HEADER HYDROLASE 26-SEP-21 7VI6 TITLE CRYSTAL STRUCTURE OF GH3 BETA-N-ACETYLHEXOSAMINIDASE AMUC_2109 FROM TITLE 2 AKKERMANSIA MUCINIPHILA COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-N-ACETYLHEXOSAMINIDASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.2.1.52; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AKKERMANSIA MUCINIPHILA (STRAIN ATCC BAA-835 / SOURCE 3 DSM 22959 / JCM 33894 / BCRC 81048 / CCUG 64013 / CIP 107961 / MUC); SOURCE 4 ORGANISM_TAXID: 349741; SOURCE 5 GENE: AMUC_2109; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS AKKERMANSIA MUCINIPHILA, BETA-N-ACETYLHEXOSAMINIDASES, GH3, CATALYTIC KEYWDS 2 MECHANISM., HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.QIAN,W.YANG,X.CHEN,Y.WANG,M.ZHANG,M.WANG REVDAT 2 29-NOV-23 7VI6 1 REMARK REVDAT 1 22-DEC-21 7VI6 0 JRNL AUTH K.QIAN,W.YANG,X.CHEN,Y.WANG,M.ZHANG,M.WANG JRNL TITL FUNCTIONAL AND STRUCTURAL CHARACTERIZATION OF A GH3 JRNL TITL 2 BETA-N-ACETYLHEXOSAMINIDASE FROM AKKERMANSIA MUCINIPHILA JRNL TITL 3 INVOLVED IN MUCIN DEGRADATION JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 589 186 2022 JRNL REFN ESSN 1090-2104 JRNL DOI 10.1016/J.BBRC.2021.12.022 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 55624 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 2776 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.4600 - 5.4200 0.99 2824 150 0.1778 0.2047 REMARK 3 2 5.4200 - 4.3100 0.99 2717 132 0.1482 0.2042 REMARK 3 3 4.3100 - 3.7600 1.00 2679 131 0.1412 0.1717 REMARK 3 4 3.7600 - 3.4200 1.00 2664 154 0.1562 0.1795 REMARK 3 5 3.4200 - 3.1700 1.00 2655 145 0.1774 0.2158 REMARK 3 6 3.1700 - 2.9900 1.00 2630 148 0.1966 0.2498 REMARK 3 7 2.9900 - 2.8400 1.00 2663 129 0.1941 0.2330 REMARK 3 8 2.8400 - 2.7100 1.00 2639 135 0.2021 0.2700 REMARK 3 9 2.7100 - 2.6100 1.00 2632 136 0.2027 0.2528 REMARK 3 10 2.6100 - 2.5200 1.00 2629 162 0.2002 0.2644 REMARK 3 11 2.5200 - 2.4400 1.00 2653 107 0.2048 0.2480 REMARK 3 12 2.4400 - 2.3700 1.00 2626 131 0.2010 0.2246 REMARK 3 13 2.3700 - 2.3100 1.00 2625 132 0.2090 0.2734 REMARK 3 14 2.3100 - 2.2500 1.00 2608 135 0.2665 0.3388 REMARK 3 15 2.2500 - 2.2000 0.99 2616 140 0.2715 0.3284 REMARK 3 16 2.2000 - 2.1500 1.00 2630 127 0.2173 0.2815 REMARK 3 17 2.1500 - 2.1100 1.00 2615 153 0.2215 0.2462 REMARK 3 18 2.1100 - 2.0700 1.00 2593 133 0.2582 0.2858 REMARK 3 19 2.0700 - 2.0300 0.99 2582 137 0.2906 0.3483 REMARK 3 20 2.0300 - 2.0000 0.99 2568 159 0.2495 0.2943 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7VI6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1300024756. