HEADER OXIDOREDUCTASE 27-AUG-21 7VA1 TITLE CRYSTAL STRUCTURE OF HUMAN 3-PHOSPHOGLYCERATE DEHYDROGENASE IN COMPLEX TITLE 2 WITH GDD-04-35 COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-3-PHOSPHOGLYCERATE DEHYDROGENASE; COMPND 3 CHAIN: B, A, C, D; COMPND 4 SYNONYM: 3-PGDH,2-OXOGLUTARATE REDUCTASE,MALATE DEHYDROGENASE; COMPND 5 EC: 1.1.1.95,1.1.1.399,1.1.1.37; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PHGDH, PGDH3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.CEN,D.GAO,J.ZHOU,P.TIAN REVDAT 2 29-NOV-23 7VA1 1 REMARK REVDAT 1 08-MAR-23 7VA1 0 JRNL AUTH Y.CEN,D.GAO,J.ZHOU,P.TIAN JRNL TITL CRYSTAL STRUCTURE OF HUMAN 3-PHOSPHOGLYCERATE DEHYDROGENASE JRNL TITL 2 IN COMPLEX WITH GDD-04-35 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 85387 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 4312 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.3700 - 5.4000 0.97 2715 137 0.1653 0.1524 REMARK 3 2 5.4000 - 4.2900 0.99 2721 125 0.1519 0.1832 REMARK 3 3 4.2900 - 3.7500 0.99 2716 164 0.1558 0.1713 REMARK 3 4 3.7500 - 3.4100 0.99 2687 160 0.1662 0.1864 REMARK 3 5 3.4100 - 3.1600 0.99 2714 150 0.2021 0.2175 REMARK 3 6 3.1600 - 2.9800 0.99 2718 137 0.2010 0.2332 REMARK 3 7 2.9800 - 2.8300 0.99 2697 138 0.2084 0.2348 REMARK 3 8 2.8300 - 2.7000 1.00 2711 130 0.2033 0.2154 REMARK 3 9 2.7000 - 2.6000 0.99 2715 143 0.1955 0.2733 REMARK 3 10 2.6000 - 2.5100 1.00 2687 159 0.2053 0.2474 REMARK 3 11 2.5100 - 2.4300 1.00 2717 134 0.1946 0.2637 REMARK 3 12 2.4300 - 2.3600 1.00 2702 143 0.2035 0.2427 REMARK 3 13 2.3600 - 2.3000 1.00 2681 146 0.2015 0.2375 REMARK 3 14 2.3000 - 2.2400 1.00 2705 153 0.1909 0.2200 REMARK 3 15 2.2400 - 2.1900 1.00 2702 143 0.2017 0.2566 REMARK 3 16 2.1900 - 2.1500 1.00 2725 152 0.2030 0.2638 REMARK 3 17 2.1500 - 2.1000 0.99 2711 156 0.2103 0.2550 REMARK 3 18 2.1000 - 2.0600 1.00 2639 157 0.2264 0.2599 REMARK 3 19 2.0600 - 2.0300 0.99 2706 146 0.2256 0.3103 REMARK 3 20 2.0300 - 1.9900 1.00 2725 121 0.2340 0.2754 REMARK 3 21 1.9900 - 1.9600 1.00 2705 140 0.2505 0.3062 REMARK 3 22 1.9600 - 1.9300 0.99 2719 140 0.2527 0.2721 REMARK 3 23 1.9300 - 1.9000 1.00 2668 145 0.2650 0.3100 REMARK 3 24 1.9000 - 1.8700 1.00 2685 142 0.2809 0.3630 REMARK 3 25 1.8700 - 1.8500 1.00 2709 162 0.2885 0.3216 REMARK 3 26 1.8500 - 1.8300 1.00 2705 128 0.3144 0.3055 REMARK 3 27 1.8200 - 1.8000 1.00 2687 157 0.3245 0.3362 REMARK 3 28 1.8000 - 1.7800 1.00 2724 130 0.3331 0.3907 REMARK 3 29 1.7800 - 1.7600 1.00 2729 137 0.3449 0.3517 REMARK 3 30 1.7600 - 1.7400 1.00 2650 137 0.3529 0.3772 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.205 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.047 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 