HEADER LIGASE/LIGASE INHIBITOR 01-SEP-21 7VC1 TITLE TOXOPLASMA GONDII PROLYL-TRNA SYNTHETASE (TGPRS) IN COMPLEX WITH TITLE 2 INHIBITOR L95 AND L-PROLINE IN SPACE GROUP P21 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLYL-TRNA SYNTHETASE (PRORS); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOXOPLASMA GONDII; SOURCE 3 ORGANISM_TAXID: 5811; SOURCE 4 GENE: TGRH88_057780; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN TRANSLATION, INHIBITOR, PRS, ATP POCKET, LIGASE, LIGASE- KEYWDS 2 LIGASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.YOGAVEL,N.MALHOTRA,A.SHARMA REVDAT 3 29-NOV-23 7VC1 1 REMARK REVDAT 2 22-MAR-23 7VC1 1 AUTHOR JRNL REVDAT 1 07-SEP-22 7VC1 0 JRNL AUTH M.YOGAVEL,A.BOUGDOUR,S.MISHRA,N.MALHOTRA,J.CHHIBBER-GOEL, JRNL AUTH 2 V.BELLINI,K.HARLOS,B.LALEU,M.A.HAKIMI,A.SHARMA JRNL TITL TARGETING PROLYL-TRNA SYNTHETASE VIA A SERIES OF JRNL TITL 2 ATP-MIMETICS TO ACCELERATE DRUG DISCOVERY AGAINST JRNL TITL 3 TOXOPLASMOSIS. JRNL REF PLOS PATHOG. V. 19 11124 2023 JRNL REFN ESSN 1553-7374 JRNL PMID 36854028 JRNL DOI 10.1371/JOURNAL.PPAT.1011124 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15RC1_3423 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 100697 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5035 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.2870 - 5.8742 1.00 3303 175 0.1705 0.1917 REMARK 3 2 5.8742 - 4.6639 1.00 3263 171 0.1466 0.1655 REMARK 3 3 4.6639 - 4.0747 1.00 3227 170 0.1299 0.1698 REMARK 3 4 4.0747 - 3.7023 1.00 3203 169 0.1514 0.1894 REMARK 3 5 3.7023 - 3.4370 1.00 3245 170 0.1581 0.2175 REMARK 3 6 3.4370 - 3.2344 1.00 3191 168 0.1672 0.1958 REMARK 3 7 3.2344 - 3.0725 1.00 3201 169 0.1680 0.1961 REMARK 3 8 3.0725 - 2.9388 1.00 3213 169 0.1758 0.2047 REMARK 3 9 2.9388 - 2.8256 1.00 3180 167 0.1775 0.2277 REMARK 3 10 2.8256 - 2.7282 1.00 3206 169 0.1755 0.2274 REMARK 3 11 2.7282 - 2.6429 1.00 3210 169 0.1776 0.2104 REMARK 3 12 2.6429 - 2.5673 1.00 3181 168 0.1825 0.2251 REMARK 3 13 2.5673 - 2.4997 1.00 3211 168 0.1844 0.2169 REMARK 3 14 2.4997 - 2.4388 1.00 3192 168 0.1815 0.2366 REMARK 3 15 2.4388 - 2.3833 1.00 3185 168 0.1928 0.2374 REMARK 3 16 2.3833 - 2.3326 1.00 3181 168 0.1838 0.2356 REMARK 3 17 2.3326 - 2.2859 1.00 3200 168 0.1881 0.2276 REMARK 3 18 2.2859 - 2.2428 1.00 3213 169 0.1887 0.2553 REMARK 3 19 2.2428 - 2.2027 1.00 3145 166 0.1955 0.2607 REMARK 3 20 2.2027 - 2.1654 1.00 3231 170 0.1938 0.2254 REMARK 3 