HEADER TRANSFERASE 30-SEP-21 7VKM TITLE CRYSTAL STRUCTURE OF TRKA (G595R) KINASE DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.10.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NTRK1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS TRK, NTRK, MACROCYCLIC INHIBITOR, DRUG RESISTANCE, REPOTRECTINIB, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.W.MURRAY,E.ROGERS,D.ZHAI,W.DENG,X.CHEN,P.A.SPRENGELER,X.ZHANG, AUTHOR 2 A.GRABER,S.H.REICH,S.STOPATSCHINSKAJA,B.SOLOMON,B.BESSE,A.DRILON REVDAT 3 29-NOV-23 7VKM 1 REMARK REVDAT 2 23-FEB-22 7VKM 1 JRNL REVDAT 1 13-OCT-21 7VKM 0 JRNL AUTH B.W.MURRAY,E.ROGERS,D.ZHAI,W.DENG,X.CHEN,P.A.SPRENGELER, JRNL AUTH 2 X.ZHANG,A.GRABER,S.H.REICH,S.STOPATSCHINSKAJA,B.SOLOMON, JRNL AUTH 3 B.BESSE,A.DRILON JRNL TITL MOLECULAR CHARACTERISTICS OF REPOTRECTINIB THAT ENABLE JRNL TITL 2 POTENT INHIBITION OF TRK FUSION PROTEINS AND RESISTANT JRNL TITL 3 MUTATIONS. JRNL REF MOL.CANCER THER. V. 20 2446 2021 JRNL REFN ESSN 1538-8514 JRNL PMID 34625502 JRNL DOI 10.1158/1535-7163.MCT-21-0632 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 13783 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 724 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1009 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 51 REMARK 3 BIN FREE R VALUE : 0.3510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2401 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 53 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.62000 REMARK 3 B22 (A**2) : 1.62000 REMARK 3 B33 (A**2) : -5.25000 REMARK 3 B12 (A**2) : 0.81000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.409 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.282 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.214 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.876 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2470 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2322 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3343 ; 1.539 ; 1.639 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5355 ; 1.283 ; 1.573 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 301 ; 7.253 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 143 ;33.938 ;20.280 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 424 ;21.399 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;21.586 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 299 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2778 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 569 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1204 ; 5.343 ; 6.138 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1203 ; 5.284 ; 6.137 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1505 ; 8.055 ; 9.211 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1506 ; 8.070 ; 9.214 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1265 ; 5.510 ; 6.666 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1266 ; 5.508 ; 6.670 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1839 ; 8.712 ; 9.732 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2732 ;12.004 ;68.839 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2730 ;12.007 ;68.878 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 7VKM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1300024847. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14516 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 38.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.45600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4YNE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.0M NACL, 0.1M BIS-TRIS PH 6.