HEADER LIGASE/LIGASE INHIBITOR 01-SEP-21 7VC2 TITLE TOXOPLASMA GONDII PROLYL-TRNA SYNTHETASE (TGPRS) IN COMPLEX WITH TITLE 2 INHIBITOR L96 AND L-PROLINE IN SPACE GROUP P21 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLYL-TRNA SYNTHETASE (PRORS); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOXOPLASMA GONDII; SOURCE 3 ORGANISM_TAXID: 5811; SOURCE 4 GENE: TGRH88_057780; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN TRANSLATION, INHIBITOR, PRS, ATP POCKET, LIGASE, LIGASE- KEYWDS 2 LIGASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.YOGAVEL,N.MALHOTRA,A.SHARMA REVDAT 3 29-NOV-23 7VC2 1 REMARK REVDAT 2 22-MAR-23 7VC2 1 AUTHOR JRNL REVDAT 1 07-SEP-22 7VC2 0 JRNL AUTH M.YOGAVEL,A.BOUGDOUR,S.MISHRA,N.MALHOTRA,J.CHHIBBER-GOEL, JRNL AUTH 2 V.BELLINI,K.HARLOS,B.LALEU,M.A.HAKIMI,A.SHARMA JRNL TITL TARGETING PROLYL-TRNA SYNTHETASE VIA A SERIES OF JRNL TITL 2 ATP-MIMETICS TO ACCELERATE DRUG DISCOVERY AGAINST JRNL TITL 3 TOXOPLASMOSIS. JRNL REF PLOS PATHOG. V. 19 11124 2023 JRNL REFN ESSN 1553-7374 JRNL PMID 36854028 JRNL DOI 10.1371/JOURNAL.PPAT.1011124 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15RC1_3423 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 145446 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 7280 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.4200 - 6.5064 1.00 4644 242 0.1600 0.1785 REMARK 3 2 6.5064 - 5.1664 1.00 4614 248 0.1639 0.1989 REMARK 3 3 5.1664 - 4.5139 1.00 4625 242 0.1273 0.1704 REMARK 3 4 4.5139 - 4.1015 1.00 4639 245 0.1373 0.1648 REMARK 3 5 4.1015 - 3.8076 1.00 4664 246 0.1438 0.1852 REMARK 3 6 3.8076 - 3.5832 1.00 4606 244 0.1556 0.1841 REMARK 3 7 3.5832 - 3.4038 1.00 4579 243 0.1656 0.1995 REMARK 3 8 3.4038 - 3.2557 1.00 4712 249 0.1736 0.2321 REMARK 3 9 3.2557 - 3.1304 1.00 4611 243 0.1773 0.2127 REMARK 3 10 3.1304 - 3.0224 1.00 4611 242 0.1793 0.2388 REMARK 3 11 3.0224 - 2.9279 1.00 4624 246 0.1927 0.2479 REMARK 3 12 2.9279 - 2.8442 1.00 4650 250 0.1920 0.2399 REMARK 3 13 2.8442 - 2.7693 1.00 4601 244 0.1898 0.2415 REMARK 3 14 2.7693 - 2.7018 1.00 4648 248 0.1869 0.2545 REMARK 3 15 2.7018 - 2.6404 1.00 4659 241 0.1902 0.2539 REMARK 3 16 2.6404 - 2.5842 1.00 4636 243 0.1942 0.2710 REMARK 3 17 2.5842 - 2.5325 1.00 4601 241 0.2003 0.2716 REMARK 3 18 2.5325 - 2.4847 1.00 4634 243 0.2091 0.2408 REMARK 3 19 2.4847 - 2.4403 1.00 4629 245 0.2105 0.2749 REMARK 3 20 2.4403 - 2.3990 1.00 4626 244 0.2246 0.2652 REMARK 3 21 2.3990 - 2.3603 1.00 4652 242 0.2431 