21 2.1654 - 2.1305 1.00 3173 167 0.1932 0.2289 REMARK 3 22 2.1305 - 2.0977 1.00 3186 166 0.2118 0.2639 REMARK 3 23 2.0977 - 2.0668 1.00 3192 168 0.2155 0.2470 REMARK 3 24 2.0668 - 2.0377 1.00 3180 166 0.2291 0.2681 REMARK 3 25 2.0377 - 2.0102 1.00 3172 168 0.2549 0.2945 REMARK 3 26 2.0102 - 1.9841 1.00 3174 167 0.2641 0.2577 REMARK 3 27 1.9841 - 1.9593 1.00 3210 169 0.2608 0.2987 REMARK 3 28 1.9593 - 1.9357 1.00 3160 167 0.2837 0.3126 REMARK 3 29 1.9357 - 1.9132 1.00 3176 167 0.2986 0.3612 REMARK 3 30 1.9132 - 1.8920 0.90 2858 151 0.3102 0.3452 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 14.5610 0.7591 34.1886 REMARK 3 T TENSOR REMARK 3 T11: 0.1845 T22: 0.1802 REMARK 3 T33: 0.2388 T12: -0.0133 REMARK 3 T13: -0.0173 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.5202 L22: 0.3945 REMARK 3 L33: 0.5748 L12: 0.0447 REMARK 3 L13: 0.0770 L23: 0.0355 REMARK 3 S TENSOR REMARK 3 S11: 0.0024 S12: 0.0896 S13: -0.0611 REMARK 3 S21: -0.0063 S22: -0.0105 S23: 0.0105 REMARK 3 S31: 0.0506 S32: -0.0391 S33: 0.0105 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7VC1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-SEP-21. REMARK 100 THE DEPOSITION ID IS D_1300024449. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 100749 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 47.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7V8K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M AMINO ACIDS (0.2M DL-GLUTAMIC REMARK 280 ACID MONOHYDRATE, 0.2M DL-ALANINE, 0.2M GLYCINE, 0.2M DL-LYSINE REMARK 280 MONOHYDROCHLORIDE AND 0.2M DL-SERINE), 0.1 M BUFFER (IMIDAZOLE, REMARK 280 MES MONOHYDRATE), 30 % V/V PRECIPITANT (40% V/V ETHYLENE GLYCOL, REMARK 280 20% W/V PEG 8000), PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.90000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 331 REMARK 465 ALA A 332 REMARK 465 LYS A 409 REMARK 465 ASP A 410 REMARK 465 HIS A 411 REMARK 465 VAL A 412 REMARK 465 GLU A 413 REMARK 465 GLY A 414 REMARK 465 PHE A 415 REMARK 465 GLN A 780 REMARK 465 ALA A 781 REMARK 465 ILE A 782 REMARK 465 GLU A 783 REMARK 465 ALA A 784 REMARK 465 GLY A 785 REMARK 465 ASP A 786 REMARK 465 SER A 787 REMARK 465 GLU A 788 REMARK 465 GLN A 789 REMARK 465 GLY B 331 REMARK 465 ALA B 332 REMARK 465 MET B 333 REMARK 465 VAL B 334 REMARK 465 GLU B 408 REMARK 465 LYS B 409 REMARK 465 ASP B 410 REMARK 465 HIS B 411 REMARK 465 ILE B 782 REMARK 465 GLU B 783 REMARK 465 ALA B 