 PHE OXT O N N 217 PHE H H N N 218 PHE H2 H N N 219 PHE HA H N N 220 PHE HB2 H N N 221 PHE HB3 H N N 222 PHE HD1 H N N 223 PHE HD2 H N N 224 PHE HE1 H N N 225 PHE HE2 H N N 226 PHE HZ H N N 227 PHE HXT H N N 228 PRO N N N N 229 PRO CA C N S 230 PRO C C N N 231 PRO O O N N 232 PRO CB C N N 233 PRO CG C N N 234 PRO CD C N N 235 PRO OXT O N N 236 PRO H H N N 237 PRO HA H N N 238 PRO HB2 H N N 239 PRO HB3 H N N 240 PRO HG2 H N N 241 PRO HG3 H N N 242 PRO HD2 H N N 243 PRO HD3 H N N 244 PRO HXT H N N 245 SER N N N N 246 SER CA C N S 247 SER C C N N 248 SER O O N N 249 SER CB C N N 250 SER OG O N N 251 SER OXT O N N 252 SER H H N N 253 SER H2 H N N 254 SER HA H N N 255 SER HB2 H N N 256 SER HB3 H N N 257 SER HG H N N 258 SER HXT H N N 259 THR N N N N 260 THR CA C N S 261 THR C C N N 262 THR O O N N 263 THR CB C N R 264 THR OG1 O N N 265 THR CG2 C N N 266 THR OXT O N N 267 THR H H N N 268 THR H2 H N N 269 THR HA H N N 270 THR HB H N N 271 THR HG1 H N N 272 THR HG21 H N N 273 THR HG22 H N N 274 THR HG23 H N N 275 THR HXT H N N 276 TYR N N N N 277 TYR CA C N S 278 TYR C C N N 279 TYR O O N N 280 TYR CB C N N 281 TYR CG C Y N 282 TYR CD1 C Y N 283 TYR CD2 C Y N 284 TYR CE1 C Y N 285 TYR CE2 C Y N 286 TYR CZ C Y N 287 TYR OH O N N 288 TYR OXT O N N 289 TYR H H N N 290 TYR H2 H N N 291 TYR HA H N N 292 TYR HB2 H N N 293 TYR HB3 H N N 294 TYR HD1 H N N 295 TYR HD2 H N N 296 TYR HE1 H N N 297 TYR HE2 H N N 298 TYR HH H N N 299 TYR HXT H N N 300 VAL N N N N 301 VAL CA C N S 302 VAL C C N N 303 VAL O O N N 304 VAL CB C N N 305 VAL CG1 C N N 306 VAL CG2 C N N 307 VAL OXT O N N 308 VAL H H N N 309 VAL H2 H N N 310 VAL HA H N N 311 VAL HB H N N 312 VAL HG11 H N N 313 VAL HG12 H N N 314 VAL HG13 H N N 315 VAL HG21 H N N 316 VAL HG22 H N N 317 VAL HG23 H N N 318 VAL HXT H N N 319 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASN N CA sing N N 13 ASN N H sing N N 14 ASN N H2 sing N N 15 ASN CA C sing N N 16 ASN CA CB sing N N 17 ASN CA HA sing N N 18 ASN C O doub N N 19 ASN C OXT sing N N 20 ASN CB CG sing N N 21 ASN CB HB2 sing N N 22 ASN CB HB3 sing N N 23 ASN CG OD1 doub N N 24 ASN CG ND2 sing N N 25 ASN ND2 HD21 sing N N 26 ASN ND2 HD22 sing N N 27 ASN OXT HXT sing N N 28 ASP N CA sing N N 29 ASP N H sing N N 30 ASP N H2 sing N N 31 ASP CA C sing N N 32 ASP CA CB sing N N 33 ASP CA HA sing N N 34 ASP C O doub N N 35 ASP C OXT sing N N 36 ASP CB CG sing N N 37 ASP CB HB2 sing N N 38 ASP CB HB3 sing N N 39 ASP CG OD1 doub N N 40 ASP CG OD2 sing N N 41 ASP OD2 HD2 sing N N 42 ASP OXT HXT sing N N 43 GLN N CA sing N N 44 GLN N H sing N N 45 GLN N H2 sing N N 46 GLN CA C sing N N 47 GLN CA CB sing N N 48 GLN CA HA sing N N 49 GLN C O doub N N 50 GLN C OXT sing N N 51 GLN CB CG sing N N 52 GLN CB HB2 sing N N 53 GLN CB HB3 sing N N 54 GLN CG CD sing N N 55 GLN CG HG2 sing N N 56 GLN CG HG3 sing N N 57 GLN CD OE1 doub N N 58 GLN CD NE2 sing N N 59 GLN NE2 HE21 sing N N 60 GLN NE2 HE22 sing N N 61 GLN OXT HXT sing N N 62 GLU N CA sing N N 63 GLU N H sing N N 64 GLU N H2 sing N N 65 GLU CA C sing N N 66 GLU CA CB sing N N 67 GLU CA HA sing N N 68 GLU C O doub N N 69 GLU C OXT sing N N 70 GLU CB CG sing N N 71 GLU CB HB2 sing N N 72 GLU CB HB3 sing N N 73 GLU CG CD sing N N 74 GLU CG HG2 sing N N 75 