HEADER NUCLEAR PROTEIN 23-AUG-21 7V8P TITLE CRYSTAL STRUCTURE OF THE MUKE DIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHROMOSOME PARTITION PROTEIN MUKE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHIGELLA FLEXNERI; SOURCE 3 ORGANISM_TAXID: 623; SOURCE 4 GENE: MUKE, CQA91_05990, DQP17_14640, NCTC8524_01712, SOURCE 5 NCTC9783_04161, SAMEA3710514_03893, SAMEA3710568_03348; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS STRUCTURAL MAINTENANCE OF CHROMOSOMES; CHROMATIN REMODELING, NUCLEAR KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.W.QIAN,L.GUO REVDAT 2 29-NOV-23 7V8P 1 REMARK REVDAT 1 05-JAN-22 7V8P 0 JRNL AUTH J.W.QIAN,X.Y.WANG,K.DENG,D.F.LI,L.GUO JRNL TITL CRYSTAL STRUCTURE OF THE CHROMOSOME PARTITION PROTEIN MUKE JRNL TITL 2 HOMODIMER. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 589 229 2021 JRNL REFN ESSN 1090-2104 JRNL PMID 34929446 JRNL DOI 10.1016/J.BBRC.2021.12.032 REMARK 2 REMARK 2 RESOLUTION. 2.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 8604 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.780 REMARK 3 FREE R VALUE TEST SET COUNT : 411 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.6560 - 3.5167 0.99 2764 157 0.1967 0.2307 REMARK 3 2 3.5167 - 2.7918 0.99 2740 122 0.2521 0.3305 REMARK 3 3 2.7918 - 2.4400 0.98 2689 132 0.2729 0.3310 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 1 THROUGH 220) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8302 34.4444 -16.9704 REMARK 3 T TENSOR REMARK 3 T11: 0.3214 T22: 0.4546 REMARK 3 T33: 0.4119 T12: -0.0105 REMARK 3 T13: -0.0462 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 2.4977 L22: 2.2355 REMARK 3 L33: 6.3631 L12: 0.3621 REMARK 3 L13: -1.2066 L23: -0.4837 REMARK 3 S TENSOR REMARK 3 S11: -0.0227 S12: 0.2748 S13: 0.2652 REMARK 3 S21: -0.0953 S22: 0.2039 S23: 0.1520 REMARK 3 S31: 0.4819 S32: -0.6946 S33: -0.1597 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7V8P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1300024173. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-AUG-07 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8635 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.439 REMARK 200 RESOLUTION RANGE LOW (A) : 55.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.44 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.92400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3EUH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM CHLORIDE;0.1 M IBS PH REMARK 280 8.5;25% W/V POLYETHYLENE GLYCOL 3,350, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 32.78000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.18000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 32.78000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.18000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 130 REMARK 465 ARG A 131 REMARK 465 SER A 132 REMARK 465 THR A 133 REMARK 