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NFPSS REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55774 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.12300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.88100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA REMARK 200 STARTING MODEL: 4ZM6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M NACL, 0.1M HEPES PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.46300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.49550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.55250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.49550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.46300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.55250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 343 REMARK 465 LYS A 344 REMARK 465 LEU A 345 REMARK 465 PRO A 346 REMARK 465 SER A 347 REMARK 465 SER A 348 REMARK 465 PRO A 349 REMARK 465 VAL A 350 REMARK 465 GLN A 351 REMARK 465 LYS A 352 REMARK 465 TYR A 353 REMARK 465 LEU A 354 REMARK 465 GLU A 355 REMARK 465 HIS A 356 REMARK 465 HIS A 357 REMARK 465 HIS A 358 REMARK 465 HIS A 359 REMARK 465 HIS A 360 REMARK 465 HIS A 361 REMARK 465 SER B 124 REMARK 465 ALA B 125 REMARK 465 ALA B 126 REMARK 465 LYS B 344 REMARK 465 LEU B 345 REMARK 465 PRO B 346 REMARK 465 SER B 347 REMARK 465 SER B 348 REMARK 465 PRO B 349 REMARK 465 VAL B 350 REMARK 465 GLN B 351 REMARK 465 LYS B 352 REMARK 465 TYR B 353 REMARK 465 LEU B 354 REMARK 465 GLU B 355 REMARK 465 HIS B 356 REMARK 465 HIS B 357 REMARK 465 HIS B 358 REMARK 465 HIS B 359 REMARK 465 HIS B 360 REMARK 465 HIS B 361 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 529 O HOH B 732 2.13 REMARK 500 O HOH B 567 O HOH B 718 2.17 REMARK 500 O HOH B 528 O HOH B 604 2.19 REMARK 500 O HOH B 518 O HOH B 663 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 697 O HOH B 725 4566 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 25 60.40 60.23 REMARK 500 GLN A 63 77.82 -104.49 REMARK 500 PRO A 123 7.47 -69.76 REMARK 500 THR A 191 -94.40 -128.52 REMARK 500 LEU A 213 79.74 -113.21 REMARK 500 ASP A 217 107.84 -160.34 REMARK 500 LYS A 320 108.03 -162.11 REMARK 500 GLN B 63 76.30 -110.42 REMARK 500 ALA B 128 -70.98 -70.68 REMARK 500 THR B 191 -95.14 -127.20 REMARK 500 LEU B 213 79.49 -115.60 REMARK 500 LYS B 320 106.44 -162.