HEADER TRANSFERASE 09-SEP-21 7VEL TITLE CRYSTAL STRUCTURE OF PHYTOLACCA AMERICANA UGT3 WITH UDP-2FLUOROGLUCOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.4.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHYTOLACCA AMERICANA; SOURCE 3 ORGANISM_COMMON: AMERICAN POKEWEED; SOURCE 4 ORGANISM_TAXID: 3527; SOURCE 5 GENE: PAGT3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PCOLDI KEYWDS UGT, GLYCOSYLTRANSFERASE, UDP-2FGLC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.MAHARJAN,Y.FUKUDA,T.NAKAYAMA,T.NAKAYAMA,H.HAMADA,S.OZAKI,T.INOUE REVDAT 3 29-NOV-23 7VEL 1 REMARK REVDAT 2 16-MAR-22 7VEL 1 JRNL REVDAT 1 02-MAR-22 7VEL 0 JRNL AUTH R.MAHARJAN,Y.FUKUDA,T.NAKAYAMA,T.NAKAYAMA,H.HAMADA, JRNL AUTH 2 S.I.OZAKI,T.INOUE JRNL TITL STRUCTURAL BASIS FOR SUBSTRATE RECOGNITION IN THE PHYTOLACCA JRNL TITL 2 AMERICANA GLYCOSYLTRANSFERASE PAGT3. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 78 379 2022 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 35234151 JRNL DOI 10.1107/S2059798322000869 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 58908 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2977 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.0500 - 5.9300 0.99 2838 174 0.1666 0.1793 REMARK 3 2 5.9300 - 4.7100 0.99 2734 136 0.1726 0.2183 REMARK 3 3 4.7100 - 4.1200 0.99 2678 174 0.1653 0.2104 REMARK 3 4 4.1100 - 3.7400 1.00 2660 179 0.1859 0.2408 REMARK 3 5 3.7400 - 3.4700 1.00 2685 146 0.2170 0.2383 REMARK 3 6 3.4700 - 3.2700 1.00 2671 147 0.2342 0.2988 REMARK 3 7 3.2700 - 3.1000 1.00 2677 161 0.2430 0.3033 REMARK 3 8 3.1000 - 2.9700 1.00 2681 98 0.2502 0.2677 REMARK 3 9 2.9700 - 2.8500 1.00 2705 113 0.2646 0.3255 REMARK 3 10 2.8500 - 2.7600 1.00 2666 128 0.2546 0.3222 REMARK 3 11 2.7600 - 2.6700 1.00 2673 139 0.2545 0.3516 REMARK 3 12 2.6700 - 2.5900 1.00 2650 130 0.2670 0.3350 REMARK 3 13 2.5900 - 2.5300 1.00 2666 124 0.2635 0.3554 REMARK 3 14 2.5300 - 2.4600 1.00 2649 146 0.2609 0.3039 REMARK 3 15 2.4600 - 2.4100 1.00 2629 150 0.2682 0.3281 REMARK 3 16 2.4100 - 2.3600 1.00 2655 137 0.2644 0.3246 REMARK 3 17 2.3600 - 2.3100 1.00 2654 108 0.2760 0.3109 REMARK 3 18 2.3100 - 2.2700 1.00 2636 146 0.2836 0.3374 REMARK 3 19 2.2700 - 2.2300 1.00 2634 162 0.2855 0.3399 REMARK 3 20 2.2300 - 2.1900 1.00 2631 141 0.2888 0.3481 REMARK 3 21 2.1900 - 2.1500 0.94 2459 138 0.2883 0.3252 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.336 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.823 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.64 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 7472 REMARK 3 ANGLE : 0.743 10105 REMARK 3 CHIRALITY : 0.048 1103 REMARK 3 PLANARITY : 0.004 1271 REMARK 3 DIHEDRAL : 24.157 2742 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND RESID 7 THROUGH 484) REMARK 3 SELECTION : (CHAIN 'B' AND (RESID 7 THROUGH 55 OR REMARK 3 RESID 62 THROUGH 254 OR RESID 271 THROUGH REMARK 3 484)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7VEL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-SEP-21. REMARK 100 THE DEPOSITION ID IS D_1300024395. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58912 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 35.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.9600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.78000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.430 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6LZY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15-0.20 M POTASSIUM ACETATE 20% REMARK 280 (W/V) PEG 3350, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 47.10900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.00450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.92550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.00450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 47.10900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.92550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 ASN A -18 REMARK 465 HIS A -17 REMARK 465 LYS A -16 REMARK 465 VAL A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 LEU A -8 REMARK 465 GLN A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ALA A 3 REMARK 465 GLU A 4 REMARK 465 PRO A 5 REMARK 465 GLN A 6 REMARK 465 MET A 56 REMARK 465 GLY A 57 REMARK 465 LYS A 58 REMARK 465 LYS A 59 REMARK 465 ASN A 60 REMARK 465 GLY A 61 REMARK 465 SER A 255 REMARK 465 THR A 256 REMARK 465 GLU A 257 REMARK 465 ASP A 258 REMARK 465 LYS A 259 REMARK 465 ALA A 260 REMARK 465 GLN A 261 REMARK 465 ARG A 262 REMARK 465 GLY A 263 REMARK 465 LYS A 264 REMARK 465 GLN A 265 REMARK 465 THR A 266 REMARK 465 SER A 267 REMARK 465 ILE A 268 REMARK 465 ASP A 269 REMARK 465 GLU A 270 REMARK 465 ASN A 321 REMARK 465 ASN A 322 REMARK 465 ASN A 323 REMARK 465 ASN A 324 REMARK 465 ASN A 325 REMARK 465 ASP A 326 REMARK 465 ASP A 327 REMARK 465 ASP A 328 REMARK 465 ASP A 329 REMARK 465 ALA A 485 REMARK 465 MET B -19 REMARK 465 ASN B -18 REMARK 465 HIS B -17 REMARK 465 LYS B -16 REMARK 465 VAL B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 LEU B -8 REMARK 465 GLN B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 TYR B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 ALA B 3 REMARK 465 GLU B 4 REMARK 465 PRO B 5 REMARK 465 GLN B 6 REMARK 465 MET B 56 REMARK 465 GLY B 57 REMARK 465 LYS B 58 REMARK 465 LYS B 59 REMARK 465 ASN B 60 REMARK 465 SER B 255 REMARK 465 THR B 256 REMARK 