784 REMARK 465 GLY B 785 REMARK 465 ASP B 786 REMARK 465 SER B 787 REMARK 465 GLU B 788 REMARK 465 GLN B 789 REMARK 465 VAL B 790 REMARK 465 MET B 791 REMARK 465 THR B 792 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 333 CG SD CE REMARK 470 LYS A 407 CG CD CE NZ REMARK 470 SER A 416 OG REMARK 470 GLU A 418 CG CD OE1 OE2 REMARK 470 SER A 428 OG REMARK 470 GLU A 578 CG CD OE1 OE2 REMARK 470 GLU A 630 CG CD OE1 OE2 REMARK 470 LYS A 684 CG CD CE NZ REMARK 470 LYS A 688 CD CE NZ REMARK 470 ILE A 779 CG1 CG2 CD1 REMARK 470 THR B 335 OG1 CG2 REMARK 470 ASP B 339 CG OD1 OD2 REMARK 470 LYS B 407 CG CD CE NZ REMARK 470 GLU B 413 CG CD OE1 OE2 REMARK 470 PRO B 417 CG CD REMARK 470 LYS B 474 CG CD CE NZ REMARK 470 GLN B 475 CG CD OE1 NE2 REMARK 470 LYS B 628 CG CD CE NZ REMARK 470 ASP B 629 CG OD1 OD2 REMARK 470 ASN B 631 CG OD1 ND2 REMARK 470 LYS B 688 CG CD CE NZ REMARK 470 LYS B 775 CG CD CE NZ REMARK 470 ILE B 779 CG1 CG2 CD1 REMARK 470 GLN B 780 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 340 -73.89 -112.38 REMARK 500 THR A 439 158.21 175.61 REMARK 500 ARG A 453 -33.84 -132.16 REMARK 500 PHE A 479 -52.60 65.54 REMARK 500 LYS A 821 -60.18 -98.70 REMARK 500 GLN B 475 72.79 40.99 REMARK 500 PHE B 479 -21.18 70.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1344 DISTANCE = 7.28 ANGSTROMS DBREF1 7VC1 A 334 830 UNP A0A7J6JUK2_TOXGO DBREF2 7VC1 A A0A7J6JUK2 215 711 DBREF1 7VC1 B 334 830 UNP A0A7J6JUK2_TOXGO DBREF2 7VC1 B A0A7J6JUK2 215 711 SEQADV 7VC1 GLY A 331 UNP A0A7J6JUK EXPRESSION TAG SEQADV 7VC1 ALA A 332 UNP A0A7J6JUK EXPRESSION TAG SEQADV 7VC1 MET A 333 UNP A0A7J6JUK EXPRESSION TAG SEQADV 7VC1 GLY B 331 UNP A0A7J6JUK EXPRESSION TAG SEQADV 7VC1 ALA B 332 UNP A0A7J6JUK EXPRESSION TAG SEQADV 7VC1 MET B 333 UNP A0A7J6JUK EXPRESSION TAG SEQRES 1 A 500 GLY ALA MET VAL THR ALA LYS LYS ASP GLU ASN PHE SER SEQRES 2 A 500 GLU TRP TYR THR GLN ALA ILE VAL ARG SER GLU MET ILE SEQRES 3 A 500 GLU TYR TYR ASP ILE SER GLY CYS TYR ILE MET ARG PRO SEQRES 4 A 500 TRP ALA PHE HIS ILE TRP GLU LYS VAL GLN ARG PHE PHE SEQRES 5 A 500 ASP ASP GLU ILE LYS LYS MET GLY VAL GLU ASN SER TYR SEQRES 6 A 500 PHE PRO MET PHE VAL SER ARG HIS LYS LEU GLU LYS GLU SEQRES 7 A 500 LYS ASP HIS VAL GLU GLY PHE SER PRO GLU VAL ALA TRP SEQRES 8 A 500 VAL THR HIS TYR GLY ASP SER PRO LEU PRO GLU LYS ILE SEQRES 9 A 500 ALA ILE ARG PRO THR SER GLU THR ILE MET TYR PRO ALA SEQRES 10 A 500 TYR ALA LYS TRP ILE ARG SER