HEADER VIRAL PROTEIN/IMMUNE SYSTEM 11-SEP-21 7VFA TITLE THE COMPLEX OF SARS-COV2 3CL AND NB1A2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NB1A2; COMPND 3 CHAIN: D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 3C-LIKE PROTEINASE; COMPND 7 CHAIN: E; COMPND 8 SYNONYM: 3CL-PRO,3CLP,MAIN PROTEASE,MPRO,NON-STRUCTURAL PROTEIN 5, COMPND 9 NSP5,SARS CORONAVIRUS MAIN PROTEINASE; COMPND 10 EC: 3.4.22.69; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMELUS BACTRIANUS; SOURCE 3 ORGANISM_TAXID: 9837; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 8 2; SOURCE 9 ORGANISM_COMMON: 2019-NCOV, SARS-COV-2; SOURCE 10 ORGANISM_TAXID: 2697049; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SARS-COV2, 3CL, NANOBODY, VIRAL PROTEIN, VIRAL PROTEIN-IMMUNE SYSTEM KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Z.C.SUN,L.WANG,Y.GENG REVDAT 4 30-OCT-24 7VFA 1 REMARK REVDAT 3 29-NOV-23 7VFA 1 REMARK REVDAT 2 06-APR-22 7VFA 1 JRNL REVDAT 1 30-MAR-22 7VFA 0 JRNL AUTH Z.SUN,L.WANG,X.LI,C.FAN,J.XU,Z.SHI,H.QIAO,Z.LAN,X.ZHANG, JRNL AUTH 2 L.LI,X.ZHOU,Y.GENG JRNL TITL AN EXTENDED CONFORMATION OF SARS-COV-2 MAIN PROTEASE REVEALS JRNL TITL 2 ALLOSTERIC TARGETS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 119 2022 JRNL REFN ESSN 1091-6490 JRNL PMID 35324337 JRNL DOI 10.1073/PNAS.2120913119 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 47951 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.820 REMARK 3 FREE R VALUE TEST SET COUNT : 2311 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.8800 - 4.4900 1.00 2957 151 0.1970 0.2167 REMARK 3 2 4.4900 - 3.5700 1.00 2829 119 0.1582 0.1614 REMARK 3 3 3.5700 - 3.1200 1.00 2713 151 0.1699 0.2036 REMARK 3 4 3.1200 - 2.8300 1.00 2706 148 0.1848 0.2185 REMARK 3 5 2.8300 - 2.6300 1.00 2710 136 0.1893 0.2292 REMARK 3 6 2.6300 - 2.4700 1.00 2666 135 0.1929 0.2598 REMARK 3 7 2.4700 - 2.3500 1.00 2718 124 0.1957 0.2280 REMARK 3 8 2.3500 - 2.2500 1.00 2665 143 0.2034 0.2310 REMARK 3 9 2.2500 - 2.1600 1.00 2627 147 0.2125 0.2597 REMARK 3 10 2.1600 - 2.0900 1.00 2666 127 0.1910 0.2336 REMARK 3 11 2.0900 - 2.0200 1.00 2647 143 0.1907 0.2443 REMARK 3 12 2.0200 - 1.9600 1.00 2668 129 0.1971 0.2257 REMARK 3 13 1.9600 - 1.9100 1.00 2639 135 0.2363 0.3019 REMARK 3 14 1.9100 - 1.8600 1.00 2602 133 0.2317 0.2570 REMARK 3 15 1.8600 - 1.8200 1.00 2625 137 0.2286 0.2598 REMARK 3 16 1.8200 - 1.7800 0.99 2637 127 0.2336 0.2691 REMARK 3 17 1.7800 - 1.7500 0.98 2565 126 0.2605 0.3196 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.738 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3280 REMARK 3 ANGLE : 0.712 4456 REMARK 3 CHIRALITY : 0.048 502 REMARK 3 PLANARITY : 0.005 576 REMARK 3 DIHEDRAL : 17.930 451 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7VFA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-SEP-21. REMARK 100 THE DEPOSITION ID IS D_1300024606. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 97 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47951 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 29.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 9.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 2.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6LU7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG6000, POTASSIUM PHOSPHATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 119.50600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 30.86150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 30.86150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 179.25900 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 30.86150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 30.86150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 59.75300 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 