0.2645 REMARK 3 22 2.3603 - 2.3239 1.00 4639 246 0.2448 0.3256 REMARK 3 23 2.3239 - 2.2898 1.00 4636 241 0.2511 0.2947 REMARK 3 24 2.2898 - 2.2575 1.00 4588 243 0.2531 0.2871 REMARK 3 25 2.2575 - 2.2270 1.00 4663 246 0.2707 0.3026 REMARK 3 26 2.2270 - 2.1981 1.00 4604 241 0.2778 0.3233 REMARK 3 27 2.1981 - 2.1706 1.00 4710 245 0.2858 0.3226 REMARK 3 28 2.1706 - 2.1445 1.00 4500 236 0.2806 0.3205 REMARK 3 29 2.1445 - 2.1195 1.00 4720 248 0.2984 0.3832 REMARK 3 30 2.1195 - 2.0960 0.83 3841 203 0.3224 0.3119 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 14.8761 1.0008 33.7923 REMARK 3 T TENSOR REMARK 3 T11: 0.3961 T22: 0.3426 REMARK 3 T33: 0.4143 T12: -0.0278 REMARK 3 T13: -0.0011 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 0.6828 L22: 0.3519 REMARK 3 L33: 1.0596 L12: 0.0199 REMARK 3 L13: -0.0760 L23: 0.1760 REMARK 3 S TENSOR REMARK 3 S11: -0.0257 S12: 0.0757 S13: -0.0761 REMARK 3 S21: 0.0403 S22: -0.0475 S23: 0.0108 REMARK 3 S31: 0.1665 S32: -0.0699 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7VC2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-SEP-21. REMARK 100 THE DEPOSITION ID IS D_1300023118. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 145446 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.096 REMARK 200 RESOLUTION RANGE LOW (A) : 47.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5XIF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.12 M ETHYLENE GLYCOLS (0.3M REMARK 280 DIETHYLENE GLYCOL, 0.3M TRIETHYLENE GLYCOL, 0.3M TETRAETHYLENE REMARK 280 GLYCOL, 0.3M PENTAETHYLENE GLYCOL), 0.1 M BUFFER (IMIDAZOLE; MES REMARK 280 MONOHYDRATE), 30% V/V PRECIPITANT MIX (40% V/V ETHYLENE GLYCOL, REMARK 280 20% W/V PEG 8000), PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.81000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 331 REMARK 465 GLU A 408 REMARK 465 LYS A 409 REMARK 465 ASP A 410 REMARK 465 HIS A 411 REMARK 465 VAL A 412 REMARK 465 GLU A 413 REMARK 465 GLY A 414 REMARK 465 PHE A 415 REMARK 465 SER A 416 REMARK 465 ILE A 779 REMARK 465 GLN A 780 REMARK 465 ALA A 781 REMARK 465 ILE A 782 REMARK 465 GLU A 783 REMARK 465 ALA A 784 REMARK 465 GLY A 785 REMARK 465 ASP A 786 REMARK 465 SER A 787 REMARK 465 GLU A 788 REMARK 465 GLN A 789 REMARK 465 VAL A 790 REMARK 465 GLY B 331 REMARK 465 ALA B 332 REMARK 465 ARG B 402 REMARK 465 HIS B 403 REMARK 465 LYS B 404 REMARK 465 LEU B 405 REMARK 465 GLU B 406 REMARK 465 LYS B 407 REMARK 465 GLU B 408 REMARK 465 LYS B 409 