HIS ARG ASP LEU PRO LEU SEQRES 11 A 500 LYS LEU ASN GLN TRP CYS SER VAL VAL ARG TRP GLU PHE SEQRES 12 A 500 LYS GLN PRO THR PRO PHE LEU ARG THR ARG GLU PHE LEU SEQRES 13 A 500 TRP GLN GLU GLY HIS THR ALA HIS ALA THR GLU GLU GLU SEQRES 14 A 500 ALA TRP GLU LEU VAL LEU ASP ILE LEU GLU LEU TYR ARG SEQRES 15 A 500 ARG TRP TYR GLU GLU CYS LEU ALA VAL PRO VAL ILE LYS SEQRES 16 A 500 GLY GLU LYS SER GLU GLY GLU LYS PHE ALA GLY GLY LYS SEQRES 17 A 500 LYS THR THR THR VAL GLU ALA PHE ILE PRO GLU ASN GLY SEQRES 18 A 500 ARG GLY ILE GLN ALA ALA THR SER HIS LEU LEU GLY THR SEQRES 19 A 500 ASN PHE ALA LYS MET PHE GLU ILE GLU PHE GLU ASP GLU SEQRES 20 A 500 GLU GLY HIS LYS ARG LEU VAL HIS GLN THR SER TRP GLY SEQRES 21 A 500 CYS THR THR ARG SER LEU GLY VAL MET ILE MET THR HIS SEQRES 22 A 500 GLY ASP ASP LYS GLY LEU VAL ILE PRO PRO ARG VAL ALA SEQRES 23 A 500 SER VAL GLN VAL VAL ILE ILE PRO ILE LEU PHE LYS ASP SEQRES 24 A 500 GLU ASN THR GLY GLU ILE LEU GLY LYS CYS ARG GLU LEU SEQRES 25 A 500 LYS THR MET LEU GLU LYS ALA ASP ILE ARG VAL ARG ILE SEQRES 26 A 500 ASP ASP ARG SER ASN TYR THR PRO GLY TRP LYS TYR ASN SEQRES 27 A 500 HIS TRP GLU VAL LYS GLY VAL PRO LEU ARG LEU GLU LEU SEQRES 28 A 500 GLY PRO LYS ASP LEU ALA LYS GLY THR ALA ARG VAL VAL SEQRES 29 A 500 ARG ARG ASP THR GLY GLU ALA TYR GLN ILE SER TRP ALA SEQRES 30 A 500 ASP LEU ALA PRO LYS LEU LEU GLU LEU MET GLU GLY ILE SEQRES 31 A 500 GLN ARG SER LEU PHE GLU LYS ALA LYS ALA ARG LEU HIS SEQRES 32 A 500 GLU GLY ILE GLU LYS ILE SER THR PHE ASP GLU VAL MET SEQRES 33 A 500 PRO ALA LEU ASN ARG LYS HIS LEU VAL LEU ALA PRO TRP SEQRES 34 A 500 CYS GLU ASP PRO GLU SER GLU GLU GLN ILE LYS LYS GLU SEQRES 35 A 500 THR GLN LYS LEU SER GLU ILE GLN ALA ILE GLU ALA GLY SEQRES 36 A 500 ASP SER GLU GLN VAL MET THR GLY ALA MET LYS THR LEU SEQRES 37 A 500 CYS ILE PRO PHE ASP GLN PRO PRO MET PRO GLU GLY THR SEQRES 38 A 500 LYS CYS PHE TYR THR GLY LYS PRO ALA LYS ARG TRP THR SEQRES 39 A 500 LEU TRP GLY ARG SER TYR SEQRES 1 B 500 GLY ALA MET VAL THR ALA LYS LYS ASP GLU ASN PHE SER SEQRES 2 B 500 GLU TRP TYR THR GLN ALA ILE VAL ARG SER GLU MET ILE SEQRES 3 B 500 GLU TYR TYR ASP ILE SER GLY CYS TYR ILE MET ARG PRO SEQRES 4 B 500 TRP ALA PHE HIS ILE TRP GLU LYS VAL GLN ARG PHE PHE SEQRES 5 B 500 ASP ASP GLU ILE LYS LYS MET GLY VAL GLU ASN SER TYR SEQRES 6 B 500 PHE PRO MET PHE VAL SER ARG HIS LYS LEU GLU LYS GLU SEQRES 7 B 500 LYS ASP HIS VAL GLU GLY PHE SER PRO GLU VAL ALA