465 GLU B 257 REMARK 465 ASP B 258 REMARK 465 LYS B 259 REMARK 465 ALA B 260 REMARK 465 GLN B 261 REMARK 465 ARG B 262 REMARK 465 GLY B 263 REMARK 465 LYS B 264 REMARK 465 GLN B 265 REMARK 465 THR B 266 REMARK 465 SER B 267 REMARK 465 ILE B 268 REMARK 465 ASP B 269 REMARK 465 ASN B 321 REMARK 465 ASN B 322 REMARK 465 ASN B 323 REMARK 465 ASN B 324 REMARK 465 ASN B 325 REMARK 465 ASP B 326 REMARK 465 ASP B 327 REMARK 465 ASP B 328 REMARK 465 ASP B 329 REMARK 465 ALA B 485 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 127 68.67 -118.97 REMARK 500 ASN A 166 42.21 -90.22 REMARK 500 LEU A 178 -20.78 72.80 REMARK 500 ASP A 193 12.96 -69.95 REMARK 500 LYS A 196 -73.05 -106.61 REMARK 500 LYS A 237 -68.87 -92.16 REMARK 500 SER A 279 31.21 -90.22 REMARK 500 TRP A 333 -9.95 -148.54 REMARK 500 ALA A 393 -134.60 56.83 REMARK 500 ASN A 415 22.20 -141.44 REMARK 500 SER B 62 142.50 72.86 REMARK 500 PHE B 127 68.56 -118.20 REMARK 500 ASN B 166 40.54 -89.57 REMARK 500 LEU B 178 -20.52 73.78 REMARK 500 ASP B 193 13.58 -68.61 REMARK 500 LYS B 196 -73.31 -106.09 REMARK 500 LYS B 237 -69.24 -93.20 REMARK 500 TRP B 333 -9.38 -147.17 REMARK 500 ALA B 393 -135.65 55.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 603 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 238 O REMARK 620 2 O4B A 602 OAM 85.3 REMARK 620 3 O4B A 602 OAO 109.0 61.3 REMARK 620 4 O4B A 602 OAQ 98.7 119.1 60.1 REMARK 620 5 O4B A 602 OAR 89.6 173.7 117.2 58.0 REMARK 620 6 O4B A 602 OAP 73.3 122.1 176.3 117.0 59.5 REMARK 620 7 O4B A 602 OAN 81.4 63.9 122.7 177.0 119.1 60.2 REMARK 620 8 GLU B 238 O 151.8 97.3 96.7 104.3 89.0 81.8 74.8 REMARK 620 N 1 2 3 4 5 6 7 DBREF 7VEL A 1 485 UNP B5MGN9 B5MGN9_PHYAM 1 485 DBREF 7VEL B 1 485 UNP B5MGN9 B5MGN9_PHYAM 1 485 SEQADV 7VEL MET A -19 UNP B5MGN9 INITIATING METHIONINE SEQADV 7VEL ASN A -18 UNP B5MGN9 EXPRESSION TAG SEQADV 7VEL HIS A -17 UNP B5MGN9 EXPRESSION TAG SEQADV 7VEL LYS A -16 UNP B5MGN9 EXPRESSION TAG SEQADV 7VEL VAL A -15 UNP B5MGN9 EXPRESSION TAG SEQADV 7VEL HIS A -14 UNP B5MGN9 EXPRESSION TAG SEQADV 7VEL HIS A -13 UNP B5MGN9 EXPRESSION TAG SEQADV 7VEL HIS A -12 UNP B5MGN9 EXPRESSION TAG SEQADV 7VEL HIS A -11 UNP B5MGN9 EXPRESSION TAG SEQADV 7VEL HIS A -10 UNP B5MGN9 EXPRESSION TAG SEQADV 7VEL HIS A -9 UNP B5MGN9 EXPRESSION TAG SEQADV 7VEL LEU A -8 UNP B5MGN9 EXPRESSION TAG SEQADV 7VEL GLN A -7 UNP B5MGN9 EXPRESSION TAG SEQADV 7VEL GLU A -6 UNP B5MGN9 EXPRESSION TAG SEQADV 7VEL ASN A -5 UNP B5MGN9 EXPRESSION TAG SEQADV 7VEL LEU A -4 UNP B5MGN9 EXPRESSION TAG SEQADV 7VEL TYR A -3 UNP B5MGN9 EXPRESSION TAG SEQADV 7VEL PHE A -2 UNP B5MGN9 EXPRESSION TAG SEQADV 7VEL GLN A -1 UNP B5MGN9 EXPRESSION TAG SEQADV 7VEL GLY A 0 UNP B5MGN9 