HEADER HYDROLASE 20-AUG-21 7V6I TITLE CRYSTAL STRUCTURE OF LACTO-N-BIOSIDASE BSAX FROM BIFIDOBACTERIUM TITLE 2 SAGUINI, LACTO-N-BIOSE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: LACTO-N-BIOSIDASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BIFIDOBACTERIUM SAGUINI DSM 23967; SOURCE 3 ORGANISM_TAXID: 1437607; SOURCE 4 GENE: BISA_2023; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET23B KEYWDS GLYCOSIDE HYDROLASE, LACTO-N-BIOSIDASE, LACTO-N-BIOSE COMPLEX, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.YAMADA,S.FUSHINOBU REVDAT 3 29-NOV-23 7V6I 1 REMARK REVDAT 2 06-APR-22 7V6I 1 JRNL REVDAT 1 09-FEB-22 7V6I 0 JRNL AUTH C.YAMADA,T.KATAYAMA,S.FUSHINOBU JRNL TITL CRYSTAL STRUCTURES OF GLYCOSIDE HYDROLASE FAMILY 136 JRNL TITL 2 LACTO-N-BIOSIDASES FROM MONKEY GUT- AND HUMAN ADULT GUT JRNL TITL 3 BACTERIA. JRNL REF BIOSCI.BIOTECHNOL.BIOCHEM. V. 86 464 2022 JRNL REFN ISSN 0916-8451 JRNL PMID 35092420 JRNL DOI 10.1093/BBB/ZBAC015 REMARK 2 REMARK 2 RESOLUTION. 2.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 19380 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 972 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.51 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.58 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1400 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1860 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4617 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 104 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.65000 REMARK 3 B22 (A**2) : 0.65000 REMARK 3 B33 (A**2) : -2.12000 REMARK 3 B12 (A**2) : 0.33000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.391 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.287 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.199 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.990 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.897 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4750 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4129 ; 0.001 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6485 ; 1.655 ; 1.646 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9497 ; 1.305 ; 1.596 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 596 ; 8.872 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 269 ;36.892 ;24.312 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 693 ;14.287 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;22.526 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 632 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5646 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1133 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2387 ; 1.786 ; 2.647 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2386 ; 1.785 ; 2.646 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2982 ; 2.686 ; 3.968 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2983 ; 2.686 ; 3.969 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2362 ; 2.235 ; 2.884 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2362 ; 2.228 ; 2.884 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3503 ; 3.502 ; 4.248 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5309 ; 4.819 ;30.986 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5309 ; 4.821 ;30.985 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 7V6I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1300024148. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20374 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.510 REMARK 200 RESOLUTION RANGE LOW (A) : 49.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : 0.18400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.20 REMARK 200 R MERGE FOR SHELL (I) : 0.69500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5GQF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5M AMMONIUM SULFATE, 0.1M SODIUM REMARK 280 ACETATE (PH 4.6), 30% (W/V) PEG 4000, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.36567 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.73133 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 52.73133 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 26.36567 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 33 REMARK 465 GLN A 34 REMARK 465 GLN A 35 REMARK 465 THR A 36 REMARK 465 THR A 37 REMARK 465 SER A 38 REMARK 465 THR A 39 REMARK 465 LYS A 40 REMARK 465 ASP A 41 REMARK 465 SER A 42 REMARK 465 SER A 43 REMARK 465 LYS A 44 REMARK 465 ALA A 642 REMARK 465 ALA A 643 REMARK 465 ALA A 644 REMARK 465 LEU A 645 REMARK 465 GLU A 646 REMARK 465 HIS A 647 REMARK 465 HIS A 648 REMARK 465 HIS A 649 REMARK 465 HIS A 650 REMARK 465 HIS A 651 REMARK 465 HIS A 652 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 95 77.01 -103.76 REMARK 500 ASN A 148 70.09 -66.86 REMARK 500 ASP A 183 67.22 -154.40 REMARK 500 GLU A 218 29.21 -148.86 REMARK 500 ASN A 383 -169.12 -116.81 REMARK 500 ASN A 419 16.50 85.91 REMARK 500 ASP A 426 -108.76 -115.23 REMARK 500 ALA A 432 86.75 -69.91 REMARK 500 ALA A 451 167.94 72.74 REMARK 500 ASN A 457 -175.50 68.52 REMARK 500 LEU A 480 56.66 -117.43 REMARK 500 ASN A 508 2.56 -157.71 REMARK 500 ASP A 571 78.43 -161.59 REMARK 500 GLU A 622 -53.45 -132.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 418 ASN A 419 148.37 REMARK 500 REMARK 500 REMARK: NULL DBREF1 7V6I A 34 641 UNP A0A087D8U9_9BIFI DBREF2 7V6I A A0A087D8U9 34 641 SEQADV 7V6I MET A 33 UNP A0A087D8U INITIATING METHIONINE SEQADV 7V6I ALA A 642 UNP A0A087D8U EXPRESSION TAG SEQADV 7V6I ALA A 643 UNP A0A087D8U EXPRESSION TAG SEQADV 7V6I ALA A 644 UNP A0A087D8U EXPRESSION TAG SEQADV 7V6I LEU A 645 UNP A0A087D8U EXPRESSION TAG SEQADV 7V6I GLU A 646 UNP A0A087D8U EXPRESSION TAG SEQADV 7V6I HIS A 647 UNP A0A087D8U EXPRESSION TAG SEQADV 7V6I HIS A 648 UNP A0A087D8U EXPRESSION TAG SEQADV 7V6I HIS A 649 UNP A0A087D8U EXPRESSION TAG SEQADV 7V6I HIS A 650 UNP A0A087D8U EXPRESSION TAG SEQADV 7V6I HIS A 651 UNP A0A087D8U EXPRESSION TAG SEQADV 7V6I HIS A 652 UNP A0A087D8U EXPRESSION TAG SEQRES 1 A 620 MET GLN GLN THR THR SER THR LYS ASP SER SER LYS GLY SEQRES 2 A 620 THR THR TYR TYR VAL SER SER GLU HIS GLY SER ASP ASP SEQRES 3 A 620 ASN ALA GLY THR SER GLN LYS SER PRO TRP LYS THR LEU SEQRES 4 A 620 ASN LYS VAL ASN GLU ILE ALA SER ASP LEU GLU PRO GLY SEQRES 5 A 620 ASP SER VAL LEU LEU GLU TYR GLY SER GLU PHE ASN ASP SEQRES 6 A 620 GLN TRP LEU HIS ILE HIS ASP THR ALA GLY THR PRO