REMARK 465 ASP B 410 REMARK 465 HIS B 411 REMARK 465 VAL B 412 REMARK 465 GLU B 413 REMARK 465 GLY B 414 REMARK 465 PHE B 415 REMARK 465 SER B 416 REMARK 465 PRO B 417 REMARK 465 GLU B 418 REMARK 465 GLU B 432 REMARK 465 LYS B 433 REMARK 465 ILE B 782 REMARK 465 GLU B 783 REMARK 465 ALA B 784 REMARK 465 GLY B 785 REMARK 465 ASP B 786 REMARK 465 SER B 787 REMARK 465 GLU B 788 REMARK 465 GLN B 789 REMARK 465 VAL B 790 REMARK 465 MET B 791 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 333 SD CE REMARK 470 LYS A 404 CD CE NZ REMARK 470 GLU A 406 CG CD OE1 OE2 REMARK 470 LYS A 407 CG CD CE NZ REMARK 470 GLU A 418 CG CD OE1 OE2 REMARK 470 TYR A 425 CE1 CE2 CZ OH REMARK 470 SER A 428 OG REMARK 470 PHE A 473 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 684 CG CD CE NZ REMARK 470 MET A 791 CG SD CE REMARK 470 MET B 333 CG SD CE REMARK 470 SER B 401 OG REMARK 470 HIS B 424 CG ND1 CD2 CE1 NE2 REMARK 470 TYR B 425 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER B 428 OG REMARK 470 LEU B 430 CG CD1 CD2 REMARK 470 ILE B 434 CG1 CG2 CD1 REMARK 470 TRP B 471 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 471 CZ3 CH2 REMARK 470 PHE B 473 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 474 CG CD CE NZ REMARK 470 GLN B 475 CG CD OE1 NE2 REMARK 470 LYS B 568 CG CD CE NZ REMARK 470 GLU B 578 CG CD OE1 OE2 REMARK 470 LYS B 581 CG CD CE NZ REMARK 470 LYS B 628 CG CD CE NZ REMARK 470 LYS B 688 CG CD CE NZ REMARK 470 LYS B 775 CE NZ REMARK 470 ILE B 779 CG1 CG2 CD1 REMARK 470 LYS B 812 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 431 C - N - CA ANGL. DEV. = 11.5 DEGREES REMARK 500 ASP B 576 CB - CA - C ANGL. DEV. = -14.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 340 -61.61 -120.41 REMARK 500 CYS A 466 -166.65 -162.58 REMARK 500 PHE A 479 -48.33 68.15 REMARK 500 ASP A 576 -169.31 -79.55 REMARK 500 LYS A 628 50.31 30.76 REMARK 500 ASN A 660 22.78 -72.13 REMARK 500 THR B 439 153.48 171.83 REMARK 500 PHE B 479 -38.38 70.20 REMARK 500 PHE B 627 -164.15 -103.12 REMARK 500 SER B 740 -31.76 -131.42 REMARK 500 REMARK 500 REMARK: NULL DBREF1 7VC2 A 334 830 UNP A0A7J6JUK2_TOXGO DBREF2 7VC2 A A0A7J6JUK2 215 711 DBREF1 7VC2 B 334 830 UNP A0A7J6JUK2_TOXGO DBREF2 7VC2 B A0A7J6JUK2 215 711 SEQADV 7VC2 GLY A 331 UNP A0A7J6JUK EXPRESSION TAG SEQADV 7VC2 ALA A 332 UNP A0A7J6JUK EXPRESSION TAG SEQADV 7VC2 MET A 333 UNP A0A7J6JUK EXPRESSION TAG SEQADV 7VC2 GLY B 331 UNP A0A7J6JUK EXPRESSION TAG SEQADV 7VC2 ALA B 