EXPRESSION TAG SEQADV 7VEL MET B -19 UNP B5MGN9 INITIATING METHIONINE SEQADV 7VEL ASN B -18 UNP B5MGN9 EXPRESSION TAG SEQADV 7VEL HIS B -17 UNP B5MGN9 EXPRESSION TAG SEQADV 7VEL LYS B -16 UNP B5MGN9 EXPRESSION TAG SEQADV 7VEL VAL B -15 UNP B5MGN9 EXPRESSION TAG SEQADV 7VEL HIS B -14 UNP B5MGN9 EXPRESSION TAG SEQADV 7VEL HIS B -13 UNP B5MGN9 EXPRESSION TAG SEQADV 7VEL HIS B -12 UNP B5MGN9 EXPRESSION TAG SEQADV 7VEL HIS B -11 UNP B5MGN9 EXPRESSION TAG SEQADV 7VEL HIS B -10 UNP B5MGN9 EXPRESSION TAG SEQADV 7VEL HIS B -9 UNP B5MGN9 EXPRESSION TAG SEQADV 7VEL LEU B -8 UNP B5MGN9 EXPRESSION TAG SEQADV 7VEL GLN B -7 UNP B5MGN9 EXPRESSION TAG SEQADV 7VEL GLU B -6 UNP B5MGN9 EXPRESSION TAG SEQADV 7VEL ASN B -5 UNP B5MGN9 EXPRESSION TAG SEQADV 7VEL LEU B -4 UNP B5MGN9 EXPRESSION TAG SEQADV 7VEL TYR B -3 UNP B5MGN9 EXPRESSION TAG SEQADV 7VEL PHE B -2 UNP B5MGN9 EXPRESSION TAG SEQADV 7VEL GLN B -1 UNP B5MGN9 EXPRESSION TAG SEQADV 7VEL GLY B 0 UNP B5MGN9 EXPRESSION TAG SEQRES 1 A 505 MET ASN HIS LYS VAL HIS HIS HIS HIS HIS HIS LEU GLN SEQRES 2 A 505 GLU ASN LEU TYR PHE GLN GLY MET GLY ALA GLU PRO GLN SEQRES 3 A 505 GLN LEU HIS VAL VAL PHE PHE PRO ILE MET ALA HIS GLY SEQRES 4 A 505 HIS MET ILE PRO THR LEU ASP ILE ALA ARG LEU PHE ALA SEQRES 5 A 505 ALA ARG ASN VAL ARG ALA THR ILE ILE THR THR PRO LEU SEQRES 6 A 505 ASN ALA HIS THR PHE THR LYS ALA ILE GLU MET GLY LYS SEQRES 7 A 505 LYS ASN GLY SER PRO THR ILE HIS LEU GLU LEU PHE LYS SEQRES 8 A 505 PHE PRO ALA GLN ASP VAL GLY LEU PRO GLU GLY CYS GLU SEQRES 9 A 505 ASN LEU GLU GLN ALA LEU GLY SER SER LEU ILE GLU LYS SEQRES 10 A 505 PHE PHE LYS GLY VAL GLY LEU LEU ARG GLU GLN LEU GLU SEQRES 11 A 505 ALA TYR LEU GLU LYS THR ARG PRO ASN CYS LEU VAL ALA SEQRES 12 A 505 ASP MET PHE PHE PRO TRP ALA THR ASP SER ALA ALA LYS SEQRES 13 A 505 PHE ASN ILE PRO ARG LEU VAL PHE HIS GLY THR SER PHE SEQRES 14 A 505 PHE SER LEU CYS ALA LEU GLU VAL VAL ARG LEU TYR GLU SEQRES 15 A 505 PRO HIS LYS ASN VAL SER SER ASP GLU GLU LEU PHE SER SEQRES 16 A 505 LEU PRO LEU PHE PRO HIS ASP ILE LYS MET MET ARG LEU SEQRES 17 A 505 GLN LEU PRO GLU ASP VAL TRP LYS HIS GLU LYS ALA GLU SEQRES 18 A 505 GLY LYS THR ARG LEU LYS LEU ILE LYS GLU SER GLU LEU SEQRES 19 A 505 LYS SER TYR GLY VAL ILE VAL ASN SER PHE TYR GLU LEU SEQRES 20 A 505 GLU PRO ASN TYR ALA GLU PHE PHE ARG LYS GLU LEU GLY SEQRES 21 A 505 ARG ARG ALA TRP ASN ILE GLY PRO VAL SER LEU CYS ASN SEQRES 22 A 505 ARG SER THR GLU ASP LYS ALA GLN ARG GLY LYS GLN THR SEQRES 23 A 505 SER ILE ASP GLU HIS GLU CYS LEU LYS TRP LEU ASN SER SEQRES 24 A 505 LYS LYS LYS ASN SER VAL ILE TYR ILE CYS PHE GLY SER SEQRES 25 A 505 THR ALA HIS GLN ILE ALA PRO GLN LEU TYR GLU ILE ALA SEQRES 26 A 505 MET ALA