GLU CG HG3 sing N N 76 GLU CD OE1 doub N N 77 GLU CD OE2 sing N N 78 GLU OE2 HE2 sing N N 79 GLU OXT HXT sing N N 80 GLY N CA sing N N 81 GLY N H sing N N 82 GLY N H2 sing N N 83 GLY CA C sing N N 84 GLY CA HA2 sing N N 85 GLY CA HA3 sing N N 86 GLY C O doub N N 87 GLY C OXT sing N N 88 GLY OXT HXT sing N N 89 HIS N CA sing N N 90 HIS N H sing N N 91 HIS N H2 sing N N 92 HIS CA C sing N N 93 HIS CA CB sing N N 94 HIS CA HA sing N N 95 HIS C O doub N N 96 HIS C OXT sing N N 97 HIS CB CG sing N N 98 HIS CB HB2 sing N N 99 HIS CB HB3 sing N N 100 HIS CG ND1 sing Y N 101 HIS CG CD2 doub Y N 102 HIS ND1 CE1 doub Y N 103 HIS ND1 HD1 sing N N 104 HIS CD2 NE2 sing Y N 105 HIS CD2 HD2 sing N N 106 HIS CE1 NE2 sing Y N 107 HIS CE1 HE1 sing N N 108 HIS NE2 HE2 sing N N 109 HIS OXT HXT sing N N 110 ILE N CA sing N N 111 ILE N H sing N N 112 ILE N H2 sing N N 113 ILE CA C sing N N 114 ILE CA CB sing N N 115 ILE CA HA sing N N 116 ILE C O doub N N 117 ILE C OXT sing N N 118 ILE CB CG1 sing N N 119 ILE CB CG2 sing N N 120 ILE CB HB sing N N 121 ILE CG1 CD1 sing N N 122 ILE CG1 HG12 sing N N 123 ILE CG1 HG13 sing N N 124 ILE CG2 HG21 sing N N 125 ILE CG2 HG22 sing N N 126 ILE CG2 HG23 sing N N 127 ILE CD1 HD11 sing N N 128 ILE CD1 HD12 sing N N 129 ILE CD1 HD13 sing N N 130 ILE OXT HXT sing N N 131 LEU N CA sing N N 132 LEU N H sing N N 133 LEU N H2 sing N N 134 LEU CA C sing N N 135 LEU CA CB sing N N 136 LEU CA HA sing N N 137 LEU C O doub N N 138 LEU C OXT sing N N 139 LEU CB CG sing N N 140 LEU CB HB2 sing N N 141 LEU CB HB3 sing N N 142 LEU CG CD1 sing N N 143 LEU CG CD2 sing N N 144 LEU CG HG sing N N 145 LEU CD1 HD11 sing N N 146 LEU CD1 HD12 sing N N 147 LEU CD1 HD13 sing N N 148 LEU CD2 HD21 sing N N 149 LEU CD2 HD22 sing N N 150 LEU CD2 HD23 sing N N 151 LEU OXT HXT sing N N 152 LYS N CA sing N N 153 LYS N H sing N N 154 LYS N H2 sing N N 155 LYS CA C sing N N 156 LYS CA CB sing N N 157 LYS CA HA sing N N 158 LYS C O doub N N 159 LYS C OXT sing N N 160 LYS CB CG sing N N 161 LYS CB HB2 sing N N 162 LYS CB HB3 sing N N 163 LYS CG CD sing N N 164 LYS CG HG2 sing N N 165 LYS CG HG3 sing N N 166 LYS CD CE sing N N 167 LYS CD HD2 sing N N 168 LYS CD HD3 sing N N 169 LYS CE NZ sing N N 170 LYS CE HE2 sing N N 171 LYS CE HE3 sing N N 172 LYS NZ HZ1 sing N N 173 LYS NZ HZ2 sing N N 174 LYS NZ HZ3 sing N N 175 LYS OXT HXT sing N N 176 MET N CA sing N N 177 MET N H sing N N 178 MET N H2 sing N N 179 MET CA C sing N N 180 MET CA CB sing N N 181 MET CA HA sing N N 182 MET C O doub N N 183 MET C OXT sing N N 184 MET CB CG sing N N 185 MET CB HB2 sing N N 186 MET CB HB3 sing N N 187 MET CG SD sing N N 188 MET CG HG2 sing N N 189 MET CG HG3 sing N N 190 MET SD CE sing N N 191 MET CE HE1 sing N N 192 MET CE HE2 sing N N 193 MET CE HE3 sing N N 194 MET OXT HXT sing N N 195 PHE N CA sing N N 196 PHE N H sing N N 197 PHE N H2 sing N N 198 PHE CA C sing N N 199 PHE CA CB sing N N 200 PHE CA HA sing N N 201 PHE C O doub N N 202 PHE C OXT sing N N 203 PHE CB CG sing N N 204 PHE CB HB2 sing N N 205 PHE CB HB3 sing N N 206 PHE CG CD1 doub Y N 207 PHE CG CD2 sing Y N 208 PHE CD1 CE1 sing Y N 209 PHE CD1 HD1 sing N N 210 PHE CD2 CE2 doub Y N 211 PHE CD2 HD2 sing N N 212 PHE CE1 CZ doub Y N 213 PHE CE1 HE1 sing