TRP SEQRES 8 B 500 VAL THR HIS TYR GLY ASP SER PRO LEU PRO GLU LYS ILE SEQRES 9 B 500 ALA ILE ARG PRO THR SER GLU THR ILE MET TYR PRO ALA SEQRES 10 B 500 TYR ALA LYS TRP ILE ARG SER HIS ARG ASP LEU PRO LEU SEQRES 11 B 500 LYS LEU ASN GLN TRP CYS SER VAL VAL ARG TRP GLU PHE SEQRES 12 B 500 LYS GLN PRO THR PRO PHE LEU ARG THR ARG GLU PHE LEU SEQRES 13 B 500 TRP GLN GLU GLY HIS THR ALA HIS ALA THR GLU GLU GLU SEQRES 14 B 500 ALA TRP GLU LEU VAL LEU ASP ILE LEU GLU LEU TYR ARG SEQRES 15 B 500 ARG TRP TYR GLU GLU CYS LEU ALA VAL PRO VAL ILE LYS SEQRES 16 B 500 GLY GLU LYS SER GLU GLY GLU LYS PHE ALA GLY GLY LYS SEQRES 17 B 500 LYS THR THR THR VAL GLU ALA PHE ILE PRO GLU ASN GLY SEQRES 18 B 500 ARG GLY ILE GLN ALA ALA THR SER HIS LEU LEU GLY THR SEQRES 19 B 500 ASN PHE ALA LYS MET PHE GLU ILE GLU PHE GLU ASP GLU SEQRES 20 B 500 GLU GLY HIS LYS ARG LEU VAL HIS GLN THR SER TRP GLY SEQRES 21 B 500 CYS THR THR ARG SER LEU GLY VAL MET ILE MET THR HIS SEQRES 22 B 500 GLY ASP ASP LYS GLY LEU VAL ILE PRO PRO ARG VAL ALA SEQRES 23 B 500 SER VAL GLN VAL VAL ILE ILE PRO ILE LEU PHE LYS ASP SEQRES 24 B 500 GLU ASN THR GLY GLU ILE LEU GLY LYS CYS ARG GLU LEU SEQRES 25 B 500 LYS THR MET LEU GLU LYS ALA ASP ILE ARG VAL ARG ILE SEQRES 26 B 500 ASP ASP ARG SER ASN TYR THR PRO GLY TRP LYS TYR ASN SEQRES 27 B 500 HIS TRP GLU VAL LYS GLY VAL PRO LEU ARG LEU GLU LEU SEQRES 28 B 500 GLY PRO LYS ASP LEU ALA LYS GLY THR ALA ARG VAL VAL SEQRES 29 B 500 ARG ARG ASP THR GLY GLU ALA TYR GLN ILE SER TRP ALA SEQRES 30 B 500 ASP LEU ALA PRO LYS LEU LEU GLU LEU MET GLU GLY ILE SEQRES 31 B 500 GLN ARG SER LEU PHE GLU LYS ALA LYS ALA ARG LEU HIS SEQRES 32 B 500 GLU GLY ILE GLU LYS ILE SER THR PHE ASP GLU VAL MET SEQRES 33 B 500 PRO ALA LEU ASN ARG LYS HIS LEU VAL LEU ALA PRO TRP SEQRES 34 B 500 CYS GLU ASP PRO GLU SER GLU GLU GLN ILE LYS LYS GLU SEQRES 35 B 500 THR GLN LYS LEU SER GLU ILE GLN ALA ILE GLU ALA GLY SEQRES 36 B 500 ASP SER GLU GLN VAL MET THR GLY ALA MET LYS THR LEU SEQRES 37 B 500 CYS ILE PRO PHE ASP GLN PRO PRO MET PRO GLU GLY THR SEQRES 38 B 500 LYS CYS PHE TYR THR GLY LYS PRO ALA LYS ARG TRP THR SEQRES 39 B 500 LEU TRP GLY ARG SER TYR HET JE6 A 901 28 HET PRO A 902 8 HET EDO A 903 4 HET EDO A 904 4 HET EDO A 905 4 HET EDO A 906 4 HET EDO A 907 4 HET GOL A 908 6 HET CL A 909 1 HET EDO B 901 4 HET EDO B 902 4 HET EDO B 903 4 HET EDO B 904 4 HET EDO B 905 4 HET GOL B 906 6 HET CL B 907 1 HET CL B 908 1 HET CL B 