6023 REMARK 3 ANGLE : 0.859 8162 REMARK 3 CHIRALITY : 0.055 916 REMARK 3 PLANARITY : 0.005 1065 REMARK 3 DIHEDRAL : 22.467 2226 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -0.7532 -15.9632 16.8554 REMARK 3 T TENSOR REMARK 3 T11: 0.2274 T22: 0.2099 REMARK 3 T33: 0.2880 T12: 0.0051 REMARK 3 T13: 0.0288 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 0.4213 L22: 0.1500 REMARK 3 L33: 0.4228 L12: 0.0516 REMARK 3 L13: 0.2494 L23: 0.1243 REMARK 3 S TENSOR REMARK 3 S11: -0.0091 S12: 0.0074 S13: -0.0887 REMARK 3 S21: -0.0056 S22: -0.0061 S23: -0.0214 REMARK 3 S31: 0.0150 S32: -0.0016 S33: 0.0103 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID 102 THROUGH 114 OR REMARK 3 RESID 116 THROUGH 158 OR RESID 160 REMARK 3 THROUGH 161 OR RESID 163 THROUGH 291)) REMARK 3 SELECTION : (CHAIN 'B' AND (RESID 102 THROUGH 114 OR REMARK 3 RESID 116 THROUGH 158 OR RESID 160 REMARK 3 THROUGH 161 OR RESID 163 THROUGH 291)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID 102 THROUGH 114 OR REMARK 3 RESID 116 THROUGH 158 OR RESID 160 REMARK 3 THROUGH 161 OR RESID 163 THROUGH 291)) REMARK 3 SELECTION : (CHAIN 'C' AND (RESID 102 THROUGH 114 OR REMARK 3 RESID 116 THROUGH 158 OR RESID 160 REMARK 3 THROUGH 161 OR RESID 163 THROUGH 291)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID 102 THROUGH 114 OR REMARK 3 RESID 116 THROUGH 158 OR RESID 160 REMARK 3 THROUGH 161 OR RESID 163 THROUGH 291)) REMARK 3 SELECTION : (CHAIN 'D' AND (RESID 102 THROUGH 114 OR REMARK 3 RESID 116 THROUGH 158 OR RESID 160 REMARK 3 THROUGH 161 OR RESID 163 THROUGH 291)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7VA1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1300024301. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97921 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85574 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 47.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.77 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.62100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2G76 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM CHLORIDE DIHYDRATE 0.1 M REMARK 280 TRIS 8.0 20 %(W/V) PEG 6000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 56.26000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 94 REMARK 465 SER B 95 REMARK 465 MET B 96 REMARK 465 ASN B 97 REMARK 465 THR B 98 REMARK 465 PRO B 99 REMARK 465 ASN B 100 REMARK 465 GLY B 101 REMARK 465 GLN B 292 REMARK 465 SER B 293 REMARK 465 ARG B 294 REMARK 465 CYS B 295 REMARK 465 GLY B 296 REMARK 465 GLU B 297 REMARK 465 GLU B 298 REMARK 465 ILE B 299 REMARK 465 ALA B 300 REMARK 465 VAL B 301 REMARK 465 GLN B 302 REMARK 465 PHE B 303 REMARK 465 