ASP SEQRES 7 A 620 ALA PRO ILE THR ILE SER ALA TYR GLY ASP GLU ALA GLU SEQRES 8 A 620 GLY LYS PRO LEU ILE ALA SER ASN GLY VAL GLU GLY SER SEQRES 9 A 620 GLN TRP TYR GLN ASP TYR ARG ALA ASN VAL GLY ASN HIS SEQRES 10 A 620 LYS THR ARG GLY THR VAL SER THR THR LEU LEU LEU LYS SEQRES 11 A 620 ASP VAL SER TYR ILE THR VAL SER ASN LEU GLU ILE THR SEQRES 12 A 620 ASN ASP ASP GLU SER VAL TYR ASP PRO ILE ASP THR TRP SEQRES 13 A 620 GLN TRP THR ASP THR ALA ASP ALA ASP GLY THR SER LEU SEQRES 14 A 620 ASP ARG SER ALA ASP ARG MET ASP ARG THR GLY VAL ALA SEQRES 15 A 620 GLY ILE ALA GLU ASN GLY SER THR MET SER HIS VAL THR SEQRES 16 A 620 LEU ASP ASN LEU ASN ILE HIS ASP VAL ASP GLY ASN LEU SEQRES 17 A 620 TYR ASN LYS HIS MET ALA ASN GLY GLY ILE TYR PHE MET SEQRES 18 A 620 ALA HIS LEU PRO LYS GLU ARG THR SER ALA ALA ASP ASP SEQRES 19 A 620 ALA TRP LEU LYS GLU HIS VAL SER ARG PHE ASP HIS ILE SEQRES 20 A 620 THR ILE ARG ASN SER THR VAL LYS ASP VAL ASP ARG TRP SEQRES 21 A 620 GLY ILE ALA VAL GLY TYR THR ALA TYR LEU ASN TYR ILE SEQRES 22 A 620 ASP LYS SER SER ARG TRP GLN ASN ASP PHE ASP TYR GLY SEQRES 23 A 620 ASP GLY THR ILE ASP ASP ASP LEU ILE ALA LYS TYR GLY SEQRES 24 A 620 ALA THR ASN VAL LEU ILE GLU ASN ASN THR ILE ILE GLY SEQRES 25 A 620 ALA GLY GLY ASP ALA ILE THR THR MET TYR CYS ASP ARG SEQRES 26 A 620 PRO VAL ILE GLN HIS ASN VAL GLY ASP ARG VAL SER LYS SEQRES 27 A 620 HIS ILE ASN SER VAL ASP TYR THR ALA ASN VAL LEU ASN SEQRES 28 A 620 ASN THR GLY ASN ALA GLY VAL GLY TYR GLY ARG VAL ALA SEQRES 29 A 620 ALA GLY ILE TRP PRO TRP ARG CYS LYS ASP PRO VAL PHE SEQRES 30 A 620 GLN TYR ASN GLU VAL TYR SER ASN LEU ASN ALA ASP HIS SEQRES 31 A 620 GLY ASN GLY ASP GLY GLN ALA TRP ASP ALA ASP TYR GLY SEQRES 32 A 620 ASP GLY THR LEU TYR GLN TYR ASN TYR SER TYR GLY ASN SEQRES 33 A 620 SER PHE ALA SER LEU MET ILE CYS ASN TRP LYS ALA VAL SEQRES 34 A 620 ASN THR THR PHE ARG TYR ASN ILE SER GLN ASN ASP LYS SEQRES 35 A 620 ARG GLY VAL PHE ASP LEU PRO SER ASN GLY PRO GLY ASN SEQRES 36 A 620 HIS ILE TYR ASN ASN THR VAL TYR VAL ASP ALA ASP SER SEQRES 37 A 620 ARG VAL LEU THR THR ARG SER ASN SER GLN ALA GLN PHE SEQRES 38 A 620 GLU ASN ASN ILE PHE ILE ASN ALA THR ASP GLU LYS LYS SEQRES 39 A 620 THR GLU GLU TRP ASN ILE GLY GLY TYR TYR GLY GLY GLN SEQRES 40 A 620 VAL TYR ASP ASN ASN LEU TYR VAL ASN TYR ALA ASN THR SEQRES 41 A 620 PRO ALA SER ASP ALA ASN ALA ILE VAL ALA ASP ASP VAL SEQRES 42 A 620 ALA ASP VAL LEU GLU ASP ALA GLY SER ALA PRO THR ALA SEQRES 43 A 620 ALA GLN ALA SER GLY ALA GLU TYR SER ARG LYS GLY SER SEQRES 44 A 620 THR THR VAL PHE ASP GLY TYR LYS PRO THR THR ASN SER SEQRES 45 A 620 PRO ALA ILE ASN ALA GLY LYS VAL VAL SER ASP LEU ASN SEQRES 46 A 620 ASP TYR ALA VAL GLU HIS ASP PHE PHE GLY ASN THR ILE SEQRES 47 A 620 LYS GLY LYS PRO ASP LEU GLY ALA VAL GLU SER ALA ALA SEQRES 48 A 620 ALA LEU GLU HIS HIS HIS HIS HIS HIS HET NAG B 1 15 HET GAL B 2 11 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE FORMUL 2 NAG C8 H15 N O6 FORMUL 2 GAL C6 H12 O6 FORMUL 3 HOH *104(H2 O) HELIX 1 AA1 LEU A 71 ALA A 78 1 8 HELIX 2 AA2 SER A 79 LEU A 81 5 3 HELIX 3 AA3 ASP A 120 GLY A 124 5 5 HELIX 4 AA4 VAL A 133 GLY A 135 5 3 HELIX 5 AA5 ASP A 195 THR A 199 5 5 HELIX 6 AA6 SER A 