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 752 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH A 753 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH A 754 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH A 755 DISTANCE = 6.81 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 37 O REMARK 620 2 SER A 73 O 85.4 REMARK 620 3 HOH A 661 O 117.2 81.3 REMARK 620 4 HOH A 669 O 88.7 83.1 148.3 REMARK 620 5 HOH A 695 O 157.9 88.1 82.5 69.5 REMARK 620 6 HOH A 699 O 98.2 168.2 106.6 85.7 84.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 50 O REMARK 620 2 CYS A 53 O 72.4 REMARK 620 3 HIS A 55 O 132.5 82.9 REMARK 620 4 HOH A 535 O 65.2 59.1 132.3 REMARK 620 5 HOH A 713 O 103.2 158.9 113.0 100.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 37 O REMARK 620 2 SER B 73 O 96.0 REMARK 620 3 HOH B 569 O 88.5 105.9 REMARK 620 4 HOH B 636 O 80.7 176.0 71.9 REMARK 620 5 HOH B 678 O 98.8 83.6 167.5 99.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG B 50 O REMARK 620 2 CYS B 53 O 68.5 REMARK 620 3 HIS B 55 O 117.4 79.2 REMARK 620 4 HOH B 604 O 72.1 67.2 138.9 REMARK 620 5 HOH B 719 O 100.7 166.2 114.2 101.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 173 O REMARK 620 2 PHE B 176 O 84.8 REMARK 620 3 HOH B 557 O 84.2 84.0 REMARK 620 4 HOH B 582 O 173.5 88.9 93.5 REMARK 620 5 HOH B 680 O 90.5 83.8 167.1 90.5 REMARK 620 6 HOH B 693 O 92.4 177.1 96.1 93.9 95.9 REMARK 620 N 1 2 3 4 5 DBREF 7VI6 A 1 353 UNP B2UPP0 B2UPP0_AKKM8 1 353 DBREF 7VI6 B 1 353 UNP B2UPP0 B2UPP0_AKKM8 1 353 SEQADV 7VI6 LEU A 354 UNP B2UPP0 EXPRESSION TAG SEQADV 7VI6 GLU A 355 UNP B2UPP0 EXPRESSION TAG SEQADV 7VI6 HIS A 356 UNP B2UPP0 EXPRESSION TAG SEQADV 7VI6 HIS A 357 UNP B2UPP0 EXPRESSION TAG SEQADV 7VI6 HIS A 358 UNP B2UPP0 EXPRESSION TAG SEQADV 7VI6 HIS A 359 UNP B2UPP0 EXPRESSION TAG SEQADV 7VI6 HIS A 360 UNP B2UPP0 EXPRESSION TAG SEQADV 7VI6 HIS A 361 UNP B2UPP0 EXPRESSION TAG SEQADV 7VI6 LEU B 354 UNP B2UPP0 EXPRESSION TAG SEQADV 7VI6 GLU B 355 UNP B2UPP0 EXPRESSION TAG SEQADV 7VI6 HIS B 356 UNP B2UPP0 EXPRESSION TAG SEQADV 7VI6 HIS B 357 UNP B2UPP0 EXPRESSION TAG SEQADV 7VI6 HIS B 358 UNP B2UPP0 EXPRESSION TAG SEQADV 7VI6 HIS B 359 UNP B2UPP0 EXPRESSION TAG SEQADV 7VI6 HIS B 360 UNP B2UPP0 EXPRESSION TAG SEQADV 7VI6 HIS B 361 UNP B2UPP0 EXPRESSION TAG SEQRES 1 A 361 MET LEU PRO ALA LEU ILE GLY ILE SER GLY HIS GLU VAL SEQRES 2 A 361 GLY ALA GLU GLU GLU ALA ALA ILE ARG ARG LEU GLN PRO SEQRES 3 A 361 ALA GLY PHE ILE LEU PHE SER ARG ASN ILE ASP SER VAL SEQRES 4 A 361 GLU GLN VAL ARG GLY LEU THR GLU SER LEU ARG LYS LEU SEQRES 5 A 361 CYS LEU HIS HIS PRO VAL ILE ALA VAL ASP GLN GLU GLY SEQRES 6 A 361 GLY ARG VAL VAL ARG THR ALA SER LEU GLY LEU ASN LEU