VAL B 304 REMARK 465 ASP B 305 REMARK 465 MET B 306 REMARK 465 VAL B 307 REMARK 465 GLY A 94 REMARK 465 SER A 95 REMARK 465 MET A 96 REMARK 465 ASN A 97 REMARK 465 THR A 98 REMARK 465 PRO A 99 REMARK 465 ASN A 100 REMARK 465 GLY A 101 REMARK 465 CYS A 295 REMARK 465 GLY A 296 REMARK 465 GLU A 297 REMARK 465 GLU A 298 REMARK 465 ILE A 299 REMARK 465 ALA A 300 REMARK 465 VAL A 301 REMARK 465 GLN A 302 REMARK 465 PHE A 303 REMARK 465 VAL A 304 REMARK 465 ASP A 305 REMARK 465 MET A 306 REMARK 465 VAL A 307 REMARK 465 GLY C 94 REMARK 465 SER C 95 REMARK 465 MET C 96 REMARK 465 ASN C 97 REMARK 465 THR C 98 REMARK 465 PRO C 99 REMARK 465 ASN C 100 REMARK 465 GLY C 101 REMARK 465 ARG C 294 REMARK 465 CYS C 295 REMARK 465 GLY C 296 REMARK 465 GLU C 297 REMARK 465 GLU C 298 REMARK 465 ILE C 299 REMARK 465 ALA C 300 REMARK 465 VAL C 301 REMARK 465 GLN C 302 REMARK 465 PHE C 303 REMARK 465 VAL C 304 REMARK 465 ASP C 305 REMARK 465 MET C 306 REMARK 465 VAL C 307 REMARK 465 GLY D 94 REMARK 465 SER D 95 REMARK 465 MET D 96 REMARK 465 ASN D 97 REMARK 465 THR D 98 REMARK 465 PRO D 99 REMARK 465 ASN D 100 REMARK 465 GLY D 101 REMARK 465 GLN D 292 REMARK 465 SER D 293 REMARK 465 ARG D 294 REMARK 465 CYS D 295 REMARK 465 GLY D 296 REMARK 465 GLU D 297 REMARK 465 GLU D 298 REMARK 465 ILE D 299 REMARK 465 ALA D 300 REMARK 465 VAL D 301 REMARK 465 GLN D 302 REMARK 465 PHE D 303 REMARK 465 VAL D 304 REMARK 465 ASP D 305 REMARK 465 MET D 306 REMARK 465 VAL D 307 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 584 O HOH A 588 2.14 REMARK 500 O HOH C 512 O HOH C 567 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 134 72.52 -110.46 REMARK 500 HIS B 206 39.96 -144.16 REMARK 500 ALA B 235 -83.01 -104.75 REMARK 500 GLU A 134 74.23 -111.06 REMARK 500 HIS A 206 41.89 -143.24 REMARK 500 ALA A 235 -84.38 -103.72 REMARK 500 GLU C 134 74.47 -110.08 REMARK 500 HIS C 206 42.11 -142.83 REMARK 500 ALA C 235 -84.35 -104.23 REMARK 500 GLU D 134 75.03 -110.36 REMARK 500 HIS D 206 40.18 -142.58 REMARK 500 ALA D 235 -82.83 -103.33 REMARK 500 REMARK 500 REMARK: NULL DBREF 7VA1 B 96 307 UNP O43175 SERA_HUMAN 96 307 DBREF 7VA1 A 96 307 UNP O43175 SERA_HUMAN 96 307 DBREF 7VA1 C 96 307 UNP O43175 SERA_HUMAN 96 307 DBREF 7VA1 D 96 307 UNP O43175 SERA_HUMAN 96 307 SEQADV 7VA1 GLY B 94 UNP O43175 EXPRESSION TAG SEQADV 7VA1 SER B 95 UNP O43175 EXPRESSION TAG SEQADV 7VA1 GLY A 94 UNP O43175 EXPRESSION TAG SEQADV 7VA1 SER A 95 UNP O43175 EXPRESSION TAG SEQADV 7VA1 GLY C 94 UNP O43175 EXPRESSION TAG SEQADV 7VA1 SER C 95 UNP O43175 EXPRESSION TAG SEQADV 7VA1 GLY D 94 UNP O43175 EXPRESSION TAG SEQADV 7VA1 SER D 95 UNP O43175 EXPRESSION TAG SEQRES 1 B 214 GLY SER MET ASN THR PRO ASN GLY ASN SER LEU