N N 214 PHE CE2 CZ sing Y N 215 PHE CE2 HE2 sing N N 216 PHE CZ HZ sing N N 217 PHE OXT HXT sing N N 218 PRO N CA sing N N 219 PRO N CD sing N N 220 PRO N H sing N N 221 PRO CA C sing N N 222 PRO CA CB sing N N 223 PRO CA HA sing N N 224 PRO C O doub N N 225 PRO C OXT sing N N 226 PRO CB CG sing N N 227 PRO CB HB2 sing N N 228 PRO CB HB3 sing N N 229 PRO CG CD sing N N 230 PRO CG HG2 sing N N 231 PRO CG HG3 sing N N 232 PRO CD HD2 sing N N 233 PRO CD HD3 sing N N 234 PRO OXT HXT sing N N 235 SER N CA sing N N 236 SER N H sing N N 237 SER N H2 sing N N 238 SER CA C sing N N 239 SER CA CB sing N N 240 SER CA HA sing N N 241 SER C O doub N N 242 SER C OXT sing N N 243 SER CB OG sing N N 244 SER CB HB2 sing N N 245 SER CB HB3 sing N N 246 SER OG HG sing N N 247 SER OXT HXT sing N N 248 THR N CA sing N N 249 THR N H sing N N 250 THR N H2 sing N N 251 THR CA C sing N N 252 THR CA CB sing N N 253 THR CA HA sing N N 254 THR C O doub N N 255 THR C OXT sing N N 256 THR CB OG1 sing N N 257 THR CB CG2 sing N N 258 THR CB HB sing N N 259 THR OG1 HG1 sing N N 260 THR CG2 HG21 sing N N 261 THR CG2 HG22 sing N N 262 THR CG2 HG23 sing N N 263 THR OXT HXT sing N N 264 TYR N CA sing N N 265 TYR N H sing N N 266 TYR N H2 sing N N 267 TYR CA C sing N N 268 TYR CA CB sing N N 269 TYR CA HA sing N N 270 TYR C O doub N N 271 TYR C OXT sing N N 272 TYR CB CG sing N N 273 TYR CB HB2 sing N N 274 TYR CB HB3 sing N N 275 TYR CG CD1 doub Y N 276 TYR CG CD2 sing Y N 277 TYR CD1 CE1 sing Y N 278 TYR CD1 HD1 sing N N 279 TYR CD2 CE2 doub Y N 280 TYR CD2 HD2 sing N N 281 TYR CE1 CZ doub Y N 282 TYR CE1 HE1 sing N N 283 TYR CE2 CZ sing Y N 284 TYR CE2 HE2 sing N N 285 TYR CZ OH sing N N 286 TYR OH HH sing N N 287 TYR OXT HXT sing N N 288 VAL N CA sing N N 289 VAL N H sing N N 290 VAL N H2 sing N N 291 VAL CA C sing N N 292 VAL CA CB sing N N 293 VAL CA HA sing N N 294 VAL C O doub N N 295 VAL C OXT sing N N 296 VAL CB CG1 sing N N 297 VAL CB CG2 sing N N 298 VAL CB HB sing N N 299 VAL CG1 HG11 sing N N 300 VAL CG1 HG12 sing N N 301 VAL CG1 HG13 sing N N 302 VAL CG2 HG21 sing N N 303 VAL CG2 HG22 sing N N 304 VAL CG2 HG23 sing N N 305 VAL OXT HXT sing N N 306 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type NONE _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.id 1 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 1 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 562 _em_entity_assembly_recombinant.organism 'Escherichia coli' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.angular_rotation_per_subunit -3.06 _em_helical_entity.axial_rise_per_subunit 4.80 _em_helical_entity.axial_symmetry C1 _em_helical_entity.details ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 55 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? _em_image_recording.avg_electron_dose_per_subtomogram ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? ? ? 1 ? ? 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? ? ? 8 'MODEL REFINEMENT' ? ? ? ? ? ? 9 OTHER ? ? ? ? ? ? 10 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 12 CLASSIFICATION ? ? ? 1 ? ? 13 RECONSTRUCTION ? ? ? 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 7V4C _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O # loop_