SEQRES 7 A 361 PRO SER PRO ALA SER LEU ALA ARG LEU GLY SER VAL GLY SEQRES 8 A 361 GLY ILE VAL GLU LEU GLY ALA VAL THR ALA LEU ALA LEU SEQRES 9 A 361 ARG TYR LEU GLY VAL ASN LEU ASN PHE ALA PRO VAL LEU SEQRES 10 A 361 ASP ILE CYS HIS ASP PRO SER ALA ALA ASN ALA LEU PRO SEQRES 11 A 361 GLY ARG CYS TRP GLY ASP ASN ALA GLN ASP VAL ILE SER SEQRES 12 A 361 ARG GLY GLY VAL TYR ALA SER ASN LEU ARG ARG GLY GLY SEQRES 13 A 361 VAL GLN SER CYS GLY LYS HIS PHE PRO GLY MET GLY ARG SEQRES 14 A 361 ALA LEU ALA ASP PRO HIS PHE SER LEU PRO VAL ILE GLY SEQRES 15 A 361 LEU ASP GLU ARG GLU LEU PHE LYS THR ASP LEU LEU PRO SEQRES 16 A 361 PHE LEU ALA LEU CYS PRO ALA LEU SER SER ILE MET SER SEQRES 17 A 361 ALA HIS ILE MET LEU PRO GLN ILE ASP PRO ASP TYR PRO SEQRES 18 A 361 ALA THR LEU SER GLU ARG VAL ILE ARG GLY LEU LEU ARG SEQRES 19 A 361 ASP ARG LEU GLY PHE ARG GLY VAL VAL PHE THR ASP ASP SEQRES 20 A 361 LEU CYS MET GLY ALA ILE THR THR GLN TYR SER PRO ASP SEQRES 21 A 361 ASP ALA ALA PHE LEU SER LEU LYS ALA GLY CYS ASP LEU SEQRES 22 A 361 PRO LEU ILE CYS HIS ASP PRO LEU PRO TRP LEU ASP GLY SEQRES 23 A 361 LEU ALA SER ARG GLN GLU SER LEU ASN ALA TYR ASP ARG SEQRES 24 A 361 TRP ASP SER PHE LYS ARG VAL GLU LYS LEU SER ASP SER SEQRES 25 A 361 LEU CYS PHE PRO PHE PRO GLU LYS ALA SER LEU TRP ASP SEQRES 26 A 361 SER CYS LEU ARG ARG ALA GLU ALA LEU CYS ARG LEU GLU SEQRES 27 A 361 GLU ASP GLY ARG GLU LYS LEU PRO SER SER PRO VAL GLN SEQRES 28 A 361 LYS TYR LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 361 MET LEU PRO ALA LEU ILE GLY ILE SER GLY HIS GLU VAL SEQRES 2 B 361 GLY ALA GLU GLU GLU ALA ALA ILE ARG ARG LEU GLN PRO SEQRES 3 B 361 ALA GLY PHE ILE LEU PHE SER ARG ASN ILE ASP SER VAL SEQRES 4 B 361 GLU GLN VAL ARG GLY LEU THR GLU SER LEU ARG LYS LEU SEQRES 5 B 361 CYS LEU HIS HIS PRO VAL ILE ALA VAL ASP GLN GLU GLY SEQRES 6 B 361 GLY ARG VAL VAL ARG THR ALA SER LEU GLY LEU ASN LEU SEQRES 7 B 361 PRO SER PRO ALA SER LEU ALA ARG LEU GLY SER VAL GLY SEQRES 8 B 361 GLY ILE VAL GLU LEU GLY ALA VAL THR ALA LEU ALA LEU SEQRES 9 B 361 ARG TYR LEU GLY VAL ASN LEU ASN PHE ALA PRO VAL LEU SEQRES 10 B 361 ASP ILE CYS HIS ASP PRO SER ALA ALA ASN ALA LEU PRO SEQRES 11 B 361 GLY ARG CYS TRP GLY ASP ASN ALA GLN ASP VAL ILE SER SEQRES 12 B 361 ARG GLY GLY VAL TYR ALA SER ASN LEU ARG ARG GLY GLY SEQRES 13 B 361 VAL GLN SER CYS GLY LYS HIS PHE PRO GLY MET GLY ARG SEQRES 14 B 361 ALA LEU ALA ASP PRO HIS PHE SER LEU PRO VAL ILE GLY SEQRES 15 B 361 LEU ASP GLU ARG GLU LEU PHE LYS THR ASP LEU LEU PRO SEQRES 16 B 361 PHE LEU ALA LEU