909 1 HETNAM JE6 ~{N}-[4-[(3~{S})-3-CYANO-3-CYCLOPROPYL-2-OXIDANYLIDENE- HETNAM 2 JE6 PYRROLIDIN-1-YL]-6-METHYL-PYRIDIN-2-YL]-2-PHENYL- HETNAM 3 JE6 ETHANAMIDE HETNAM PRO PROLINE HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 JE6 C22 H22 N4 O2 FORMUL 4 PRO C5 H9 N O2 FORMUL 5 EDO 10(C2 H6 O2) FORMUL 10 GOL 2(C3 H8 O3) FORMUL 11 CL 4(CL 1-) FORMUL 21 HOH *628(H2 O) HELIX 1 AA1 ASN A 341 SER A 353 1 13 HELIX 2 AA2 ARG A 368 MET A 389 1 22 HELIX 3 AA3 ARG A 402 GLU A 408 1 7 HELIX 4 AA4 SER A 440 ILE A 452 1 13 HELIX 5 AA5 SER A 454 LEU A 458 5 5 HELIX 6 AA6 THR A 496 GLU A 517 1 22 HELIX 7 AA7 THR A 564 GLU A 571 1 8 HELIX 8 AA8 THR A 593 GLY A 604 1 12 HELIX 9 AA9 PRO A 612 ALA A 616 5 5 HELIX 10 AB1 ASN A 631 LYS A 648 1 18 HELIX 11 AB2 THR A 662 LYS A 673 1 12 HELIX 12 AB3 GLY A 682 GLY A 689 1 8 HELIX 13 AB4 ASP A 708 GLY A 735 1 28 HELIX 14 AB5 THR A 741 ASP A 743 5 3 HELIX 15 AB6 GLU A 744 ARG A 751 1 8 HELIX 16 AB7 ASP A 762 ILE A 779 1 18 HELIX 17 AB8 ASN B 341 SER B 353 1 13 HELIX 18 AB9 ARG B 368 MET B 389 1 22 HELIX 19 AC1 ARG B 402 LYS B 407 1 6 HELIX 20 AC2 SER B 440 ILE B 452 1 13 HELIX 21 AC3 SER B 454 LEU B 458 5 5 HELIX 22 AC4 THR B 496 CYS B 518 1 23 HELIX 23 AC5 THR B 564 GLU B 571 1 8 HELIX 24 AC6 THR B 593 GLY B 604 1 12 HELIX 25 AC7 GLY B 633 ALA B 649 1 17 HELIX 26 AC8 THR B 662 GLY B 674 1 13 HELIX 27 AC9 GLY B 682 GLY B 689 1 8 HELIX 28 AD1 ASP B 708 GLY B 735 1 28 HELIX 29 AD2 THR B 741 ASP B 743 5 3 HELIX 30 AD3 GLU B 744 ARG B 751 1 8 HELIX 31 AD4 ASP B 762 ALA B 781 1 20 SHEET 1 AA1 2 ILE A 356 GLU A 357 0 SHEET 2 AA1 2 ILE A 366 MET A 367 -1 O ILE A 366 N GLU A 357 SHEET 1 AA211 GLU A 392 ASN A 393 0 SHEET 2 AA211 LEU A 460 VAL A 469 1 O ASN A 463 N GLU A 392 SHEET 3 AA211 GLU A 484 HIS A 494 -1 O HIS A 491 N LEU A 462 SHEET 4 AA211 HIS A 585 THR A 592 -1 O TRP A 589 N GLY A 490 SHEET 5 AA211 ARG A 552 GLY A 563 -1 N HIS A 560 O SER A 588 SHEET 6 AA211 LYS A 539 ILE A 547 -1 N LYS A 539 O LEU A 561 SHEET 7 AA211 ILE A 524 GLU A 527 -1 N GLY A 526 O THR A 542 SHEET 8 AA211 LYS A 796 PRO A 801 -1 O ILE A 800 N GLU A 527 SHEET 9 AA211 ARG A 822 GLY A 827 -1 O LEU A 825 N LEU A 798 SHEET 10 AA211 LEU A 754 TRP A 759 -1 N VAL A 755 O TRP A 826 SHEET 11 AA211 ILE A 736 LYS A 738 1 N GLU A 737 O LEU A 756 SHEET 1 AA3 6 PHE A 399 SER A 401 0 SHEET 2 AA3 6 SER A 428 ILE A 436 -1 O ALA A 435 N VAL A 400 SHEET 3 AA3 6 ALA A 420 TYR A 425 -1 N VAL A 422 O ILE A 434 