HEADER VIRAL PROTEIN 29-SEP-21 7VK6 TITLE CRYSTAL STRUCTURE OF SARS-COV-2 MPRO AT 2.25 A RESOLUTION-13 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3C-LIKE PROTEINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MAIN PROTEASE; COMPND 5 EC: 3.4.22.69; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SARS-COV-2, MAIN PROTEASE, SFX, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.DEMIRCI,B.YUKSEL REVDAT 2 29-NOV-23 7VK6 1 REMARK REVDAT 1 26-JAN-22 7VK6 0 JRNL AUTH O.GUVEN,M.GUL,E.AYAN,J.A.JOHNSON,B.CAKILKAYA,G.USTA, JRNL AUTH 2 F.B.ERTEM,N.TOKAY,B.YUKSEL,O.GOCENLER,C.BUYUKDAG,S.BOTHA, JRNL AUTH 3 G.KETAWALA,Z.SU,B.HAYES,F.POITEVIN,A.BATYUK,C.H.YOON, JRNL AUTH 4 C.KUPITZ,S.DURDAGI,R.G.SIERRA,H.DEMIRCI JRNL TITL CASE STUDY OF HIGH-THROUGHPUT DRUG SCREENING AND REMOTE DATA JRNL TITL 2 COLLECTION FOR SARS-COV-2 MAIN PROTEASE BY USING SERIAL JRNL TITL 3 FEMTOSECOND X-RAY CRYSTALLOGRAPHY JRNL REF CRYSTALS V. 11 2021 JRNL REFN ESSN 2073-4352 JRNL DOI 10.3390/CRYST11121579 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 16.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 36768 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.270 REMARK 3 FREE R VALUE TEST SET COUNT : 833 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 16.8200 - 4.0700 1.00 6203 147 0.1751 0.2147 REMARK 3 2 4.0700 - 3.2400 1.00 6037 138 0.2012 0.2258 REMARK 3 3 3.2400 - 2.8300 1.00 5964 141 0.2457 0.2807 REMARK 3 4 2.8300 - 2.5700 1.00 5919 134 0.3021 0.3363 REMARK 3 5 2.5700 - 2.3900 1.00 5910 134 0.3837 0.4234 REMARK 3 6 2.3900 - 2.2500 1.00 5902 139 0.3671 0.3840 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.18 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.1721 -19.1200 18.1930 REMARK 3 T TENSOR REMARK 3 T11: 0.3934 T22: 0.3391 REMARK 3 T33: 0.2974 T12: -0.0372 REMARK 3 T13: -0.0032 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 1.0298 L22: 3.1207 REMARK 3 L33: 2.2517 L12: -1.1156 REMARK 3 L13: 0.9841 L23: -2.0539 REMARK 3 S TENSOR REMARK 3 S11: -0.1842 S12: -0.1801 S13: 0.0618 REMARK 3 S21: 0.1525 S22: 0.0095 S23: -0.0458 REMARK 3 S31: 0.0978 S32: 0.1994 S33: 0.1802 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 44 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2054 -28.7577 34.3527 REMARK 3 T TENSOR REMARK 3 T11: 0.6316 T22: 0.4840 REMARK 3 T33: 0.3730 T12: -0.0047 REMARK 3 T13: 0.0169 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 0.7140 L22: 9.7963 REMARK 3 L33: 2.0481 L12: -1.0250 REMARK 3 L13: 1.2156 L23: -3.7233 REMARK 3 S TENSOR REMARK 3 S11: -0.1901 S12: -0.2082 S13: 0.2224 REMARK 3 S21: 0.9822 S22: 0.1473 S23: -0.5089 REMARK 3 S31: -0.5086 S32: 0.0107 S33: 0.2871 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 71 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.5114 -20.9382 21.3624 REMARK 3 T TENSOR REMARK 3 T11: 0.3467 T22: 0.3225 REMARK 3 T33: 0.3461 T12: -0.0462 REMARK 3 T13: 0.0412 T23: -0.0342 REMARK 3 L TENSOR REMARK 3 L11: 1.5314 L22: 3.0833 REMARK 3 L33: 4.6238 L12: -0.8446 REMARK 3 L13: 0.1865 L23: -0.0999 REMARK 3 S TENSOR REMARK 3 S11: -0.0713 S12: -0.2724 S13: 0.0312 REMARK 3 S21: 0.6815 S22: -0.0787 S23: 0.0798 REMARK 3 S31: -0.2593 S32: 0.0760 S33: 0.1481 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 121 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.8480 -23.6645 9.5888 REMARK 3 T TENSOR REMARK 3 T11: 0.4255 T22: 0.3718 REMARK 3 T33: 0.3756 T12: 0.0284 REMARK 3 T13: -0.0065 T23: 0.0167 REMARK 3 L TENSOR REMARK 3 L11: 3.5720 L22: 5.1664 REMARK 3 L33: 6.4141 L12: 0.9458 REMARK 3 L13: -2.4098 L23: 3.4532 REMARK 3 S TENSOR REMARK 3 S11: 0.3489 S12: 0.0228 S13: 0.4362 REMARK 3 S21: -0.2264 S22: -0.2474 S23: -0.2635 REMARK 3 S31: -0.0272 S32: 0.2851 S33: -0.2881 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.3932 -32.9475 14.3359 REMARK 3 T TENSOR REMARK 3 T11: 0.4329 T22: 0.3892 REMARK 3 T33: 0.3034 T12: 0.0574 REMARK 3 T13: 0.0450 T23: -0.0282 REMARK 3 L TENSOR REMARK 3 L11: 0.1876 L22: 1.3550 REMARK 3 L33: 4.9060 L12: 0.9178 REMARK 3 L13: 0.4170 L23: 0.1401 REMARK 3 S TENSOR REMARK 3 S11: -0.0205 S12: 0.4150 S13: 0.0022 REMARK 3 S21: -0.1978 S22: 0.0550 S23: -0.4330 REMARK 3 S31: 0.6632 S32: 0.2233 S33: -0.1324 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 201 THROUGH 274 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.5579 -37.0656 -14.6922 REMARK 3 T TENSOR REMARK 3 T11: 0.4302 T22: 0.4506 REMARK 3 T33: 0.2636 T12: 0.0056 REMARK 3 T13: -0.0213 T23: -0.0808 REMARK 3 L TENSOR REMARK 3 L11: 4.8526 L22: 4.1145 REMARK 3 L33: 6.6116 L12: -0.1377 REMARK 3 L13: -2.2836 L23: 1.3608 REMARK 3 S TENSOR REMARK 3 S11: 0.1870 S12: 0.2884 S13: -0.0655 REMARK 3 S21: 0.0782 S22: -0.0848 S23: 0.1044 REMARK 3 S31: -0.1024 S32: -0.4608 S33: -0.1237 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 275 THROUGH 300 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.2782 -26.0564 -10.3991 REMARK 3 T TENSOR REMARK 3 T11: 0.5366 T22: 0.3370 REMARK 3 T33: 0.2703 T12: -0.0553 REMARK 3 T13: -0.1364 T23: -0.0792 REMARK 3 L TENSOR REMARK 3 L11: 9.4293 L22: 4.6692 REMARK 3 L33: 9.1460 L12: 4.3688 REMARK 3 L13: -5.2980 L23: -3.0980 REMARK 3 S TENSOR REMARK 3 S11: -0.0812 S12: -0.6295 S13: 0.0687 REMARK 3 S21: -0.2253 S22: -0.0681 S23: 0.0038 REMARK 3 S31: -1.0566 S32: 0.0245 S33: 0.1710 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.4295 -0.6415 -0.6725 REMARK 3 T TENSOR REMARK 3 T11: 0.2127 T22: 0.3462 REMARK 3 T33: 0.3002 T12: 0.0020 REMARK 3 T13: 0.0149 T23: 0.0395 REMARK 3 L TENSOR REMARK 3 L11: 1.7982 L22: 3.8030 REMARK 3 L33: 3.2254 L12: 0.6172 REMARK 3 L13: -0.8508 L23: -2.1200 REMARK 3 S TENSOR REMARK 3 S11: -0.1650 S12: 0.5312 S13: -0.1311 REMARK 3 S21: -0.0673 S22: 0.1344 S23: 0.2564 REMARK 3 S31: -0.0001 S32: -0.4218 S33: 0.0243 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 44 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.7678 10.3499 -14.7702 REMARK 3 T TENSOR REMARK 3 T11: 0.6510 T22: 0.9912 REMARK 3 T33: 0.6559 T12: 0.0886 REMARK 3 T13: -0.2285 T23: 0.1798 REMARK 3 L TENSOR REMARK 3 L11: 5.8317 L22: 7.1542 REMARK 3 L33: 3.6183 L12: -0.1345 REMARK 3 L13: -2.5758 L23: -2.5596 REMARK 3 S TENSOR REMARK 3 S11: 0.1472 S12: 1.4040 S13: 0.7559 REMARK 3 S21: -1.6533 S22: 0.2530 S23: 0.8625 REMARK 3 S31: 0.3909 S32: -0.4929 S33: -0.0777 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 71 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.2353 4.4529 0.7199 REMARK 3 T TENSOR REMARK 3 T11: 0.2072 T22: 0.3316 REMARK 3 T33: 0.3236 T12: -0.0608 REMARK 3 T13: -0.0244 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 1.8588 L22: 5.6018 