HEADER ANTIBIOTIC 13-AUG-21 7V4F TITLE UNIQUE NON-HEME HYDROXYLASE IN BIOSYNTHESIS OF NUCLEOSIDE ANTIBIOTIC TITLE 2 PATHWAY UNCOVER MECHANISM OF REACTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-HYDROXYLASE; COMPND 3 CHAIN: B, A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SP. MK730-62F2; SOURCE 3 ORGANISM_TAXID: 643403; SOURCE 4 GENE: CPZ10; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI-PICHIA PASTORIS SHUTTLE VECTOR SOURCE 6 PPPGUT1; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 1182037 KEYWDS CAPRAZAMYCIN, MRAY, BETA-HYDROXYLASE, ANTIBIOTIC EXPDTA X-RAY DIFFRACTION AUTHOR T.L.LI,M.Z.SAEID REVDAT 3 29-NOV-23 7V4F 1 REMARK REVDAT 2 10-AUG-22 7V4F 1 JRNL REVDAT 1 23-FEB-22 7V4F 0 JRNL AUTH S.M.ZADEH,M.H.CHEN,Z.C.WANG,E.K.ASTANI,I.W.LO,K.H.LIN, JRNL AUTH 2 N.S.HSU,K.ADHIKARI,S.Y.LYU,H.Y.TSAI,Y.TERASAWA,M.YABE, JRNL AUTH 3 K.YAMAMOTO,S.ICHIKAWA,T.L.LI JRNL TITL BETA-HYDROXYLATION OF JRNL TITL 2 ALPHA-AMINO-BETA-HYDROXYLBUTANOYL-GLYCYLURIDINE CATALYZED BY JRNL TITL 3 A NONHEME HYDROXYLASE ENSURES THE MATURATION OF CAPRAZAMYCIN JRNL REF COMMUN CHEM V. 5 87 2022 JRNL REFN ESSN 2399-3669 JRNL DOI 10.1038/S42004-022-00703-6 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.18.2_3874: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 81.7 REMARK 3 NUMBER OF REFLECTIONS : 25285 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.890 REMARK 3 FREE R VALUE TEST SET COUNT : 3041 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.4600 - 5.5300 0.99 1948 162 0.1800 0.2184 REMARK 3 2 5.5300 - 4.4000 1.00 1988 170 0.1509 0.1693 REMARK 3 3 4.4000 - 3.8400 1.00 1983 171 0.1472 0.1837 REMARK 3 4 3.8400 - 3.4900 1.00 1967 172 0.1652 0.2508 REMARK 3 5 3.4900 - 3.2400 1.00 1954 166 0.1795 0.2134 REMARK 3 6 3.2400 - 3.0500 1.00 1964 170 0.2101 0.2996 REMARK 3 7 3.0500 - 2.9000 1.00 1987 172 0.2089 0.2907 REMARK 3 8 2.9000 - 2.7700 1.00 1975 171 0.2163 0.3073 REMARK 3 9 2.7700 - 2.6700 1.00 1975 166 0.1988 0.3086 REMARK 3 10 2.6700 - 2.5800 1.00 1976 174 0.2251 0.3094 REMARK 3 11 2.5800 - 2.4900 0.99 1955 165 0.2181 0.2818 REMARK 3 12 2.4900 - 2.4200 0.97 1918 163 0.2198 0.3075 REMARK 3 13 2.4200 - 2.3600 0.88 1720 154 0.2198 0.2896 REMARK 3 14 2.3600 - 2.3000 0.75 1505 124 0.2087 0.3340 REMARK 3 15 2.3000 - 2.2500 0.64 1272 104 0.2215 0.2697 REMARK 3 16 2.2500 - 2.2000 0.57 1128 97 0.2288 0.2859 REMARK 3 17 2.2000 - 2.1600 0.55 1080 91 0.2319 0.2584 REMARK 3 18 2.1600 - 2.1200 0.54 1066 95 0.2298 0.3223 REMARK 3 19 2.1200 - 2.0800 0.53 1048 89 0.2393 0.2888 REMARK 3 20 2.0800 - 2.0400 0.53 1044 89 0.2504 0.3445 REMARK 3 21 2.0400 - 2.0100 0.52 1019 88 0.2518 0.2832 REMARK 3 22 2.0100 - 1.9800 0.51 1024 88 0.2623 0.3263 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2852 REMARK 3 ANGLE : 1.130 3869 REMARK 3 CHIRALITY : 0.065 419 REMARK 3 PLANARITY : 0.007 511 REMARK 3 DIHEDRAL : 26.342 391 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7V4F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1300023953. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL15A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25823 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 26.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4P7X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM SULFATE 12% V/V PEG 8K REMARK 280 10 MG, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.94650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.02450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.02450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 77.91975 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.02450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.02450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 25.97325 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.02450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.02450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 77.91975 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.02450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.02450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 25.97325 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 51.94650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -89.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 51.94650 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -51.94650 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 FE FE B 205 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 343 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 349 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 355 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 GLY B 3 REMARK 465 ARG B 4 REMARK 465 ARG B 5 REMARK 465 LYS B 6 REMARK 465 ALA B 7 REMARK 465 CYS B 8 REMARK 465 PHE B 9 REMARK 465 VAL B 10 REMARK 465 THR B 11 REMARK 465 GLY B 179 REMARK 465 GLU B 180 REMARK 465 SER B 181 REMARK 465 LYS B 182 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 GLY A 3 REMARK 465 ARG A 4 REMARK 465 ARG A 5 REMARK 465 LYS A 6 REMARK 465 ALA A 7 REMARK 465 CYS A 8 REMARK 465 PHE A 9 REMARK 465 VAL A 10 REMARK 465 THR A 11 REMARK 465 GLY A 179 REMARK 465 GLU A 180 REMARK 465 SER A 181 REMARK 465 LYS A 182 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 52 OE2 GLU B 61 2.01 REMARK 500 O HOH B 380 O HOH B 390 2.01 REMARK 500 OH TYR B 112 O4 SIN B 202 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 170 NE - CZ - NH1 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG B 170 NE - CZ - NH2 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE B 41 -171.48 78.52 REMARK 500 ARG B 65 -42.51 -133.66 REMARK 500 GLN B 66 153.82 -44.83 REMARK 500 LEU A 19 2.65 -150.58 REMARK 500 HIS A 37 81.99 -155.88 REMARK 500 PHE A 41 172.43 81.69 REMARK 500 THR A 156 5.25 -66.