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 52.71150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 30.43300 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 67.91367 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 52.71150 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 30.43300 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 67.91367 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 52.71150 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 30.43300 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 67.91367 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 52.71150 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 30.43300 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 67.91367 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 52.71150 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 30.43300 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 67.91367 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 52.71150 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 30.43300 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 67.91367 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 60.86600 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 135.82733 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 60.86600 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 135.82733 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 60.86600 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 135.82733 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 60.86600 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 135.82733 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 60.86600 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 135.82733 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 60.86600 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 135.82733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 471 REMARK 465 SER A 472 REMARK 465 TYR A 473 REMARK 465 TYR A 474 REMARK 465 HIS A 475 REMARK 465 HIS A 476 REMARK 465 HIS A 477 REMARK 465 HIS A 478 REMARK 465 HIS A 479 REMARK 465 HIS A 480 REMARK 465 ASP A 481 REMARK 465 TYR A 482 REMARK 465 ASP A 483 REMARK 465 ILE A 484 REMARK 465 PRO A 485 REMARK 465 THR A 486 REMARK 465 THR A 487 REMARK 465 GLU A 488 REMARK 465 ASN A 489 REMARK 465 LEU A 490 REMARK 465 TYR A 491 REMARK 465 PHE A 492 REMARK 465 GLN A 493 REMARK 465 GLY A 494 REMARK 465 ALA A 495 REMARK 465 GLY A 796 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 599 O LEU A 611 4555 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 654 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 595 -155.42 71.11 REMARK 500 PRO A 621 152.37 -48.74 REMARK 500 ARG A 649 -23.12 84.51 REMARK 500 ALA A 652 158.15 179.25 REMARK 500 LEU A 792 -153.65 22.51 REMARK 500 REMARK 500 REMARK: NULL DBREF 7VKM A 502 796 UNP J3KP20 J3KP20_HUMAN 499 793 SEQADV 7VKM MET A 471 UNP J3KP20 INITIATING METHIONINE SEQADV 7VKM SER A 472 UNP J3KP20 EXPRESSION TAG SEQADV 7VKM TYR A 473 UNP J3KP20 EXPRESSION TAG SEQADV 7VKM TYR A 474 UNP J3KP20 EXPRESSION TAG SEQADV 7VKM HIS A 475 UNP J3KP20 EXPRESSION TAG SEQADV 7VKM HIS A 476 UNP J3KP20 EXPRESSION TAG SEQADV 7VKM HIS A 477 UNP J3KP20 EXPRESSION TAG SEQADV 7VKM HIS A 478 UNP J3KP20 EXPRESSION TAG SEQADV 7VKM HIS A 479 UNP J3KP20 EXPRESSION TAG SEQADV 7VKM HIS A 480 UNP J3KP20 EXPRESSION TAG SEQADV 7VKM ASP A 481 UNP J3KP20 EXPRESSION TAG SEQADV 7VKM TYR A 482 UNP J3KP20 EXPRESSION TAG SEQADV 7VKM ASP A 483 UNP J3KP20 EXPRESSION TAG SEQADV 7VKM ILE A 484 UNP J3KP20 EXPRESSION TAG SEQADV 7VKM PRO A 485 UNP J3KP20 EXPRESSION TAG SEQADV 7VKM THR A 486 UNP J3KP20 EXPRESSION TAG SEQADV 7VKM THR A 487 UNP J3KP20 EXPRESSION TAG SEQADV 7VKM GLU A 488 UNP J3KP20 EXPRESSION TAG SEQADV 7VKM