REMARK 3 L33: 3.4646 L12: -1.2344 REMARK 3 L13: -1.3821 L23: -0.1280 REMARK 3 S TENSOR REMARK 3 S11: -0.0463 S12: 0.2057 S13: -0.0197 REMARK 3 S21: -0.1588 S22: 0.0918 S23: 0.3850 REMARK 3 S31: 0.0425 S32: -0.0790 S33: 0.1035 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 121 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.1029 -7.2175 -3.1076 REMARK 3 T TENSOR REMARK 3 T11: 0.2917 T22: 0.3644 REMARK 3 T33: 0.3432 T12: 0.0822 REMARK 3 T13: -0.0051 T23: 0.0919 REMARK 3 L TENSOR REMARK 3 L11: 6.1657 L22: 6.7265 REMARK 3 L33: 5.9884 L12: -2.8298 REMARK 3 L13: -5.1289 L23: -0.0268 REMARK 3 S TENSOR REMARK 3 S11: -0.5497 S12: 0.0553 S13: -0.2706 REMARK 3 S21: 0.0432 S22: 0.3651 S23: 0.3472 REMARK 3 S31: 0.1816 S32: -0.5347 S33: 0.0281 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 156 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.2986 -1.4259 -11.7368 REMARK 3 T TENSOR REMARK 3 T11: 0.3932 T22: 0.3952 REMARK 3 T33: 0.2677 T12: 0.0893 REMARK 3 T13: 0.0377 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 3.5785 L22: 4.1448 REMARK 3 L33: 5.9591 L12: -0.0846 REMARK 3 L13: -0.9849 L23: -0.3484 REMARK 3 S TENSOR REMARK 3 S11: 0.2547 S12: 0.6966 S13: -0.2646 REMARK 3 S21: -0.5962 S22: 0.0332 S23: 0.2437 REMARK 3 S31: 0.5635 S32: 0.1252 S33: -0.2267 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 201 THROUGH 274 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.3777 -17.1892 -3.8023 REMARK 3 T TENSOR REMARK 3 T11: 0.3948 T22: 0.4119 REMARK 3 T33: 0.5920 T12: 0.0469 REMARK 3 T13: 0.0896 T23: 0.0817 REMARK 3 L TENSOR REMARK 3 L11: 9.1355 L22: 6.2477 REMARK 3 L33: 4.7048 L12: -7.1555 REMARK 3 L13: 0.9817 L23: 1.0658 REMARK 3 S TENSOR REMARK 3 S11: 0.0932 S12: -0.0102 S13: 1.1990 REMARK 3 S21: -0.3667 S22: -0.2019 S23: -1.4258 REMARK 3 S31: -0.3474 S32: 0.2442 S33: 0.0440 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 275 THROUGH 301 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.4551 -20.1891 -0.2318 REMARK 3 T TENSOR REMARK 3 T11: 0.6311 T22: 0.6680 REMARK 3 T33: 0.9662 T12: 0.0788 REMARK 3 T13: 0.0045 T23: 0.0410 REMARK 3 L TENSOR REMARK 3 L11: 3.6887 L22: 4.8754 REMARK 3 L33: 3.3340 L12: -4.2878 REMARK 3 L13: -0.0953 L23: 1.3850 REMARK 3 S TENSOR REMARK 3 S11: -0.4707 S12: -0.2161 S13: -1.6971 REMARK 3 S21: 0.8701 S22: 0.2318 S23: 1.9304 REMARK 3 S31: 0.6107 S32: -1.1406 S33: 0.0892 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7VK6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1300024220. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-AUG-20 REMARK 200 TEMPERATURE (KELVIN) : 294 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : FREE ELECTRON LASER REMARK 200 BEAMLINE : MFX REMARK 200 X-RAY GENERATOR MODEL : SLAC LCLS BEAMLINE MFX REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.25 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : SLAC EPIX10K 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTFEL REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39491 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 41.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 1.