LEU GLU ALA SER GLY GLN GLU PHE ILE TRP VAL SEQRES 27 A 505 VAL ARG ASN ASN ASN ASN ASN ASP ASP ASP ASP ASP ASP SEQRES 28 A 505 SER TRP LEU PRO ARG GLY PHE GLU GLN ARG VAL GLU GLY SEQRES 29 A 505 LYS GLY LEU ILE ILE ARG GLY TRP ALA PRO GLN VAL LEU SEQRES 30 A 505 ILE LEU GLU HIS GLU ALA ILE GLY ALA PHE VAL THR HIS SEQRES 31 A 505 CYS GLY TRP ASN SER THR LEU GLU GLY ILE THR ALA GLY SEQRES 32 A 505 VAL PRO MET VAL THR TRP PRO ILE PHE ALA GLU GLN PHE SEQRES 33 A 505 TYR ASN GLU LYS LEU VAL ASN GLN ILE LEU LYS ILE GLY SEQRES 34 A 505 VAL PRO VAL GLY ALA ASN LYS TRP SER ARG GLU THR SER SEQRES 35 A 505 ILE GLU ASP VAL ILE LYS LYS ASP ALA ILE GLU LYS ALA SEQRES 36 A 505 LEU ARG GLU ILE MET VAL GLY ASP GLU ALA GLU GLU ARG SEQRES 37 A 505 ARG SER ARG ALA LYS LYS LEU LYS GLU MET ALA TRP LYS SEQRES 38 A 505 ALA VAL GLU GLU GLY GLY SER SER TYR SER ASP LEU SER SEQRES 39 A 505 ALA LEU ILE GLU GLU LEU ARG GLY TYR HIS ALA SEQRES 1 B 505 MET ASN HIS LYS VAL HIS HIS HIS HIS HIS HIS LEU GLN SEQRES 2 B 505 GLU ASN LEU TYR PHE GLN GLY MET GLY ALA GLU PRO GLN SEQRES 3 B 505 GLN LEU HIS VAL VAL PHE PHE PRO ILE MET ALA HIS GLY SEQRES 4 B 505 HIS MET ILE PRO THR LEU ASP ILE ALA ARG LEU PHE ALA SEQRES 5 B 505 ALA ARG ASN VAL ARG ALA THR ILE ILE THR THR PRO LEU SEQRES 6 B 505 ASN ALA HIS THR PHE THR LYS ALA ILE GLU MET GLY LYS SEQRES 7 B 505 LYS ASN GLY SER PRO THR ILE HIS LEU GLU LEU PHE LYS SEQRES 8 B 505 PHE PRO ALA GLN ASP VAL GLY LEU PRO GLU GLY CYS GLU SEQRES 9 B 505 ASN LEU GLU GLN ALA LEU GLY SER SER LEU ILE GLU LYS SEQRES 10 B 505 PHE PHE LYS GLY VAL GLY LEU LEU ARG GLU GLN LEU GLU SEQRES 11 B 505 ALA TYR LEU GLU LYS THR ARG PRO ASN CYS LEU VAL ALA SEQRES 12 B 505 ASP MET PHE PHE PRO TRP ALA THR ASP SER ALA ALA LYS SEQRES 13 B 505 PHE ASN ILE PRO ARG LEU VAL PHE HIS GLY THR SER PHE SEQRES 14 B 505 PHE SER LEU CYS ALA LEU GLU VAL VAL ARG LEU TYR GLU SEQRES 15 B 505 PRO HIS LYS ASN VAL SER SER ASP GLU GLU LEU PHE SER SEQRES 16 B 505 LEU PRO LEU PHE PRO HIS ASP ILE LYS MET MET ARG LEU SEQRES 17 B 505 GLN LEU PRO GLU ASP VAL TRP LYS HIS GLU LYS ALA GLU SEQRES 18 B 505 GLY LYS THR ARG LEU LYS LEU ILE LYS GLU SER GLU LEU SEQRES 19 B 505 LYS SER TYR GLY VAL ILE VAL ASN SER PHE TYR GLU LEU SEQRES 20 B 505 GLU PRO ASN TYR ALA GLU PHE PHE ARG LYS GLU LEU GLY SEQRES 21 B 505 ARG ARG ALA TRP ASN ILE GLY PRO VAL SER LEU CYS ASN SEQRES 22 B 505 ARG SER THR GLU ASP LYS ALA GLN ARG GLY LYS GLN THR SEQRES 23 B 505 SER ILE ASP GLU HIS GLU CYS LEU LYS TRP LEU ASN SER SEQRES 24 B 505 LYS LYS LYS ASN SER VAL ILE TYR ILE CYS PHE GLY SER SEQRES 25 B 505 THR ALA HIS GLN ILE ALA PRO GLN LEU TYR GLU ILE ALA SEQRES 26 B 505 MET ALA LEU GLU ALA SER GLY GLN GLU PHE ILE TRP VAL SEQRES 27 