SER ALA SEQRES 2 B 214 ALA GLU LEU THR CYS GLY MET ILE MET CYS LEU ALA ARG SEQRES 3 B 214 GLN ILE PRO GLN ALA THR ALA SER MET LYS ASP GLY LYS SEQRES 4 B 214 TRP GLU ARG LYS LYS PHE MET GLY THR GLU LEU ASN GLY SEQRES 5 B 214 LYS THR LEU GLY ILE LEU GLY LEU GLY ARG ILE GLY ARG SEQRES 6 B 214 GLU VAL ALA THR ARG MET GLN SER PHE GLY MET LYS THR SEQRES 7 B 214 ILE GLY TYR ASP PRO ILE ILE SER PRO GLU VAL SER ALA SEQRES 8 B 214 SER PHE GLY VAL GLN GLN LEU PRO LEU GLU GLU ILE TRP SEQRES 9 B 214 PRO LEU CYS ASP PHE ILE THR VAL HIS THR PRO LEU LEU SEQRES 10 B 214 PRO SER THR THR GLY LEU LEU ASN ASP ASN THR PHE ALA SEQRES 11 B 214 GLN CYS LYS LYS GLY VAL ARG VAL VAL ASN CYS ALA ARG SEQRES 12 B 214 GLY GLY ILE VAL ASP GLU GLY ALA LEU LEU ARG ALA LEU SEQRES 13 B 214 GLN SER GLY GLN CYS ALA GLY ALA ALA LEU ASP VAL PHE SEQRES 14 B 214 THR GLU GLU PRO PRO ARG ASP ARG ALA LEU VAL ASP HIS SEQRES 15 B 214 GLU ASN VAL ILE SER CYS PRO HIS LEU GLY ALA SER THR SEQRES 16 B 214 LYS GLU ALA GLN SER ARG CYS GLY GLU GLU ILE ALA VAL SEQRES 17 B 214 GLN PHE VAL ASP MET VAL SEQRES 1 A 214 GLY SER MET ASN THR PRO ASN GLY ASN SER LEU SER ALA SEQRES 2 A 214 ALA GLU LEU THR CYS GLY MET ILE MET CYS LEU ALA ARG SEQRES 3 A 214 GLN ILE PRO GLN ALA THR ALA SER MET LYS ASP GLY LYS SEQRES 4 A 214 TRP GLU ARG LYS LYS PHE MET GLY THR GLU LEU ASN GLY SEQRES 5 A 214 LYS THR LEU GLY ILE LEU GLY LEU GLY ARG ILE GLY ARG SEQRES 6 A 214 GLU VAL ALA THR ARG MET GLN SER PHE GLY MET LYS THR SEQRES 7 A 214 ILE GLY TYR ASP PRO ILE ILE SER PRO GLU VAL SER ALA SEQRES 8 A 214 SER PHE GLY VAL GLN GLN LEU PRO LEU GLU GLU ILE TRP SEQRES 9 A 214 PRO LEU CYS ASP PHE ILE THR VAL HIS THR PRO LEU LEU SEQRES 10 A 214 PRO SER THR THR GLY LEU LEU ASN ASP ASN THR PHE ALA SEQRES 11 A 214 GLN CYS LYS LYS GLY VAL ARG VAL VAL ASN CYS ALA ARG SEQRES 12 A 214 GLY GLY ILE VAL ASP GLU GLY ALA LEU LEU ARG ALA LEU SEQRES 13 A 214 GLN SER GLY GLN CYS ALA GLY ALA ALA LEU ASP VAL PHE SEQRES 14 A 214 THR GLU GLU PRO PRO ARG ASP ARG ALA LEU VAL ASP HIS SEQRES 15 A 214 GLU ASN VAL ILE SER CYS PRO HIS LEU GLY ALA SER THR SEQRES 16 A 214 LYS GLU ALA GLN SER ARG CYS GLY GLU GLU ILE ALA VAL SEQRES 17 A 214 GLN PHE VAL ASP MET VAL SEQRES 1 C 214 GLY SER MET ASN THR PRO ASN GLY ASN SER LEU SER ALA SEQRES 2 C 214 ALA GLU LEU THR CYS GLY MET ILE MET CYS LEU ALA ARG SEQRES 3 C 214 GLN ILE PRO GLN ALA THR ALA SER MET LYS ASP GLY LYS SEQRES 4 C 214 TRP GLU ARG LYS LYS PHE MET GLY THR GLU LEU ASN GLY SEQRES 5 C 214 LYS THR LEU GLY ILE LEU GLY LEU GLY ARG ILE GLY ARG SEQRES 6 C 214 GLU VAL ALA THR ARG MET GLN SER PHE GLY MET LYS THR SEQRES 7 C 214 ILE GLY TYR ASP PRO ILE ILE SER PRO GLU VAL SER ALA SEQRES 8 C 214 SER PHE GLY VAL GLN GLN LEU PRO