CYS PRO ALA LEU SER SER ILE MET SER SEQRES 17 B 361 ALA HIS ILE MET LEU PRO GLN ILE ASP PRO ASP TYR PRO SEQRES 18 B 361 ALA THR LEU SER GLU ARG VAL ILE ARG GLY LEU LEU ARG SEQRES 19 B 361 ASP ARG LEU GLY PHE ARG GLY VAL VAL PHE THR ASP ASP SEQRES 20 B 361 LEU CYS MET GLY ALA ILE THR THR GLN TYR SER PRO ASP SEQRES 21 B 361 ASP ALA ALA PHE LEU SER LEU LYS ALA GLY CYS ASP LEU SEQRES 22 B 361 PRO LEU ILE CYS HIS ASP PRO LEU PRO TRP LEU ASP GLY SEQRES 23 B 361 LEU ALA SER ARG GLN GLU SER LEU ASN ALA TYR ASP ARG SEQRES 24 B 361 TRP ASP SER PHE LYS ARG VAL GLU LYS LEU SER ASP SER SEQRES 25 B 361 LEU CYS PHE PRO PHE PRO GLU LYS ALA SER LEU TRP ASP SEQRES 26 B 361 SER CYS LEU ARG ARG ALA GLU ALA LEU CYS ARG LEU GLU SEQRES 27 B 361 GLU ASP GLY ARG GLU LYS LEU PRO SER SER PRO VAL GLN SEQRES 28 B 361 LYS TYR LEU GLU HIS HIS HIS HIS HIS HIS HET MG A 401 1 HET MG A 402 1 HET CL A 403 1 HET CL A 404 1 HET CL A 405 1 HET CL A 406 1 HET CL A 407 1 HET MG B 401 1 HET MG B 402 1 HET MG B 403 1 HET CL B 404 1 HET CL B 405 1 HET CL B 406 1 HET CL B 407 1 HET CL B 408 1 HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION FORMUL 3 MG 5(MG 2+) FORMUL 5 CL 10(CL 1-) FORMUL 18 HOH *500(H2 O) HELIX 1 AA1 GLY A 14 GLN A 25 1 12 HELIX 2 AA2 PHE A 32 ILE A 36 5 5 HELIX 3 AA3 SER A 38 CYS A 53 1 16 HELIX 4 AA4 THR A 71 GLY A 75 5 5 HELIX 5 AA5 SER A 80 GLY A 88 1 9 HELIX 6 AA6 SER A 89 GLY A 108 1 20 HELIX 7 AA7 ASN A 137 GLY A 155 1 19 HELIX 8 AA8 GLY A 166 ALA A 170 5 5 HELIX 9 AA9 ASP A 184 THR A 191 1 8 HELIX 10 AB1 LEU A 193 LEU A 199 1 7 HELIX 11 AB2 CYS A 200 LEU A 203 5 4 HELIX 12 AB3 PRO A 221 LEU A 224 5 4 HELIX 13 AB4 SER A 225 ARG A 230 1 6 HELIX 14 AB5 GLY A 251 GLN A 256 5 6 HELIX 15 AB6 SER A 258 GLY A 270 1 13 HELIX 16 AB7 PRO A 280 GLN A 291 1 12 HELIX 17 AB8 GLU A 292 LEU A 294 5 3 HELIX 18 AB9 ASN A 295 LEU A 313 1 19 HELIX 19 AC1 LYS A 320 ARG A 342 1 23 HELIX 20 AC2 GLY B 14 GLN B 25 1 12 HELIX 21 AC3 PHE B 32 ILE B 36 5 5 HELIX 22 AC4 SER B 38 CYS B 53 1 16 HELIX 23 AC5 THR B 71 GLY B 75 5 5 HELIX 24 AC6 SER B 80 GLY B 88 1 9 HELIX 25 AC7 SER B 89 GLY B 108 1 20 HELIX 26 AC8 ASN B 137 GLY B 155 1 19 HELIX 27 AC9 GLY B 166 ALA B 170 5 5 HELIX 28 AD1 ASP B 184 THR B 191 1 8 HELIX 29 AD2 LEU B 193 LEU B 199 1 7 HELIX 30 AD3 CYS B 200 LEU B 203 5 4 HELIX 31 AD4 PRO B 221 LEU B 224 5 4 HELIX 32 AD5 SER B 225 ARG B 230 1 6 HELIX 33 AD6 ALA B 252 TYR B 257 1 6 HELIX 34 AD7 SER B 258 GLY B 270 1 13 HELIX 35 AD8 PRO B 280 GLN B 291 1 12 HELIX 36 AD9 GLU B 292 LEU B 294 5 3 HELIX 37 AE1 ASN B 295 LEU B 313 