B 505 VAL ARG ASN ASN ASN ASN ASN ASP ASP ASP ASP ASP ASP SEQRES 28 B 505 SER TRP LEU PRO ARG GLY PHE GLU GLN ARG VAL GLU GLY SEQRES 29 B 505 LYS GLY LEU ILE ILE ARG GLY TRP ALA PRO GLN VAL LEU SEQRES 30 B 505 ILE LEU GLU HIS GLU ALA ILE GLY ALA PHE VAL THR HIS SEQRES 31 B 505 CYS GLY TRP ASN SER THR LEU GLU GLY ILE THR ALA GLY SEQRES 32 B 505 VAL PRO MET VAL THR TRP PRO ILE PHE ALA GLU GLN PHE SEQRES 33 B 505 TYR ASN GLU LYS LEU VAL ASN GLN ILE LEU LYS ILE GLY SEQRES 34 B 505 VAL PRO VAL GLY ALA ASN LYS TRP SER ARG GLU THR SER SEQRES 35 B 505 ILE GLU ASP VAL ILE LYS LYS ASP ALA ILE GLU LYS ALA SEQRES 36 B 505 LEU ARG GLU ILE MET VAL GLY ASP GLU ALA GLU GLU ARG SEQRES 37 B 505 ARG SER ARG ALA LYS LYS LEU LYS GLU MET ALA TRP LYS SEQRES 38 B 505 ALA VAL GLU GLU GLY GLY SER SER TYR SER ASP LEU SER SEQRES 39 B 505 ALA LEU ILE GLU GLU LEU ARG GLY TYR HIS ALA HET EDO A 601 4 HET O4B A 602 18 HET K A 603 1 HET U2F A 604 36 HET U2F B 501 36 HETNAM EDO 1,2-ETHANEDIOL HETNAM O4B 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE HETNAM K POTASSIUM ION HETNAM U2F URIDINE-5'-DIPHOSPHATE-2-DEOXY-2-FLUORO-ALPHA-D-GLUCOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO C2 H6 O2 FORMUL 4 O4B C12 H24 O6 FORMUL 5 K K 1+ FORMUL 6 U2F 2(C15 H23 F N2 O16 P2) FORMUL 8 HOH *164(H2 O) HELIX 1 AA1 ALA A 17 ARG A 34 1 18 HELIX 2 AA2 ASN A 46 GLU A 55 1 10 HELIX 3 AA3 ALA A 74 GLY A 78 5 5 HELIX 4 AA4 ASN A 85 ALA A 89 5 5 HELIX 5 AA5 GLY A 91 LEU A 104 1 14 HELIX 6 AA6 LEU A 105 ARG A 117 1 13 HELIX 7 AA7 TRP A 129 LYS A 136 1 8 HELIX 8 AA8 SER A 148 GLU A 162 1 15 HELIX 9 AA9 PRO A 163 ASN A 166 5 4 HELIX 10 AB1 MET A 186 LEU A 190 5 5 HELIX 11 AB2 PRO A 191 LYS A 196 1 6 HELIX 12 AB3 LYS A 199 SER A 216 1 18 HELIX 13 AB4 PHE A 224 LEU A 227 5 4 HELIX 14 AB5 GLU A 228 LYS A 237 1 10 HELIX 15 AB6 PRO A 248 ASN A 253 5 6 HELIX 16 AB7 GLU A 272 SER A 279 1 8 HELIX 17 AB8 ILE A 297 GLY A 312 1 16 HELIX 18 AB9 GLY A 337 VAL A 342 1 6 HELIX 19 AC1 PRO A 354 GLU A 360 1 7 HELIX 20 AC2 GLY A 372 GLY A 383 1 12 HELIX 21 AC3 GLU A 394 GLN A 404 1 11 HELIX 22 AC4 SER A 422 VAL A 426 5 5 HELIX 23 AC5 LYS A 428 VAL A 441 1 14 HELIX 24 AC6 GLU A 444 GLU A 464 1 21 HELIX 25 AC7 GLY A 467 GLY A 482 1 16 HELIX 26 AC8 ALA B 17 ALA B 33 1 17 HELIX 27 AC9 ASN B 46 GLU B 55 1 10 HELIX 28 AD1 ASN B 85 ALA B 89 5 5 HELIX 29 AD2 GLY B 91 LEU B 104 1 14 HELIX 30 AD3 LEU B 105 ARG B 117 1 13 HELIX 31 AD4 PRO B 128 LYS B 136 1 9 HELIX 32 AD5 SER B 148 GLU B 162 1 15 HELIX 33 AD6 PRO B 163 ASN B 166 5 4 HELIX 34 AD7 LEU B 188 LEU B 190 5 3 HELIX 35 AD8 PRO B 191 LYS B 196 1 6 HELIX 36 AD9 LYS B 199 SER B 216 1 18 HELIX 37 AE1 PHE B 224 LEU B 227 5 4 HELIX 38 AE2 GLU B 228 LYS B 237 1 