262 ALA A 264 5 3 HELIX 7 AA7 ASP A 265 LYS A 270 1 6 HELIX 8 AA8 TYR A 301 ASP A 306 1 6 HELIX 9 AA9 ASP A 323 GLY A 331 1 9 HELIX 10 AB1 ASN A 419 GLY A 423 5 5 HELIX 11 AB2 GLY A 534 GLY A 537 5 4 HELIX 12 AB3 ASP A 564 VAL A 568 5 5 HELIX 13 AB4 PHE A 595 LYS A 599 5 5 SHEET 1 AA114 THR A 47 VAL A 50 0 SHEET 2 AA114 SER A 86 GLU A 90 1 O LEU A 88 N TYR A 48 SHEET 3 AA114 ILE A 113 TYR A 118 1 O THR A 114 N VAL A 87 SHEET 4 AA114 ILE A 167 SER A 170 1 O SER A 170 N ILE A 115 SHEET 5 AA114 THR A 222 ASP A 229 1 O THR A 227 N VAL A 169 SHEET 6 AA114 ARG A 275 ARG A 282 1 O ARG A 275 N MET A 223 SHEET 7 AA114 LEU A 336 GLU A 338 1 O LEU A 336 N ILE A 279 SHEET 8 AA114 VAL A 359 GLN A 361 1 O VAL A 359 N ILE A 337 SHEET 9 AA114 VAL A 408 GLN A 410 1 O VAL A 408 N ILE A 360 SHEET 10 AA114 LEU A 439 GLN A 441 1 O LEU A 439 N PHE A 409 SHEET 11 AA114 THR A 464 ARG A 466 1 O THR A 464 N TYR A 440 SHEET 12 AA114 HIS A 488 TYR A 490 1 O HIS A 488 N PHE A 465 SHEET 13 AA114 ALA A 511 GLU A 514 1 O GLN A 512 N ILE A 489 SHEET 14 AA114 GLN A 539 ASP A 542 1 O VAL A 540 N PHE A 513 SHEET 1 AA214 GLU A 94 ASN A 96 0 SHEET 2 AA214 LEU A 127 ALA A 129 1 O LEU A 127 N PHE A 95 SHEET 3 AA214 GLU A 173 ASN A 176 1 O GLU A 173 N ILE A 128 SHEET 4 AA214 ASN A 232 ASP A 237 1 O ASP A 235 N ASN A 176 SHEET 5 AA214 THR A 285 ASP A 290 1 O THR A 285 N ILE A 233 SHEET 6 AA214 THR A 341 ALA A 345 1 O THR A 341 N VAL A 286 SHEET 7 AA214 VAL A 364 ASP A 366 1 O ASP A 366 N ILE A 342 SHEET 8 AA214 GLU A 413 TYR A 415 1 O TYR A 415 N GLY A 365 SHEET 9 AA214 TYR A 444 TYR A 446 1 O TYR A 446 N VAL A 414 SHEET 10 AA214 ILE A 469 GLN A 471 1 O ILE A 469 N SER A 445 SHEET 11 AA214 THR A 493 VAL A 496 1 O TYR A 495 N SER A 470 SHEET 12 AA214 ILE A 517 ASN A 520 1 O ILE A 519 N VAL A 496 SHEET 13 AA214 LEU A 545 VAL A 547 1 O VAL A 547 N PHE A 518 SHEET 14 AA214 ILE A 560 ALA A 562 1 O ILE A 560 N TYR A 546 SHEET 1 AA3 3 LEU A 100 ALA A 106 0 SHEET 2 AA3 3 ARG A 152 SER A 165 1 O THR A 158 N LEU A 100 SHEET 3 AA3 3 GLN A 137 ASP A 141 -1 N GLN A 140 O GLY A 153 SHEET 1 AA4 7 LEU A 100 ALA A 106 0 SHEET 2 AA4 7 ARG A 152 SER A 165 1 O THR A 158 N LEU A 100 SHEET 3 AA4 7 ASP A 209 ALA A 217 1 O ALA A 214 N LEU A 161 SHEET 4 AA4 7 GLY A 248 ALA A 254 1 O TYR A 251 N GLY A 215 SHEET 5 AA4 7 TRP A 292 THR A 299 1 O ALA A 295 N ILE A 250 SHEET 6 AA4 7 ILE A 350 MET A 353 1 O MET A 353 N VAL A 296 SHEET 7 AA4 7 ILE A 399 TRP A 402 1 O TRP A 402 N THR A 352 SHEET 1 AA5 2 ALA A 332 THR A 333 0 SHEET 2 AA5 2 CYS A 355 ASP A 356 1 O ASP A 356 N ALA A 332 SHEET 1 AA6 2 ASN A 380 LEU A 382 0 SHEET 2 AA6 2 ASN A 387 VAL A 390 -1 O ALA A 388 N VAL A 381 SHEET 1 AA7 3 TRP A 430 ALA A 432 0 SHEET 2 AA7 3 LEU A 453 ILE A 455 1 O MET A 454 N ALA A 432 SHEET 3 AA7 3 PHE A 478 ASP A 479 1 O ASP A 479 N LEU A 453 SHEET 1 AA8 2 GLY A 435 ASP A 436 0 SHEET 2 AA8 2 ALA A 460 VAL A 461 1 O VAL A 461 N GLY A 435 LINK O3 NAG B 1 C1 GAL B 2 1555 1555 1.47 CISPEP 1 ASP A 290 ARG A 291 0 -2.64 CRYST1 113.240 113.240 79.097 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008831 0.005098 0.000000 0.00000 SCALE2 0.000000 0.010197 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012643 0.00000