332 UNP A0A7J6JUK EXPRESSION TAG SEQADV 7VC2 MET B 333 UNP A0A7J6JUK EXPRESSION TAG SEQRES 1 A 500 GLY ALA MET VAL THR ALA LYS LYS ASP GLU ASN PHE SER SEQRES 2 A 500 GLU TRP TYR THR GLN ALA ILE VAL ARG SER GLU MET ILE SEQRES 3 A 500 GLU TYR TYR ASP ILE SER GLY CYS TYR ILE MET ARG PRO SEQRES 4 A 500 TRP ALA PHE HIS ILE TRP GLU LYS VAL GLN ARG PHE PHE SEQRES 5 A 500 ASP ASP GLU ILE LYS LYS MET GLY VAL GLU ASN SER TYR SEQRES 6 A 500 PHE PRO MET PHE VAL SER ARG HIS LYS LEU GLU LYS GLU SEQRES 7 A 500 LYS ASP HIS VAL GLU GLY PHE SER PRO GLU VAL ALA TRP SEQRES 8 A 500 VAL THR HIS TYR GLY ASP SER PRO LEU PRO GLU LYS ILE SEQRES 9 A 500 ALA ILE ARG PRO THR SER GLU THR ILE MET TYR PRO ALA SEQRES 10 A 500 TYR ALA LYS TRP ILE ARG SER HIS ARG ASP LEU PRO LEU SEQRES 11 A 500 LYS LEU ASN GLN TRP CYS SER VAL VAL ARG TRP GLU PHE SEQRES 12 A 500 LYS GLN PRO THR PRO PHE LEU ARG THR ARG GLU PHE LEU SEQRES 13 A 500 TRP GLN GLU GLY HIS THR ALA HIS ALA THR GLU GLU GLU SEQRES 14 A 500 ALA TRP GLU LEU VAL LEU ASP ILE LEU GLU LEU TYR ARG SEQRES 15 A 500 ARG TRP TYR GLU GLU CYS LEU ALA VAL PRO VAL ILE LYS SEQRES 16 A 500 GLY GLU LYS SER GLU GLY GLU LYS PHE ALA GLY GLY LYS SEQRES 17 A 500 LYS THR THR THR VAL GLU ALA PHE ILE PRO GLU ASN GLY SEQRES 18 A 500 ARG GLY ILE GLN ALA ALA THR SER HIS LEU LEU GLY THR SEQRES 19 A 500 ASN PHE ALA LYS MET PHE GLU ILE GLU PHE GLU ASP GLU SEQRES 20 A 500 GLU GLY HIS LYS ARG LEU VAL HIS GLN THR SER TRP GLY SEQRES 21 A 500 CYS THR THR ARG SER LEU GLY VAL MET ILE MET THR HIS SEQRES 22 A 500 GLY ASP ASP LYS GLY LEU VAL ILE PRO PRO ARG VAL ALA SEQRES 23 A 500 SER VAL GLN VAL VAL ILE ILE PRO ILE LEU PHE LYS ASP SEQRES 24 A 500 GLU ASN THR GLY GLU ILE LEU GLY LYS CYS ARG GLU LEU SEQRES 25 A 500 LYS THR MET LEU GLU LYS ALA ASP ILE ARG VAL ARG ILE SEQRES 26 A 500 ASP ASP ARG SER ASN TYR THR PRO GLY TRP LYS TYR ASN SEQRES 27 A 500 HIS TRP GLU VAL LYS GLY VAL PRO LEU ARG LEU GLU LEU SEQRES 28 A 500 GLY PRO LYS ASP LEU ALA LYS GLY THR ALA ARG VAL VAL SEQRES 29 A 500 ARG ARG ASP THR GLY GLU ALA TYR GLN ILE SER TRP ALA SEQRES 30 A 500 ASP LEU ALA PRO LYS LEU LEU GLU LEU MET GLU GLY ILE SEQRES 31 A 500 GLN ARG SER LEU PHE GLU LYS ALA LYS ALA ARG LEU HIS SEQRES 32 A 500 GLU GLY ILE GLU LYS ILE SER THR PHE ASP GLU VAL MET SEQRES 33 A 500 PRO ALA LEU ASN ARG LYS HIS LEU VAL LEU ALA PRO TRP SEQRES 34 A 500 CYS GLU ASP PRO GLU SER GLU GLU GLN ILE LYS LYS GLU SEQRES 35 A 500 THR GLN LYS LEU SER GLU ILE GLN ALA ILE GLU ALA GLY SEQRES 36 A 500 