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7CWC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM ACETATE TRIHYDRATE, 0.1M REMARK 280 TRIS 8.5, 30% W/V PEG 4000, PH 8.5, BATCH MODE, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 52.15000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.55000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.75000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 34.55000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 52.15000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.75000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 301 REMARK 465 GLY A 302 REMARK 465 VAL A 303 REMARK 465 THR A 304 REMARK 465 PHE A 305 REMARK 465 GLN A 306 REMARK 465 SER B 1 REMARK 465 GLY B 2 REMARK 465 GLY B 302 REMARK 465 VAL B 303 REMARK 465 THR B 304 REMARK 465 PHE B 305 REMARK 465 GLN B 306 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 -126.17 52.50 REMARK 500 HIS A 41 48.22 -83.23 REMARK 500 ASN A 84 -111.90 53.37 REMARK 500 TYR A 154 -113.66 53.90 REMARK 500 LEU A 167 147.45 71.33 REMARK 500 ASP B 33 -123.85 55.35 REMARK 500 ASN B 51 70.71 -151.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 457 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A 458 DISTANCE = 6.21 ANGSTROMS DBREF 7VK6 A 1 306 UNP P0DTC1 R1A_SARS2 3264 3569 DBREF 7VK6 B 1 306 UNP P0DTC1 R1A_SARS2 3264 3569 SEQRES 1 A 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 A 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 A 306 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 A 306 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 A 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 A 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 A 306 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 A 306 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 A 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 A 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 A 306 ARG PRO ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 A 306 SER CYS GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 A 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 A 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 A 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 A 306 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 A 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 A 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 A 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 A 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 A 306 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 A 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 A 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 A 306 CYS SER GLY VAL THR PHE GLN SEQRES 1 B 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 B 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 B 306 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 B 306 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 B 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 B 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 B 306 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 B 306 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 B 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 B 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 B 306 ARG PRO ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 B 306 SER CYS GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 