10 HELIX 39 AE3 PRO B 248 ASN B 253 5 6 HELIX 40 AE4 HIS B 271 SER B 279 1 9 HELIX 41 AE5 ILE B 297 GLY B 312 1 16 HELIX 42 AE6 GLY B 337 VAL B 342 1 6 HELIX 43 AE7 PRO B 354 GLU B 360 1 7 HELIX 44 AE8 GLY B 372 GLY B 383 1 12 HELIX 45 AE9 GLU B 394 ILE B 405 1 12 HELIX 46 AF1 SER B 422 VAL B 426 5 5 HELIX 47 AF2 LYS B 428 GLY B 442 1 15 HELIX 48 AF3 GLU B 444 GLU B 464 1 21 HELIX 49 AF4 GLY B 467 TYR B 483 1 17 SHEET 1 AA1 7 HIS A 66 LEU A 69 0 SHEET 2 AA1 7 ARG A 37 THR A 42 1 N ILE A 40 O HIS A 66 SHEET 3 AA1 7 HIS A 9 PHE A 13 1 N PHE A 12 O THR A 39 SHEET 4 AA1 7 CYS A 120 ASP A 124 1 O VAL A 122 N VAL A 11 SHEET 5 AA1 7 ARG A 141 PHE A 144 1 O LEU A 142 N ALA A 123 SHEET 6 AA1 7 GLY A 218 VAL A 221 1 O ILE A 220 N VAL A 143 SHEET 7 AA1 7 ALA A 243 ASN A 245 1 O TRP A 244 N VAL A 221 SHEET 1 AA2 2 PHE A 174 SER A 175 0 SHEET 2 AA2 2 LYS A 184 MET A 185 -1 O MET A 185 N PHE A 174 SHEET 1 AA3 6 GLY A 346 ILE A 349 0 SHEET 2 AA3 6 GLU A 314 VAL A 318 1 N TRP A 317 O LEU A 347 SHEET 3 AA3 6 VAL A 285 ILE A 288 1 N ILE A 288 O VAL A 318 SHEET 4 AA3 6 ILE A 364 THR A 369 1 O VAL A 368 N TYR A 287 SHEET 5 AA3 6 MET A 386 THR A 388 1 O VAL A 387 N THR A 369 SHEET 6 AA3 6 GLY A 409 PRO A 411 1 O VAL A 410 N THR A 388 SHEET 1 AA4 7 HIS B 66 LEU B 69 0 SHEET 2 AA4 7 ARG B 37 THR B 42 1 N ILE B 40 O HIS B 66 SHEET 3 AA4 7 HIS B 9 PHE B 13 1 N PHE B 12 O THR B 39 SHEET 4 AA4 7 CYS B 120 ASP B 124 1 O VAL B 122 N VAL B 11 SHEET 5 AA4 7 ARG B 141 PHE B 144 1 O LEU B 142 N LEU B 121 SHEET 6 AA4 7 GLY B 218 VAL B 221 1 O ILE B 220 N VAL B 143 SHEET 7 AA4 7 ALA B 243 ASN B 245 1 O TRP B 244 N VAL B 221 SHEET 1 AA5 2 LEU B 173 SER B 175 0 SHEET 2 AA5 2 LYS B 184 MET B 186 -1 O MET B 185 N PHE B 174 SHEET 1 AA6 6 GLY B 346 ILE B 349 0 SHEET 2 AA6 6 GLU B 314 VAL B 318 1 N TRP B 317 O LEU B 347 SHEET 3 AA6 6 VAL B 285 ILE B 288 1 N ILE B 286 O ILE B 316 SHEET 4 AA6 6 ILE B 364 THR B 369 1 O VAL B 368 N TYR B 287 SHEET 5 AA6 6 MET B 386 THR B 388 1 O VAL B 387 N THR B 369 SHEET 6 AA6 6 GLY B 409 PRO B 411 1 O VAL B 410 N MET B 386 LINK O GLU A 238 K K A 603 1555 1555 2.59 LINK OAM O4B A 602 K K A 603 1555 1555 2.72 LINK OAO O4B A 602 K K A 603 1555 1555 2.77 LINK OAQ O4B A 602 K K A 603 1555 1555 2.72 LINK OAR O4B A 602 K K A 603 1555 1555 2.74 LINK OAP O4B A 602 K K A 603 1555 1555 2.84 LINK OAN O4B A 602 K K A 603 1555 1555 2.82 LINK K K A 603 O GLU B 238 1555 1555 2.61 CISPEP 1 GLY A 247 PRO A 248 0 -5.54 CISPEP 2 GLY B 247 PRO B 248 0 -4.03 CRYST1 94.218 103.851 110.009 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010614 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009629 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009090 0.00000