ASP SER GLU GLN VAL MET THR GLY ALA MET LYS THR LEU SEQRES 37 A 500 CYS ILE PRO PHE ASP GLN PRO PRO MET PRO GLU GLY THR SEQRES 38 A 500 LYS CYS PHE TYR THR GLY LYS PRO ALA LYS ARG TRP THR SEQRES 39 A 500 LEU TRP GLY ARG SER TYR SEQRES 1 B 500 GLY ALA MET VAL THR ALA LYS LYS ASP GLU ASN PHE SER SEQRES 2 B 500 GLU TRP TYR THR GLN ALA ILE VAL ARG SER GLU MET ILE SEQRES 3 B 500 GLU TYR TYR ASP ILE SER GLY CYS TYR ILE MET ARG PRO SEQRES 4 B 500 TRP ALA PHE HIS ILE TRP GLU LYS VAL GLN ARG PHE PHE SEQRES 5 B 500 ASP ASP GLU ILE LYS LYS MET GLY VAL GLU ASN SER TYR SEQRES 6 B 500 PHE PRO MET PHE VAL SER ARG HIS LYS LEU GLU LYS GLU SEQRES 7 B 500 LYS ASP HIS VAL GLU GLY PHE SER PRO GLU VAL ALA TRP SEQRES 8 B 500 VAL THR HIS TYR GLY ASP SER PRO LEU PRO GLU LYS ILE SEQRES 9 B 500 ALA ILE ARG PRO THR SER GLU THR ILE MET TYR PRO ALA SEQRES 10 B 500 TYR ALA LYS TRP ILE ARG SER HIS ARG ASP LEU PRO LEU SEQRES 11 B 500 LYS LEU ASN GLN TRP CYS SER VAL VAL ARG TRP GLU PHE SEQRES 12 B 500 LYS GLN PRO THR PRO PHE LEU ARG THR ARG GLU PHE LEU SEQRES 13 B 500 TRP GLN GLU GLY HIS THR ALA HIS ALA THR GLU GLU GLU SEQRES 14 B 500 ALA TRP GLU LEU VAL LEU ASP ILE LEU GLU LEU TYR ARG SEQRES 15 B 500 ARG TRP TYR GLU GLU CYS LEU ALA VAL PRO VAL ILE LYS SEQRES 16 B 500 GLY GLU LYS SER GLU GLY GLU LYS PHE ALA GLY GLY LYS SEQRES 17 B 500 LYS THR THR THR VAL GLU ALA PHE ILE PRO GLU ASN GLY SEQRES 18 B 500 ARG GLY ILE GLN ALA ALA THR SER HIS LEU LEU GLY THR SEQRES 19 B 500 ASN PHE ALA LYS MET PHE GLU ILE GLU PHE GLU ASP GLU SEQRES 20 B 500 GLU GLY HIS LYS ARG LEU VAL HIS GLN THR SER TRP GLY SEQRES 21 B 500 CYS THR THR ARG SER LEU GLY VAL MET ILE MET THR HIS SEQRES 22 B 500 GLY ASP ASP LYS GLY LEU VAL ILE PRO PRO ARG VAL ALA SEQRES 23 B 500 SER VAL GLN VAL VAL ILE ILE PRO ILE LEU PHE LYS ASP SEQRES 24 B 500 GLU ASN THR GLY GLU ILE LEU GLY LYS CYS ARG GLU LEU SEQRES 25 B 500 LYS THR MET LEU GLU LYS ALA ASP ILE ARG VAL ARG ILE SEQRES 26 B 500 ASP ASP ARG SER ASN TYR THR PRO GLY TRP LYS TYR ASN SEQRES 27 B 500 HIS TRP GLU VAL LYS GLY VAL PRO LEU ARG LEU GLU LEU SEQRES 28 B 500 GLY PRO LYS ASP LEU ALA LYS GLY THR ALA ARG VAL VAL SEQRES 29 B 500 ARG ARG ASP THR GLY GLU ALA TYR GLN ILE SER TRP ALA SEQRES 30 B 500 ASP LEU ALA PRO LYS LEU LEU GLU LEU MET GLU GLY ILE SEQRES 31 B 500 GLN ARG SER LEU PHE GLU LYS ALA LYS ALA ARG LEU HIS SEQRES 32 B 500 GLU GLY ILE GLU LYS ILE SER THR PHE ASP GLU VAL MET SEQRES 33 B 500 PRO ALA LEU ASN ARG LYS HIS LEU VAL LEU ALA PRO TRP SEQRES 