B 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 B 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 B 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 B 306 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 B 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 B 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 B 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 B 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 B 306 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 B 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 B 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 B 306 CYS SER GLY VAL THR PHE GLN FORMUL 3 HOH *103(H2 O) HELIX 1 AA1 SER A 10 GLY A 15 1 6 HELIX 2 AA2 SER A 46 LEU A 50 5 5 HELIX 3 AA3 ASN A 53 ARG A 60 1 8 HELIX 4 AA4 SER A 62 HIS A 64 5 3 HELIX 5 AA5 ILE A 200 GLY A 215 1 16 HELIX 6 AA6 THR A 226 TYR A 237 1 12 HELIX 7 AA7 THR A 243 LEU A 250 1 8 HELIX 8 AA8 LEU A 250 THR A 257 1 8 HELIX 9 AA9 ALA A 260 GLY A 275 1 16 HELIX 10 AB1 THR A 292 ARG A 298 1 7 HELIX 11 AB2 SER B 10 GLY B 15 1 6 HELIX 12 AB3 HIS B 41 CYS B 44 5 4 HELIX 13 AB4 GLU B 47 ASN B 51 5 5 HELIX 14 AB5 ASN B 53 LYS B 61 1 9 HELIX 15 AB6 SER B 62 HIS B 64 5 3 HELIX 16 AB7 ILE B 200 ASN B 214 1 15 HELIX 17 AB8 THR B 226 TYR B 237 1 12 HELIX 18 AB9 THR B 243 LEU B 250 1 8 HELIX 19 AC1 LEU B 250 GLY B 258 1 9 HELIX 20 AC2 ALA B 260 ASN B 274 1 15 HELIX 21 AC3 THR B 292 SER B 301 1 10 SHEET 1 AA1 7 VAL A 73 LEU A 75 0 SHEET 2 AA1 7 PHE A 66 ALA A 70 -1 N ALA A 70 O VAL A 73 SHEET 3 AA1 7 MET A 17 CYS A 22 -1 N THR A 21 O LEU A 67 SHEET 4 AA1 7 THR A 25 LEU A 32 -1 O THR A 25 N CYS A 22 SHEET 5 AA1 7 VAL A 35 PRO A 39 -1 O TYR A 37 N LEU A 30 SHEET 6 AA1 7 VAL A 86 VAL A 91 -1 O LEU A 89 N VAL A 36 SHEET 7 AA1 7 VAL A 77 GLN A 83 -1 N ILE A 78 O LYS A 90 SHEET 1 AA2 5 TYR A 101 PHE A 103 0 SHEET 2 AA2 5 CYS A 156 MET A 165 1 O PHE A 159 N LYS A 102 SHEET 3 AA2 5 VAL A 148 ASP A 153 -1 N ASP A 153 O CYS A 156 SHEET 4 AA2 5 THR A 111 TYR A 118 -1 N SER A 113 O PHE A 150 SHEET 5 AA2 5 SER A 121 ALA A 129 -1 O TYR A 126 N VAL A 114 SHEET 1 AA3 3 TYR A 101 PHE A 103 0 SHEET 2 AA3 3 CYS A 156 MET A 165 1 O PHE A 159 N LYS A 102 SHEET 3 AA3 3 ALA A 173 THR A 175 -1 O ALA A 173 N MET A 165 SHEET 1 AA4 7 VAL B 73 LEU B 75 0 SHEET 2 AA4 7 PHE B 66 ALA B 70 -1 N ALA B 70 O VAL B 73 SHEET 3 AA4 7 MET B 17 CYS B 22 -1 N THR B 21 O LEU B 67 SHEET 4 AA4 7 THR B 25 LEU B 32 -1 O GLY B 29 N VAL B 18 SHEET 5 AA4 7 VAL B 35 PRO B 39 -1 O TYR B 37 N LEU B 30 SHEET 6 AA4 7 VAL B 86 VAL B 91 -1 O LEU B 87 N CYS B 38 SHEET 7 AA4 7 VAL B 77 GLN B 83 -1 N SER B 81 O LYS B 88 SHEET 1 AA5 5 LYS B 100 PHE B 103 0 SHEET 2 AA5 5 CYS B 156 GLU B 166 1 O VAL B 157 N LYS B 100 SHEET 3 AA5 5 VAL B 148 ILE B 152 -1 N ASN B 151 O SER B 158 SHEET 4 AA5 5 THR B 111 CYS B 117 -1 N SER B 113 O PHE B 150 SHEET 5 AA5 5 PRO B 122 ALA B 129 -1 O TYR B 126 N VAL B 114 SHEET 1 AA6 3 LYS B 100 PHE B 103 0 SHEET 2 AA6 3 CYS B 156 GLU B 166 1 O VAL B 157 N LYS B 100 SHEET 3 AA6 3 HIS B 172 THR B 175 -1 O ALA B 173 N MET B 165 CRYST1 104.300 105.500 69.100 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009588 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009479 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014472 0.00000