30.86150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 30.86150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 179.25900 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 30.86150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 30.86150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 59.75300 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 119.50600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 O4 SO4 E 401 LIES ON A SPECIAL POSITION. REMARK 375 HOH E 740 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET D 1 REMARK 465 LYS D 2 REMARK 465 TYR D 3 REMARK 465 LEU D 4 REMARK 465 LEU D 5 REMARK 465 PRO D 6 REMARK 465 THR D 7 REMARK 465 ALA D 8 REMARK 465 ALA D 9 REMARK 465 ALA D 10 REMARK 465 GLY D 11 REMARK 465 LEU D 12 REMARK 465 LEU D 13 REMARK 465 LEU D 14 REMARK 465 LEU D 15 REMARK 465 ALA D 16 REMARK 465 ALA D 17 REMARK 465 GLN D 18 REMARK 465 PRO D 19 REMARK 465 ALA D 20 REMARK 465 MET D 21 REMARK 465 ALA D 22 REMARK 465 GLN D 23 REMARK 465 HIS D 147 REMARK 465 HIS D 148 REMARK 465 HIS D 149 REMARK 465 HIS D 150 REMARK 465 HIS D 151 REMARK 465 HIS D 152 REMARK 465 LEU E 220 REMARK 465 ASN E 221 REMARK 465 ARG E 222 REMARK 465 PHE E 223 REMARK 465 SER E 301 REMARK 465 GLY E 302 REMARK 465 VAL E 303 REMARK 465 THR E 304 REMARK 465 PHE E 305 REMARK 465 GLN E 306 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH E 592 O HOH E 656 1.85 REMARK 500 O HOH E 657 O HOH E 676 1.87 REMARK 500 O HOH E 732 O HOH E 752 1.92 REMARK 500 O ALA E 129 O HOH E 501 1.97 REMARK 500 O HOH E 602 O HOH E 776 1.98 REMARK 500 O HOH E 545 O HOH E 735 2.01 REMARK 500 O HOH E 671 O HOH E 755 2.01 REMARK 500 O HOH E 615 O HOH E 691 2.02 REMARK 500 O HOH D 279 O HOH D 306 2.02 REMARK 500 O HOH D 306 O HOH D 341 2.03 REMARK 500 O HOH E 586 O HOH E 658 2.04 REMARK 500 OG1 THR E 225 O HOH E 502 2.05 REMARK 500 O HOH D 344 O HOH D 364 2.08 REMARK 500 O HOH E 754 O HOH E 778 2.10 REMARK 500 O HOH E 707 O HOH E 754 2.10 REMARK 500 O HOH E 686 O HOH E 789 2.11 REMARK 500 O HOH E 735 O HOH E 782 2.14 REMARK 500 O HOH E 644 O HOH E 777 2.14 REMARK 500 O HOH D 347 O HOH E 697 2.16 REMARK 500 OE1 GLN D 141 O HOH D 201 2.17 REMARK 500 O HOH D 279 O HOH D 330 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 S SO4 E 401 O4 SO4 E 401 8445 1.46 REMARK 500 O HOH E 733 O HOH E 806 8345 1.92 REMARK 500 O3 SO4 E 401 O4 SO4 E 401 8445 2.10 REMARK 500 S SO4 E 401 S SO4 E 401 8445 2.15 REMARK 500 OE1 GLN D 138 NE2 GLN E 107 6545 2.16 REMARK 500 O HOH D 212 O HOH E 762 6545 2.17 REMARK 500 O HOH D 201 O HOH E 690 6545 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP E 33 -131.08 50.12 REMARK 500 HIS E 41 1.45 -68.96 REMARK 500 ASN E 84 -123.19 51.67 REMARK 500 GLN E 192 57.41 -158.38 REMARK 500 ASN E 277 19.71 56.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D 372 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH E 814 DISTANCE = 6.79 ANGSTROMS DBREF 7VFA D 1 152 PDB 7VFA 7VFA 1 152 DBREF 7VFA E 1 306 UNP P0DTC1 R1A_SARS2 3264 3569 SEQRES 1 D 152 MET LYS TYR LEU LEU PRO THR ALA ALA ALA GLY LEU LEU SEQRES 2 D 152 LEU LEU ALA ALA GLN PRO ALA MET ALA GLN VAL GLN LEU SEQRES 3 D 152 GLN GLU SER GLY GLY GLY SER VAL ALA ALA GLY GLY SER SEQRES 4 D 152 LEU ARG LEU SER CYS ALA VAL SER GLY VAL THR ALA SER SEQRES 5 D 152 SER VAL TYR MET ALA TRP PHE ARG GLN ALA PRO GLY LYS SEQRES 6 D 152 GLU ARG GLU GLY LEU ALA GLY ILE ASN THR VAL GLY TYR SEQRES 7 D 152 THR THR TYR ALA ASP SER VAL LYS GLY ARG PHE THR ILE SEQRES 8 D 152 SER LYS ASP ASN SER GLU ASN THR LEU TYR LEU GLN MET SEQRES 9 D 152 ASN SER LEU LYS PRO GLU ASP ILE ALA LEU TYR TYR CYS SEQRES 10 D 152 ALA ALA THR TYR LEU LEU ARG PHE ALA SER LEU SER ALA SEQRES 11 D 152 THR ASN PHE PRO TYR TRP GLY GLN GLY THR GLN VAL THR SEQRES 12 D 152 VAL SER SER HIS HIS HIS HIS HIS HIS SEQRES 1 E 