LEU GLU GLU ILE TRP SEQRES 9 C 214 PRO LEU CYS ASP PHE ILE THR VAL HIS THR PRO LEU LEU SEQRES 10 C 214 PRO SER THR THR GLY LEU LEU ASN ASP ASN THR PHE ALA SEQRES 11 C 214 GLN CYS LYS LYS GLY VAL ARG VAL VAL ASN CYS ALA ARG SEQRES 12 C 214 GLY GLY ILE VAL ASP GLU GLY ALA LEU LEU ARG ALA LEU SEQRES 13 C 214 GLN SER GLY GLN CYS ALA GLY ALA ALA LEU ASP VAL PHE SEQRES 14 C 214 THR GLU GLU PRO PRO ARG ASP ARG ALA LEU VAL ASP HIS SEQRES 15 C 214 GLU ASN VAL ILE SER CYS PRO HIS LEU GLY ALA SER THR SEQRES 16 C 214 LYS GLU ALA GLN SER ARG CYS GLY GLU GLU ILE ALA VAL SEQRES 17 C 214 GLN PHE VAL ASP MET VAL SEQRES 1 D 214 GLY SER MET ASN THR PRO ASN GLY ASN SER LEU SER ALA SEQRES 2 D 214 ALA GLU LEU THR CYS GLY MET ILE MET CYS LEU ALA ARG SEQRES 3 D 214 GLN ILE PRO GLN ALA THR ALA SER MET LYS ASP GLY LYS SEQRES 4 D 214 TRP GLU ARG LYS LYS PHE MET GLY THR GLU LEU ASN GLY SEQRES 5 D 214 LYS THR LEU GLY ILE LEU GLY LEU GLY ARG ILE GLY ARG SEQRES 6 D 214 GLU VAL ALA THR ARG MET GLN SER PHE GLY MET LYS THR SEQRES 7 D 214 ILE GLY TYR ASP PRO ILE ILE SER PRO GLU VAL SER ALA SEQRES 8 D 214 SER PHE GLY VAL GLN GLN LEU PRO LEU GLU GLU ILE TRP SEQRES 9 D 214 PRO LEU CYS ASP PHE ILE THR VAL HIS THR PRO LEU LEU SEQRES 10 D 214 PRO SER THR THR GLY LEU LEU ASN ASP ASN THR PHE ALA SEQRES 11 D 214 GLN CYS LYS LYS GLY VAL ARG VAL VAL ASN CYS ALA ARG SEQRES 12 D 214 GLY GLY ILE VAL ASP GLU GLY ALA LEU LEU ARG ALA LEU SEQRES 13 D 214 GLN SER GLY GLN CYS ALA GLY ALA ALA LEU ASP VAL PHE SEQRES 14 D 214 THR GLU GLU PRO PRO ARG ASP ARG ALA LEU VAL ASP HIS SEQRES 15 D 214 GLU ASN VAL ILE SER CYS PRO HIS LEU GLY ALA SER THR SEQRES 16 D 214 LYS GLU ALA GLN SER ARG CYS GLY GLU GLU ILE ALA VAL SEQRES 17 D 214 GLN PHE VAL ASP MET VAL HET 5YP B 401 34 HET 5YP A 401 34 HET 5YP C 401 34 HET 5YP D 401 34 HETNAM 5YP 4-[(3-ETHANOYLPHENYL)SULFAMOYL]-~{N}-[4-(3- HETNAM 2 5YP FLUOROPHENYL)-1,3-THIAZOL-2-YL]BENZAMIDE FORMUL 5 5YP 4(C24 H18 F N3 O4 S2) FORMUL 9 HOH *382(H2 O) HELIX 1 AA1 ASN B 102 GLN B 120 1 19 HELIX 2 AA2 GLN B 120 ASP B 130 1 11 HELIX 3 AA3 GLY B 154 SER B 166 1 13 HELIX 4 AA4 SER B 179 PHE B 186 1 8 HELIX 5 AA5 PRO B 192 TRP B 197 1 6 HELIX 6 AA6 PRO B 198 CYS B 200 5 3 HELIX 7 AA7 LEU B 210 THR B 214 5 5 HELIX 8 AA8 ASN B 218 CYS B 225 1 8 HELIX 9 AA9 ASP B 241 GLY B 252 1 12 HELIX 10 AB1 ARG B 270 HIS B 275 1 6 HELIX 11 AB2 SER A 103 GLN A 120 1 18 HELIX 12 AB3 GLN A 120 ASP A 130 1 11 HELIX 13 AB4 GLY A 154 SER A 166 1 13 HELIX 14 AB5 SER A 179 PHE A 186 1 8 HELIX 15 AB6 PRO A 192 TRP A 197 1 6 HELIX 16 AB7 PRO A 198 CYS A 200 5 3 HELIX 17 AB8 ASN A 218 CYS A 225 1 8 HELIX 18 AB9 ASP A 241 GLY A 252 1 12 HELIX 19 AC1 ARG A 270 HIS A 275 1 6 HELIX 20 AC2 THR A 288 ARG A 294 1 7 