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 373 DISTANCE = 5.86 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 205 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 89 OE1 REMARK 620 2 GLU B 89 OE1 0.0 REMARK 620 3 ASP B 92 OD2 93.0 93.0 REMARK 620 4 ASP B 92 OD2 93.0 93.0 0.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 204 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 115 NE2 REMARK 620 2 ASP B 117 OD1 79.8 REMARK 620 3 ASP B 117 OD2 120.1 51.8 REMARK 620 4 5KC B 201 OG1 82.2 57.7 95.9 REMARK 620 5 CO2 B 203 O2 132.5 138.8 87.0 136.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 203 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 140 O REMARK 620 2 ASP B 140 OD2 76.4 REMARK 620 3 HOH B 351 O 76.3 113.4 REMARK 620 4 ASP A 140 O 72.7 110.9 3.8 REMARK 620 5 HOH A 336 O 75.1 115.3 2.8 4.5 REMARK 620 6 HOH A 340 O 71.5 113.1 5.1 3.2 3.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 202 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 117 OD2 REMARK 620 2 HIS A 160 NE2 98.8 REMARK 620 N 1 DBREF 7V4F B 1 182 UNP C4NCJ7 C4NCJ7_9ACTN 1 182 DBREF 7V4F A 1 182 UNP C4NCJ7 C4NCJ7_9ACTN 1 182 SEQRES 1 B 182 MET PRO GLY ARG ARG LYS ALA CYS PHE VAL THR ALA LEU SEQRES 2 B 182 THR SER ARG THR GLU LEU ASP ILE ASP PRO ASP LYS LEU SEQRES 3 B 182 ARG GLU SER VAL VAL GLU LEU LEU GLU ARG HIS PRO LEU SEQRES 4 B 182 VAL PHE GLU GLY THR ARG GLN LEU ALA LEU GLN HIS ARG SEQRES 5 B 182 PRO GLU ALA THR ASP PRO TRP TYR GLU GLY CYS GLN ARG SEQRES 6 B 182 GLN SER LEU ILE SER SER ASP SER ASP PHE THR GLU VAL SEQRES 7 B 182 HIS GLY GLU LEU ARG ASP THR TYR LEU GLY GLU VAL PHE SEQRES 8 B 182 ASP ARG LEU PRO PHE LYS PRO ILE ARG THR ARG ILE MET SEQRES 9 B 182 ALA LEU ASP PRO LYS TYR CYS TYR SER VAL HIS ARG ASP SEQRES 10 B 182 LEU THR PRO ARG TYR HIS LEU ALA VAL THR THR SER GLU SEQRES 11 B 182 HIS ALA ARG PHE VAL PHE ILE GLU HIS ASP LYS VAL LEU SEQRES 12 B 182 HIS ILE PRO ALA ASP GLY ASP LEU TYR TYR VAL ASP THR SEQRES 13 B 182 ARG GLN LEU HIS SER ALA PHE ASN GLY GLY ASP ASP MET SEQRES 14 B 182 ARG ILE HIS ILE VAL PHE GLY THR ASP GLY GLU SER LYS SEQRES 1 A 182 MET PRO GLY ARG ARG LYS ALA CYS PHE VAL THR ALA LEU SEQRES 2 A 182 THR SER ARG THR GLU LEU ASP ILE ASP PRO ASP LYS LEU SEQRES 3 A 182 ARG GLU SER VAL VAL GLU LEU LEU GLU ARG HIS PRO LEU SEQRES 4 A 182 VAL PHE GLU GLY THR ARG GLN LEU ALA LEU GLN HIS ARG SEQRES 5 A 182 PRO GLU ALA THR ASP PRO TRP TYR GLU GLY CYS GLN ARG SEQRES 6 A 182 GLN SER LEU ILE SER SER ASP SER ASP PHE THR GLU VAL SEQRES 7 A 182 HIS GLY GLU LEU ARG ASP THR TYR LEU GLY GLU VAL PHE SEQRES 8 A 182 ASP ARG LEU PRO PHE LYS PRO ILE ARG THR ARG ILE MET SEQRES 9 A 182 ALA LEU ASP PRO LYS TYR CYS TYR SER VAL HIS ARG ASP SEQRES 10 A 182 LEU THR PRO ARG TYR HIS LEU ALA VAL THR THR SER GLU SEQRES 11 A 182 HIS ALA ARG PHE VAL PHE ILE GLU HIS ASP LYS VAL LEU SEQRES 12 A 182 HIS ILE PRO ALA ASP GLY ASP LEU TYR TYR VAL ASP THR SEQRES 13 A 182 ARG GLN LEU HIS SER ALA PHE ASN GLY GLY ASP ASP MET SEQRES 14 A 182 ARG ILE HIS ILE VAL PHE GLY THR ASP GLY GLU SER LYS HET 5KC B 201 16 HET SIN B 202 8 HET CO2 B 