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 E 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 E 306 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 E 306 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 E 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 E 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 E 306 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 E 306 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 E 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 E 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 E 306 ARG PRO ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 E 306 SER CYS GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 E 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 E 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 E 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 E 306 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 E 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 E 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 E 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 E 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 E 306 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 E 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 E 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 E 306 CYS SER GLY VAL THR PHE GLN HET SO4 E 401 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *486(H2 O) HELIX 1 AA1 THR D 50 VAL D 54 5 5 HELIX 2 AA2 LYS D 108 ILE D 112 5 5 HELIX 3 AA3 SER D 129 PHE D 133 5 5 HELIX 4 AA4 SER E 10 GLY E 15 1 6 HELIX 5 AA5 HIS E 41 CYS E 44 5 4 HELIX 6 AA6 GLU E 47 ASN E 51 5 5 HELIX 7 AA7 ASN E 53 ARG E 60 1 8 HELIX 8 AA8 SER E 62 PHE E 66 5 5 HELIX 9 AA9 GLY E 138 ASN E 142 5 5 HELIX 10 AB1 ILE E 200 ASN E 214 1 15 HELIX 11 AB2 THR E 226 MET E 235 1 10 HELIX 12 AB3 THR E 243 LEU E 250 1 8 HELIX 13 AB4 LEU E 250 GLY E 258 1 9 HELIX 14 AB5 ALA E 260 GLY E 275 1 16 HELIX 15 AB6 THR E 292 CYS E 300 1 9 SHEET 1 AA1 4 GLN D 25 SER D 29 0 SHEET 2 AA1 4 LEU D 40 SER D 47 -1 O ALA D 45 N GLN D 27 SHEET 3 AA1 4 THR D 99 MET D 104 -1 O MET D 104 N LEU D 40 SHEET 4 AA1 4 PHE D 89 ASP D 94 -1 N SER D 92 O TYR D 101 SHEET 1 AA2 6 GLY D 32 ALA D 35 0 SHEET 2 AA2 6 THR D 140 SER D 145 1 O SER D 145 N VAL D 34 SHEET 3 AA2 6 ALA D 113 THR D 120 -1 N TYR D 115 O THR D 140 SHEET 4 AA2 6 TYR D 55 GLN D 61 -1 N PHE D 59 O TYR D 116 SHEET 5 AA2 6 GLU D 68 ILE D 73 -1 O ALA D 71 N TRP D 58 SHEET 6 AA2 6 THR D 79 TYR D 81 -1 O THR D 80 N GLY D 72 SHEET 1 AA3 4 GLY D 32 ALA D 35 0 SHEET 2 AA3 4 THR D 140 SER D 145 1 O SER D 145 N VAL D 34 SHEET 3 AA3 4 ALA D 113 THR D 120 -1 N TYR D 115 O THR D 140 SHEET 4 AA3 4 TYR D 135 TRP D 136 -1 O TYR D 135 N ALA D 119 SHEET 1 AA4 7 VAL E 73 LEU E 75 0 SHEET 2 AA4 7 LEU E 67 ALA E 70 -1 N ALA E 70 O VAL E 73 SHEET 3 AA4 7 MET E 17 CYS E 22 -1 N THR E 21 O LEU E 67 SHEET 4 AA4 7 THR E 25 LEU E 32 -1 O GLY E 29 N VAL E 18 SHEET 5 AA4 7 VAL E 35 PRO E 39 -1 O TYR E 37 N LEU E 30 SHEET 6 AA4 7 VAL E 86 VAL E 91 -1 O LEU E 87 N CYS E 38 SHEET 7 AA4 7 VAL E 77 GLN E 83 -1 N ILE E 78 O LYS E 90 SHEET 1 AA5 5 LYS E 100 PHE E 103 0 SHEET 2 AA5 5 CYS E 156 GLU E 166 1 O VAL E 157 N LYS E 100 SHEET 3 AA5 5 VAL E 148 ASP E 153 -1 N ASN E 151 O SER E 158 SHEET 4 AA5 5 THR E 111 TYR E 118 -1 N SER E 113 O PHE E 150 SHEET 5 AA5 5 SER E 121 ALA E 129 -1 O SER E 123 N ALA E 116 SHEET 1 AA6 3 LYS E 100 PHE E 103 0 SHEET 2 AA6 3 CYS E 156 GLU E 166 1 O VAL E 157 N LYS E 100 SHEET 3 AA6 3 HIS E 172 THR E 175 -1 O ALA E 173 N MET E 165 SSBOND 1 CYS D 44 CYS D 117 1555 1555 2.03 CRYST1 61.723 61.723 239.012 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016201 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016201 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004184 0.00000