465 GLY A 134 REMARK 465 SER A 135 REMARK 465 ASP A 136 REMARK 465 VAL A 137 REMARK 465 ASP A 198 REMARK 465 GLY A 199 REMARK 465 GLU A 200 REMARK 465 ALA A 201 REMARK 465 MET A 202 REMARK 465 PRO A 203 REMARK 465 ILE A 204 REMARK 465 GLU A 205 REMARK 465 ASN A 206 REMARK 465 HIS A 207 REMARK 465 LEU A 208 REMARK 465 GLN A 209 REMARK 465 LEU A 210 REMARK 465 ASN A 211 REMARK 465 ASP A 212 REMARK 465 GLU A 213 REMARK 465 THR A 214 REMARK 465 SER A 221 REMARK 465 GLY A 222 REMARK 465 GLU A 223 REMARK 465 GLU A 224 REMARK 465 GLU A 225 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 184 -133.08 56.48 REMARK 500 REMARK 500 REMARK: NULL DBREF1 7V8P A 1 225 UNP A0A383JZS2_SHIFL DBREF2 7V8P A A0A383JZS2 10 234 SEQRES 1 A 225 MET PRO VAL LYS LEU ALA GLN ALA LEU ALA ASN PRO LEU SEQRES 2 A 225 PHE PRO ALA LEU ASP SER ALA LEU ARG SER GLY ARG HIS SEQRES 3 A 225 ILE GLY LEU ASP GLU LEU ASP ASN HIS ALA PHE LEU MET SEQRES 4 A 225 ASP PHE GLN GLU TYR LEU GLU GLU PHE TYR ALA ARG TYR SEQRES 5 A 225 ASN VAL GLU LEU ILE ARG ALA PRO GLU GLY PHE PHE TYR SEQRES 6 A 225 LEU ARG PRO ARG SER THR THR LEU ILE PRO ARG SER VAL SEQRES 7 A 225 LEU SER GLU LEU ASP MET MET VAL GLY LYS ILE LEU CYS SEQRES 8 A 225 TYR LEU TYR LEU SER PRO GLU ARG LEU ALA ASN GLU GLY SEQRES 9 A 225 ILE PHE THR GLN GLN GLU LEU TYR ASP GLU LEU LEU THR SEQRES 10 A 225 LEU ALA ASP GLU ALA LYS LEU LEU LYS LEU VAL ASN ASN SEQRES 11 A 225 ARG SER THR GLY SER ASP VAL ASP ARG GLN LYS LEU GLN SEQRES 12 A 225 GLU LYS VAL ARG SER SER LEU ASN ARG LEU ARG ARG LEU SEQRES 13 A 225 GLY MET VAL TRP PHE MET GLY HIS ASP SER SER LYS PHE SEQRES 14 A 225 ARG ILE THR GLU SER VAL PHE ARG PHE GLY ALA ASP VAL SEQRES 15 A 225 ARG ALA GLY ASP ASP PRO ARG GLU ALA GLN ARG ARG LEU SEQRES 16 A 225 ILE ARG ASP GLY GLU ALA MET PRO ILE GLU ASN HIS LEU SEQRES 17 A 225 GLN LEU ASN ASP GLU THR GLU GLU SER GLN PRO ASP SER SEQRES 18 A 225 GLY GLU GLU GLU FORMUL 2 HOH *4(H2 O) HELIX 1 AA1 PRO A 2 ASN A 11 1 10 HELIX 2 AA2 LEU A 13 SER A 23 1 11 HELIX 3 AA3 GLU A 31 PHE A 41 1 11 HELIX 4 AA4 PHE A 41 ARG A 51 1 11 HELIX 5 AA5 SER A 80 SER A 96 1 17 HELIX 6 AA6 GLU A 98 GLU A 103 1 6 HELIX 7 AA7 GLN A 108 ALA A 119 1 12 HELIX 8 AA8 ASP A 120 LYS A 126 1 7 HELIX 9 AA9 ARG A 139 LEU A 156 1 18 HELIX 10 AB1 GLU A 173 GLY A 179 5 7 HELIX 11 AB2 ASP A 187 ILE A 196 1 10 SHEET 1 AA1 2 VAL A 54 ARG A 58 0 SHEET 2 AA1 2 PHE A 64 PRO A 68 -1 O TYR A 65 N ILE A 57 SHEET 1 AA2 2 ARG A 76 VAL A 78 0 SHEET 2 AA2 2 GLU A 216 GLN A 218 1 O GLN A 218 N SER A 77 SHEET 1 AA3 3 ILE A 105 THR A 107 0 SHEET 2 AA3 3 LYS A 168 ILE A 171 -1 O PHE A 169 N PHE A 106 SHEET 3 AA3 3 VAL A 159 PHE A 161 -1 N TRP A 160 O ARG A 170 CRYST1 65.560 64.360 62.250 90.00 116.65 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015253 0.000000 0.007655 0.00000 SCALE2 0.000000 0.015538 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017974 0.00000