HELIX 21 AC3 SER C 103 GLN C 120 1 18 HELIX 22 AC4 GLN C 120 ASP C 130 1 11 HELIX 23 AC5 GLY C 154 SER C 166 1 13 HELIX 24 AC6 SER C 179 PHE C 186 1 8 HELIX 25 AC7 PRO C 192 TRP C 197 1 6 HELIX 26 AC8 PRO C 198 CYS C 200 5 3 HELIX 27 AC9 ASN C 218 CYS C 225 1 8 HELIX 28 AD1 ASP C 241 GLY C 252 1 12 HELIX 29 AD2 ARG C 270 HIS C 275 1 6 HELIX 30 AD3 LYS C 289 SER C 293 5 5 HELIX 31 AD4 SER D 103 GLN D 120 1 18 HELIX 32 AD5 GLN D 120 ASP D 130 1 11 HELIX 33 AD6 ARG D 135 MET D 139 5 5 HELIX 34 AD7 GLY D 154 SER D 166 1 13 HELIX 35 AD8 SER D 179 PHE D 186 1 8 HELIX 36 AD9 PRO D 192 TRP D 197 1 6 HELIX 37 AE1 PRO D 198 CYS D 200 5 3 HELIX 38 AE2 ASN D 218 CYS D 225 1 8 HELIX 39 AE3 ASP D 241 GLY D 252 1 12 HELIX 40 AE4 ARG D 270 HIS D 275 1 6 SHEET 1 AA1 7 GLN B 189 GLN B 190 0 SHEET 2 AA1 7 LYS B 170 TYR B 174 1 N GLY B 173 O GLN B 189 SHEET 3 AA1 7 THR B 147 LEU B 151 1 N LEU B 148 O LYS B 170 SHEET 4 AA1 7 PHE B 202 VAL B 205 1 O PHE B 202 N GLY B 149 SHEET 5 AA1 7 ARG B 230 ASN B 233 1 O VAL B 232 N ILE B 203 SHEET 6 AA1 7 GLY B 256 LEU B 259 1 O ALA B 258 N ASN B 233 SHEET 7 AA1 7 VAL B 278 SER B 280 1 O ILE B 279 N LEU B 259 SHEET 1 AA2 7 GLN A 189 GLN A 190 0 SHEET 2 AA2 7 LYS A 170 TYR A 174 1 N GLY A 173 O GLN A 189 SHEET 3 AA2 7 THR A 147 LEU A 151 1 N LEU A 148 O LYS A 170 SHEET 4 AA2 7 PHE A 202 VAL A 205 1 O PHE A 202 N GLY A 149 SHEET 5 AA2 7 ARG A 230 ASN A 233 1 O VAL A 232 N ILE A 203 SHEET 6 AA2 7 GLY A 256 LEU A 259 1 O ALA A 258 N ASN A 233 SHEET 7 AA2 7 VAL A 278 SER A 280 1 O ILE A 279 N LEU A 259 SHEET 1 AA3 7 GLN C 189 GLN C 190 0 SHEET 2 AA3 7 LYS C 170 TYR C 174 1 N GLY C 173 O GLN C 189 SHEET 3 AA3 7 THR C 147 LEU C 151 1 N LEU C 148 O LYS C 170 SHEET 4 AA3 7 PHE C 202 VAL C 205 1 O PHE C 202 N GLY C 149 SHEET 5 AA3 7 ARG C 230 ASN C 233 1 O VAL C 232 N ILE C 203 SHEET 6 AA3 7 GLY C 256 LEU C 259 1 O ALA C 258 N ASN C 233 SHEET 7 AA3 7 VAL C 278 SER C 280 1 O ILE C 279 N LEU C 259 SHEET 1 AA4 7 GLN D 189 GLN D 190 0 SHEET 2 AA4 7 LYS D 170 TYR D 174 1 N THR D 171 O GLN D 189 SHEET 3 AA4 7 THR D 147 LEU D 151 1 N LEU D 148 O LYS D 170 SHEET 4 AA4 7 PHE D 202 VAL D 205 1 O PHE D 202 N GLY D 149 SHEET 5 AA4 7 ARG D 230 ASN D 233 1 O VAL D 232 N ILE D 203 SHEET 6 AA4 7 GLY D 256 LEU D 259 1 O ALA D 258 N VAL D 231 SHEET 7 AA4 7 VAL D 278 SER D 280 1 O ILE D 279 N LEU D 259 CISPEP 1 GLU B 265 PRO B 266 0 -5.33 CISPEP 2 GLU A 265 PRO A 266 0 -6.32 CISPEP 3 GLU C 265 PRO C 266 0 -5.34 CISPEP 4 GLU D 265 PRO D 266 0 -5.65 CRYST1 43.410 112.520 87.520 90.00 92.36 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023036 0.000000 0.000949 0.00000 SCALE2 0.000000 0.008887 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011436 0.00000