34 B 500 CYS GLU ASP PRO GLU SER GLU GLU GLN ILE LYS LYS GLU SEQRES 35 B 500 THR GLN LYS LEU SER GLU ILE GLN ALA ILE GLU ALA GLY SEQRES 36 B 500 ASP SER GLU GLN VAL MET THR GLY ALA MET LYS THR LEU SEQRES 37 B 500 CYS ILE PRO PHE ASP GLN PRO PRO MET PRO GLU GLY THR SEQRES 38 B 500 LYS CYS PHE TYR THR GLY LYS PRO ALA LYS ARG TRP THR SEQRES 39 B 500 LEU TRP GLY ARG SER TYR HET 1UI A 901 37 HET PRO A 902 8 HET EDO A 903 4 HET EDO A 904 4 HET EDO A 905 4 HET EDO A 906 4 HET EDO A 907 4 HET 1UI B 901 37 HET PRO B 902 8 HET EDO B 903 4 HET EDO B 904 4 HET EDO B 905 4 HET EDO B 906 4 HET EDO B 907 4 HET EDO B 908 4 HET EDO B 909 4 HET CL B 910 1 HETNAM 1UI 4-[(3S)-3-CYANO-3-CYCLOPROPYL-2-OXIDANYLIDENE- HETNAM 2 1UI PYRROLIDIN-1-YL]-N-[[3-FLUORANYL-5-(5-METHOXYPYRIDIN- HETNAM 3 1UI 3-YL)PHENYL]METHYL]-6-METHYL-PYRIDINE-2-CARBOXAMIDE HETNAM PRO PROLINE HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 1UI 2(C28 H26 F N5 O3) FORMUL 4 PRO 2(C5 H9 N O2) FORMUL 5 EDO 12(C2 H6 O2) FORMUL 19 CL CL 1- FORMUL 20 HOH *416(H2 O) HELIX 1 AA1 ASN A 341 SER A 353 1 13 HELIX 2 AA2 ARG A 368 MET A 389 1 22 HELIX 3 AA3 ARG A 402 GLU A 406 1 5 HELIX 4 AA4 SER A 440 ILE A 452 1 13 HELIX 5 AA5 SER A 454 LEU A 458 5 5 HELIX 6 AA6 THR A 496 GLU A 517 1 22 HELIX 7 AA7 THR A 564 GLU A 571 1 8 HELIX 8 AA8 THR A 593 GLY A 604 1 12 HELIX 9 AA9 PRO A 612 ALA A 616 5 5 HELIX 10 AB1 ASN A 631 LYS A 648 1 18 HELIX 11 AB2 THR A 662 LYS A 673 1 12 HELIX 12 AB3 GLY A 682 GLY A 689 1 8 HELIX 13 AB4 ASP A 708 GLY A 735 1 28 HELIX 14 AB5 THR A 741 ASP A 743 5 3 HELIX 15 AB6 GLU A 744 ARG A 751 1 8 HELIX 16 AB7 ASP A 762 GLU A 778 1 17 HELIX 17 AB8 ASN B 341 SER B 353 1 13 HELIX 18 AB9 ARG B 368 MET B 389 1 22 HELIX 19 AC1 SER B 440 ILE B 452 1 13 HELIX 20 AC2 SER B 454 LEU B 458 5 5 HELIX 21 AC3 THR B 496 CYS B 518 1 23 HELIX 22 AC4 SER B 529 LYS B 533 5 5 HELIX 23 AC5 THR B 564 GLU B 571 1 8 HELIX 24 AC6 THR B 593 GLY B 604 1 12 HELIX 25 AC7 GLY B 633 ALA B 649 1 17 HELIX 26 AC8 THR B 662 GLY B 674 1 13 HELIX 27 AC9 GLY B 682 GLY B 689 1 8 HELIX 28 AD1 ASP B 708 GLY B 735 1 28 HELIX 29 AD2 THR B 741 ASP B 743 5 3 HELIX 30 AD3 GLU B 744 ARG B 751 1 8 HELIX 31 AD4 ASP B 762 ALA B 781 1 20 SHEET 1 AA1 2 ILE A 356 GLU A 357 0 SHEET 2 AA1 2 ILE A 366 MET A 367 -1 O ILE A 366 N GLU A 357 SHEET 1 AA211 GLU A 392 ASN A 393 0 SHEET 2 AA211 LEU A 460 VAL A 469 1 O LYS A 461 N GLU A 392 SHEET 3 AA211 GLU A 484 HIS A 494 -1 O TRP A 487 N CYS A 466 SHEET 4 AA211 HIS A 585 