203 3 HET FE B 204 1 HET FE B 205 1 HET SIN A 201 8 HET FE A 202 1 HET FE A 203 1 HETNAM 5KC (2S,3S)-2-AZANYL-4-(2-HYDROXY-2-OXOETHYLAMINO)-3- HETNAM 2 5KC OXIDANYL-BUTANOIC ACID HETNAM SIN SUCCINIC ACID HETNAM CO2 CARBON DIOXIDE HETNAM FE FE (III) ION FORMUL 3 5KC C6 H12 N2 O5 FORMUL 4 SIN 2(C4 H6 O4) FORMUL 5 CO2 C O2 FORMUL 6 FE 4(FE 3+) FORMUL 11 HOH *171(H2 O) HELIX 1 AA1 ASP B 22 HIS B 37 1 16 HELIX 2 AA2 GLY B 80 ARG B 83 5 4 HELIX 3 AA3 THR B 85 ARG B 93 1 9 HELIX 4 AA4 ASP A 22 ARG A 36 1 15 HELIX 5 AA5 TYR A 60 GLN A 64 5 5 HELIX 6 AA6 ARG A 65 ILE A 69 5 5 HELIX 7 AA7 SER A 71 PHE A 75 5 5 HELIX 8 AA8 GLY A 80 ARG A 83 5 4 HELIX 9 AA9 THR A 85 LEU A 94 1 10 SHEET 1 AA1 6 THR B 14 THR B 17 0 SHEET 2 AA1 6 LEU B 151 VAL B 154 -1 O LEU B 151 N THR B 17 SHEET 3 AA1 6 ARG B 121 THR B 127 -1 N HIS B 123 O TYR B 152 SHEET 4 AA1 6 ARG B 170 THR B 177 -1 O ILE B 171 N VAL B 126 SHEET 5 AA1 6 PRO B 98 LEU B 106 -1 N ARG B 102 O VAL B 174 SHEET 6 AA1 6 THR B 44 ALA B 48 -1 N ARG B 45 O ALA B 105 SHEET 1 AA2 2 GLN B 50 HIS B 51 0 SHEET 2 AA2 2 GLU B 77 VAL B 78 -1 O GLU B 77 N HIS B 51 SHEET 1 AA3 4 TYR B 110 CYS B 111 0 SHEET 2 AA3 4 HIS B 160 ASN B 164 -1 O ASN B 164 N TYR B 110 SHEET 3 AA3 4 ALA B 132 PHE B 136 -1 N VAL B 135 O SER B 161 SHEET 4 AA3 4 LYS B 141 LEU B 143 -1 O LEU B 143 N PHE B 134 SHEET 1 AA4 6 THR A 14 THR A 17 0 SHEET 2 AA4 6 LEU A 151 VAL A 154 -1 O TYR A 153 N SER A 15 SHEET 3 AA4 6 ARG A 121 THR A 127 -1 N HIS A 123 O TYR A 152 SHEET 4 AA4 6 ARG A 170 GLY A 176 -1 O ILE A 171 N VAL A 126 SHEET 5 AA4 6 ILE A 99 LEU A 106 -1 N ARG A 102 O VAL A 174 SHEET 6 AA4 6 THR A 44 ALA A 48 -1 N ARG A 45 O ALA A 105 SHEET 1 AA5 2 GLN A 50 HIS A 51 0 SHEET 2 AA5 2 GLU A 77 VAL A 78 -1 O GLU A 77 N HIS A 51 SHEET 1 AA6 4 TYR A 110 CYS A 111 0 SHEET 2 AA6 4 HIS A 160 ASN A 164 -1 O ASN A 164 N TYR A 110 SHEET 3 AA6 4 ALA A 132 PHE A 136 -1 N VAL A 135 O SER A 161 SHEET 4 AA6 4 LYS A 141 LEU A 143 -1 O LEU A 143 N PHE A 134 LINK OE1 GLU B 89 FE FE B 205 1555 1555 2.37 LINK OE1 GLU B 89 FE FE B 205 1555 7555 2.37 LINK OD2 ASP B 92 FE FE B 205 1555 1555 2.36 LINK OD2 ASP B 92 FE FE B 205 1555 7555 2.36 LINK NE2 HIS B 115 FE FE B 204 1555 1555 2.32 LINK OD1 ASP B 117 FE FE B 204 1555 1555 2.42 LINK OD2 ASP B 117 FE FE B 204 1555 1555 2.60 LINK O ASP B 140 FE FE A 203 1555 8554 2.33 LINK OD2 ASP B 140 FE FE A 203 1555 8554 2.71 LINK OG1 5KC B 201 FE FE B 204 1555 1555 2.31 LINK O2 CO2 B 203 FE FE B 204 1555 1555 1.89 LINK O HOH B 351 FE FE A 203 8554 1555 2.45 LINK OD2 ASP A 117 FE FE A 202 1555 1555 2.71 LINK O ASP A 140 FE FE A 203 1555 1555 2.36 LINK NE2 HIS A 160 FE FE A 202 1555 1555 2.59 LINK FE FE A 203 O HOH A 336 1555 1555 2.63 LINK FE FE A 203 O HOH A 340 1555 1555 2.53 CRYST1 82.049 82.049 103.893 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012188 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012188 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009625 0.00000