SHEET 4 AA3 6 ALA B 420 TYR B 425 -1 O TRP B 421 N HIS A 424 SHEET 5 AA3 6 SER B 428 ILE B 436 -1 O ILE B 434 N VAL B 422 SHEET 6 AA3 6 PHE B 399 SER B 401 -1 N VAL B 400 O ALA B 435 SHEET 1 AA4 2 GLU A 573 GLU A 575 0 SHEET 2 AA4 2 LYS A 581 LEU A 583 -1 O ARG A 582 N PHE A 574 SHEET 1 AA5 5 VAL A 653 ILE A 655 0 SHEET 2 AA5 5 VAL A 620 PRO A 624 1 N ILE A 622 O ARG A 654 SHEET 3 AA5 5 LEU A 677 LEU A 681 1 O LEU A 679 N VAL A 621 SHEET 4 AA5 5 THR A 690 ARG A 695 -1 O ARG A 692 N GLU A 680 SHEET 5 AA5 5 ALA A 701 SER A 705 -1 O TYR A 702 N VAL A 693 SHEET 1 AA6 2 ILE B 356 GLU B 357 0 SHEET 2 AA6 2 ILE B 366 MET B 367 -1 O ILE B 366 N GLU B 357 SHEET 1 AA711 GLU B 392 ASN B 393 0 SHEET 2 AA711 LEU B 460 VAL B 469 1 O ASN B 463 N GLU B 392 SHEET 3 AA711 GLU B 484 HIS B 494 -1 O HIS B 491 N LEU B 462 SHEET 4 AA711 HIS B 585 THR B 592 -1 O HIS B 585 N HIS B 494 SHEET 5 AA711 ARG B 552 GLY B 563 -1 N HIS B 560 O SER B 588 SHEET 6 AA711 LYS B 539 ILE B 547 -1 N LYS B 539 O LEU B 561 SHEET 7 AA711 ILE B 524 GLU B 527 -1 N GLY B 526 O THR B 542 SHEET 8 AA711 LYS B 796 PRO B 801 -1 O ILE B 800 N GLU B 527 SHEET 9 AA711 ARG B 822 SER B 829 -1 O LEU B 825 N LEU B 798 SHEET 10 AA711 LEU B 754 TRP B 759 -1 N VAL B 755 O TRP B 826 SHEET 11 AA711 ILE B 736 LYS B 738 1 N GLU B 737 O LEU B 756 SHEET 1 AA8 8 GLU B 392 ASN B 393 0 SHEET 2 AA8 8 LEU B 460 VAL B 469 1 O ASN B 463 N GLU B 392 SHEET 3 AA8 8 GLU B 484 HIS B 494 -1 O HIS B 491 N LEU B 462 SHEET 4 AA8 8 HIS B 585 THR B 592 -1 O HIS B 585 N HIS B 494 SHEET 5 AA8 8 ARG B 552 GLY B 563 -1 N HIS B 560 O SER B 588 SHEET 6 AA8 8 ARG B 822 SER B 829 1 O ARG B 828 N GLY B 553 SHEET 7 AA8 8 LEU B 754 TRP B 759 -1 N VAL B 755 O TRP B 826 SHEET 8 AA8 8 ILE B 736 LYS B 738 1 N GLU B 737 O LEU B 756 SHEET 1 AA9 2 GLU B 573 GLU B 575 0 SHEET 2 AA9 2 LYS B 581 LEU B 583 -1 O ARG B 582 N PHE B 574 SHEET 1 AB1 5 VAL B 653 ILE B 655 0 SHEET 2 AB1 5 VAL B 620 PRO B 624 1 N ILE B 622 O ARG B 654 SHEET 3 AB1 5 LEU B 677 LEU B 681 1 O LEU B 679 N VAL B 621 SHEET 4 AB1 5 THR B 690 ARG B 695 -1 O ARG B 692 N GLU B 680 SHEET 5 AB1 5 ALA B 701 SER B 705 -1 O TYR B 702 N VAL B 693 CISPEP 1 LEU A 458 PRO A 459 0 2.86 CISPEP 2 LEU B 458 PRO B 459 0 -0.46 CRYST1 76.890 81.800 104.660 90.00 102.59 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013006 0.000000 0.002905 0.00000 SCALE2 0.000000 0.012225 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009790 0.00000