ASN A 489 UNP J3KP20 EXPRESSION TAG SEQADV 7VKM LEU A 490 UNP J3KP20 EXPRESSION TAG SEQADV 7VKM TYR A 491 UNP J3KP20 EXPRESSION TAG SEQADV 7VKM PHE A 492 UNP J3KP20 EXPRESSION TAG SEQADV 7VKM GLN A 493 UNP J3KP20 EXPRESSION TAG SEQADV 7VKM GLY A 494 UNP J3KP20 EXPRESSION TAG SEQADV 7VKM ALA A 495 UNP J3KP20 EXPRESSION TAG SEQADV 7VKM MET A 496 UNP J3KP20 EXPRESSION TAG SEQADV 7VKM GLY A 497 UNP J3KP20 EXPRESSION TAG SEQADV 7VKM SER A 498 UNP J3KP20 EXPRESSION TAG SEQADV 7VKM GLY A 499 UNP J3KP20 EXPRESSION TAG SEQADV 7VKM ILE A 500 UNP J3KP20 EXPRESSION TAG SEQADV 7VKM ARG A 501 UNP J3KP20 EXPRESSION TAG SEQADV 7VKM ARG A 595 UNP J3KP20 GLY 592 ENGINEERED MUTATION SEQRES 1 A 326 MET SER TYR TYR HIS HIS HIS HIS HIS HIS ASP TYR ASP SEQRES 2 A 326 ILE PRO THR THR GLU ASN LEU TYR PHE GLN GLY ALA MET SEQRES 3 A 326 GLY SER GLY ILE ARG VAL HIS HIS ILE LYS ARG ARG ASP SEQRES 4 A 326 ILE VAL LEU LYS TRP GLU LEU GLY GLU GLY ALA PHE GLY SEQRES 5 A 326 LYS VAL PHE LEU ALA GLU CYS HIS ASN LEU LEU PRO GLU SEQRES 6 A 326 GLN ASP LYS MET LEU VAL ALA VAL LYS ALA LEU LYS GLU SEQRES 7 A 326 ALA SER GLU SER ALA ARG GLN ASP PHE GLN ARG GLU ALA SEQRES 8 A 326 GLU LEU LEU THR MET LEU GLN HIS GLN HIS ILE VAL ARG SEQRES 9 A 326 PHE PHE GLY VAL CYS THR GLU GLY ARG PRO LEU LEU MET SEQRES 10 A 326 VAL PHE GLU TYR MET ARG HIS ARG ASP LEU ASN ARG PHE SEQRES 11 A 326 LEU ARG SER HIS GLY PRO ASP ALA LYS LEU LEU ALA GLY SEQRES 12 A 326 GLY GLU ASP VAL ALA PRO GLY PRO LEU GLY LEU GLY GLN SEQRES 13 A 326 LEU LEU ALA VAL ALA SER GLN VAL ALA ALA GLY MET VAL SEQRES 14 A 326 TYR LEU ALA GLY LEU HIS PHE VAL HIS ARG ASP LEU ALA SEQRES 15 A 326 THR ARG ASN CYS LEU VAL GLY GLN GLY LEU VAL VAL LYS SEQRES 16 A 326 ILE GLY ASP PHE GLY MET SER ARG ASP ILE TYR SER THR SEQRES 17 A 326 ASP TYR TYR ARG VAL GLY GLY ARG THR MET LEU PRO ILE SEQRES 18 A 326 ARG TRP MET PRO PRO GLU SER ILE LEU TYR ARG LYS PHE SEQRES 19 A 326 THR THR GLU SER ASP VAL TRP SER PHE GLY VAL VAL LEU SEQRES 20 A 326 TRP GLU ILE PHE THR TYR GLY LYS GLN PRO TRP TYR GLN SEQRES 21 A 326 LEU SER ASN THR GLU ALA ILE ASP CYS ILE THR GLN GLY SEQRES 22 A 326 ARG GLU LEU GLU ARG PRO ARG ALA CYS PRO PRO GLU VAL SEQRES 23 A 326 TYR ALA ILE MET ARG GLY CYS TRP GLN ARG GLU PRO GLN SEQRES 24 A 326 GLN ARG HIS SER ILE LYS ASP VAL HIS ALA ARG LEU GLN SEQRES 25 A 326 ALA LEU ALA GLN ALA PRO PRO VAL TYR LEU ASP VAL LEU SEQRES 26 A 326 GLY FORMUL 2 HOH *53(H2 O) HELIX 1 AA1 LYS A 506 ARG A 508 5 3 HELIX 2 AA2 SER A 550 LEU A 567 1 18 HELIX 3 AA3 LEU A 597 HIS A 604 1 8 HELIX 4 AA4 GLY A 623 LEU A 644 1 22 HELIX 5 AA5 ALA A 652 ARG A 654 5 3 HELIX 6 AA6 MET A 671 TYR A 676 1 6 HELIX 7 AA7 SER A 677 TYR A 680 5 4 HELIX 8 AA8 PRO A 690 MET A 694 5 5 HELIX 9 AA9 PRO A 695 ARG A 702 1 8 HELIX 10 AB1 THR A 705 PHE A 721 1 17 HELIX 11 AB2 SER A 732 GLY A 743 1 12 HELIX 12 AB3 PRO A 753 TRP A 764 1 12 HELIX 13 AB4 GLU A 767 ARG A 771 5 5 HELIX 14 AB5 SER A 773 ALA A 787 1 15 SHEET 1 AA1 5 ILE A 510 GLU A 518 0 SHEET 2 AA1 5 GLY A 522 CYS A 529 -1 O LEU A 526 N LYS A 513 SHEET 3 AA1 5 LEU A 540 LEU A 546 -1 O ALA A 545 N LYS A 523 SHEET 4 AA1 5 LEU A 586 GLU A 590 -1 O PHE A 589 N ALA A 542 SHEET 5 AA1 5 PHE A 575 CYS A 579 -1 N PHE A 576 O VAL A 588 SHEET 1 AA2 3 ARG A 595 ASP A 596 0 SHEET 2 AA2 3 CYS A 656 GLY A 659 -1 O VAL A 658 N ARG A 595 SHEET 3 AA2 3 VAL A 663 ILE A 666 -1 O VAL A 663 N GLY A 659 SHEET 1 AA3 2 TYR A 681 ARG A 682 0 SHEET 2 AA3 2 MET A 688 LEU A 689 -1 O LEU A 689 N TYR A 681 CISPEP 1 ARG A 583 PRO A 584 0 -3.21 CRYST1 105.423 105.423 203.741 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009486 0.005477 0.000000 0.00000 SCALE2 0.000000 0.010953 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004908 0.00000