1 19 HELIX 38 AE2 LYS B 320 GLU B 343 1 24 SHEET 1 AA1 8 LEU A 111 ASN A 112 0 SHEET 2 AA1 8 VAL A 58 VAL A 61 1 O ILE A 59 N LEU A 111 SHEET 3 AA1 8 PRO A 26 LEU A 31 1 N LEU A 31 O ALA A 60 SHEET 4 AA1 8 LEU A 2 GLY A 7 1 N LEU A 2 O ALA A 27 SHEET 5 AA1 8 LEU A 273 ILE A 276 1 O ILE A 276 N LEU A 5 SHEET 6 AA1 8 VAL A 242 ASP A 247 1 O VAL A 243 N LEU A 273 SHEET 7 AA1 8 SER A 205 SER A 208 1 N SER A 208 O PHE A 244 SHEET 8 AA1 8 CYS A 160 PHE A 164 1 N GLY A 161 O MET A 207 SHEET 1 AA2 8 LEU B 111 ASN B 112 0 SHEET 2 AA2 8 VAL B 58 VAL B 61 1 O ILE B 59 N LEU B 111 SHEET 3 AA2 8 PRO B 26 ILE B 30 1 N PHE B 29 O VAL B 58 SHEET 4 AA2 8 LEU B 2 GLY B 7 1 N LEU B 2 O ALA B 27 SHEET 5 AA2 8 LEU B 273 ILE B 276 1 O ILE B 276 N LEU B 5 SHEET 6 AA2 8 VAL B 242 ASP B 247 1 O VAL B 243 N LEU B 273 SHEET 7 AA2 8 SER B 205 SER B 208 1 N ILE B 206 O PHE B 244 SHEET 8 AA2 8 CYS B 160 PHE B 164 1 N PHE B 164 O MET B 207 LINK O ASP A 37 MG MG A 401 1555 1555 2.43 LINK O ARG A 50 MG MG A 402 1555 1555 2.58 LINK O CYS A 53 MG MG A 402 1555 1555 2.56 LINK O HIS A 55 MG MG A 402 1555 1555 2.42 LINK O SER A 73 MG MG A 401 1555 1555 2.62 LINK MG MG A 401 O HOH A 661 1555 1555 2.12 LINK MG MG A 401 O HOH A 669 1555 1555 2.24 LINK MG MG A 401 O HOH A 695 1555 1555 2.44 LINK MG MG A 401 O HOH A 699 1555 1555 2.76 LINK MG MG A 402 O HOH A 535 1555 1555 2.75 LINK MG MG A 402 O HOH A 713 1555 1555 2.26 LINK O ASP B 37 MG MG B 402 1555 1555 2.48 LINK O ARG B 50 MG MG B 403 1555 1555 2.68 LINK O CYS B 53 MG MG B 403 1555 1555 2.64 LINK O HIS B 55 MG MG B 403 1555 1555 2.56 LINK O SER B 73 MG MG B 402 1555 1555 2.36 LINK O ASP B 173 MG MG B 401 1555 1555 2.26 LINK O PHE B 176 MG MG B 401 1555 1555 2.43 LINK MG MG B 401 O HOH B 557 1555 1555 2.49 LINK MG MG B 401 O HOH B 582 1555 1555 2.33 LINK MG MG B 401 O HOH B 680 1555 1555 2.69 LINK MG MG B 401 O HOH B 693 1555 1555 2.40 LINK MG MG B 402 O HOH B 569 1555 1555 2.53 LINK MG MG B 402 O HOH B 636 1555 1555 2.88 LINK MG MG B 402 O HOH B 678 1555 1555 2.45 LINK MG MG B 403 O HOH B 604 1555 1555 2.49 LINK MG MG B 403 O HOH B 719 1555 1555 2.29 CISPEP 1 ALA A 114 PRO A 115 0 6.00 CISPEP 2 LYS A 162 HIS A 163 0 -3.89 CISPEP 3 PHE A 164 PRO A 165 0 6.26 CISPEP 4 ALA B 114 PRO B 115 0 5.41 CISPEP 5 LYS B 162 HIS B 163 0 -4.65 CISPEP 6 PHE B 164 PRO B 165 0 5.40 CRYST1 78.926 81.105 126.991 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012670 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012330 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007875 0.00000