THR A 592 -1 O TRP A 589 N GLY A 490 SHEET 5 AA211 ARG A 552 GLY A 563 -1 N HIS A 560 O SER A 588 SHEET 6 AA211 LYS A 539 ILE A 547 -1 N LYS A 539 O LEU A 561 SHEET 7 AA211 ILE A 524 GLU A 527 -1 N GLY A 526 O THR A 542 SHEET 8 AA211 LYS A 796 PRO A 801 -1 O ILE A 800 N GLU A 527 SHEET 9 AA211 ARG A 822 GLY A 827 -1 O LEU A 825 N LEU A 798 SHEET 10 AA211 LEU A 754 TRP A 759 -1 N VAL A 755 O TRP A 826 SHEET 11 AA211 ILE A 736 LYS A 738 1 N GLU A 737 O LEU A 754 SHEET 1 AA3 4 PHE A 399 SER A 401 0 SHEET 2 AA3 4 SER A 428 ILE A 436 -1 O ALA A 435 N VAL A 400 SHEET 3 AA3 4 ALA A 420 TYR A 425 -1 N VAL A 422 O ILE A 434 SHEET 4 AA3 4 ALA B 420 TYR B 425 -1 O HIS B 424 N TRP A 421 SHEET 1 AA4 2 GLU A 573 GLU A 575 0 SHEET 2 AA4 2 LYS A 581 LEU A 583 -1 O ARG A 582 N PHE A 574 SHEET 1 AA5 5 VAL A 653 ILE A 655 0 SHEET 2 AA5 5 VAL A 620 PRO A 624 1 N ILE A 622 O ARG A 654 SHEET 3 AA5 5 LEU A 677 LEU A 681 1 O LEU A 679 N ILE A 623 SHEET 4 AA5 5 THR A 690 ARG A 695 -1 O ARG A 692 N GLU A 680 SHEET 5 AA5 5 ALA A 701 SER A 705 -1 O TYR A 702 N VAL A 693 SHEET 1 AA6 2 ILE B 356 GLU B 357 0 SHEET 2 AA6 2 ILE B 366 MET B 367 -1 O ILE B 366 N GLU B 357 SHEET 1 AA711 GLU B 392 ASN B 393 0 SHEET 2 AA711 LEU B 460 VAL B 469 1 O ASN B 463 N GLU B 392 SHEET 3 AA711 GLU B 484 HIS B 494 -1 O HIS B 491 N LEU B 462 SHEET 4 AA711 HIS B 585 THR B 592 -1 O TRP B 589 N GLY B 490 SHEET 5 AA711 ARG B 552 GLY B 563 -1 N HIS B 560 O SER B 588 SHEET 6 AA711 LYS B 539 ILE B 547 -1 N LYS B 539 O LEU B 561 SHEET 7 AA711 ILE B 524 GLU B 527 -1 N GLY B 526 O THR B 542 SHEET 8 AA711 LYS B 796 PRO B 801 -1 O ILE B 800 N GLU B 527 SHEET 9 AA711 ARG B 822 GLY B 827 -1 O LEU B 825 N LEU B 798 SHEET 10 AA711 LEU B 754 TRP B 759 -1 N VAL B 755 O TRP B 826 SHEET 11 AA711 ILE B 736 LYS B 738 1 N GLU B 737 O LEU B 754 SHEET 1 AA8 2 GLU B 573 GLU B 575 0 SHEET 2 AA8 2 LYS B 581 LEU B 583 -1 O ARG B 582 N PHE B 574 SHEET 1 AA9 5 VAL B 653 ILE B 655 0 SHEET 2 AA9 5 VAL B 620 PRO B 624 1 N ILE B 622 O ARG B 654 SHEET 3 AA9 5 LEU B 677 LEU B 681 1 O LEU B 679 N VAL B 621 SHEET 4 AA9 5 THR B 690 ARG B 695 -1 O ARG B 692 N GLU B 680 SHEET 5 AA9 5 ALA B 701 SER B 705 -1 O TYR B 702 N VAL B 693 CISPEP 1 LEU A 458 PRO A 459 0 5.10 CISPEP 2 LEU B 458 PRO B 459 0 -4.21 CRYST1 77.100 81.620 104.880 90.00 102.68 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012970 0.000000 0.002918 0.00000 SCALE2 0.000000 0.012252 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009773 0.00000